genome.fa.s334.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  26  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6764357--6764579	80	2.7	80	80	7	209	44	16	12	26	1.83
6777368--6777465	4	23.5	4	76	15	83	69	5	5	20	1.27
6778735--6778769	2	17.5	2	100	0	70	48	0	0	51	1.00
6779110--6779158	13	3.8	13	73	10	55	61	2	0	36	1.08
6779280--6779458	86	2.1	87	82	6	211	50	3	19	26	1.65
6781613--6781649	3	12.0	3	88	5	56	37	0	0	62	0.96
6785644--6785672	3	10.0	3	92	7	51	68	0	0	31	0.89
6786967--6786999	16	2.1	16	94	0	57	27	6	15	51	1.66
6787469--6787858	197	2.0	197	90	0	620	38	7	10	43	1.67
6789184--6789246	13	4.9	13	75	9	58	50	20	9	19	1.74
6789184--6789246	12	5.0	12	75	11	54	50	20	9	19	1.74
6789908--6789953	14	2.9	16	84	12	60	52	2	4	41	1.33
6794694--6794734	20	2.0	20	85	9	55	63	0	2	34	1.08
6796405--6796432	3	9.3	3	100	0	56	64	0	0	35	0.94
6798696--6798726	13	2.4	13	94	0	53	64	0	0	35	0.94
6799254--6799332	11	7.1	11	71	16	56	59	0	1	39	1.06
6807165--6807192	2	14.0	2	100	0	56	50	0	0	50	1.00
6807975--6808009	5	7.0	5	93	0	61	77	0	2	20	0.90
6818450--6818535	14	6.2	14	72	18	65	46	1	2	50	1.21
6819342--6819372	14	2.2	14	94	0	53	22	32	9	35	1.87
6820071--6820109	17	2.3	17	86	8	53	25	0	5	69	1.09
6830094--6830133	13	3.1	13	82	13	55	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6830094--6830135	12	3.3	12	87	9	57	61	0	0	38	0.96
6831655--6831710	14	3.9	13	78	19	58	33	0	1	64	1.04
6831662--6831729	31	2.2	31	80	15	79	36	0	2	60	1.12
6831678--6831734	16	3.7	15	83	4	51	38	0	3	57	1.16
6835985--6836165	91	2.0	91	86	2	256	41	15	8	34	1.78
6836921--6837771	422	2.0	426	96	3	1592	40	9	8	41	1.67
6839061--6839123	32	2.0	31	84	6	83	42	1	6	49	1.37
6839179--6839228	16	2.8	19	82	17	63	48	0	0	52	1.00
6839726--6839774	19	2.7	18	78	12	55	42	2	0	55	1.11
6839726--6839774	12	4.0	12	77	15	55	42	2	0	55	1.11
6844127--6844164	18	2.2	18	86	13	53	76	0	7	15	1.01
6844696--6844737	20	2.0	21	86	13	61	38	0	0	61	0.96
6851048--6851144	22	4.3	23	73	16	78	52	0	1	46	1.07
6851092--6851121	14	2.1	14	93	0	51	40	0	0	60	0.97
6851112--6851164	28	1.9	27	84	3	70	52	1	1	43	1.23
6851188--6851241	22	2.3	23	75	21	58	62	0	1	35	1.06
6851315--6851396	19	3.9	19	68	20	56	35	4	1	58	1.27
6851322--6851370	20	2.4	21	80	10	66	38	6	0	55	1.25
6851369--6851408	19	2.0	20	85	14	55	32	2	5	60	1.32
6851438--6851489	19	2.7	19	90	0	77	36	3	1	57	1.28
6853534--6853568	14	2.4	15	90	4	54	40	0	5	54	1.24
6855922--6856267	18	19.6	18	67	24	179	55	2	1	39	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6855952--6856275	71	5.0	68	71	21	222	56	3	1	38	1.26
6856027--6856145	47	2.4	49	73	18	77	56	3	0	39	1.22
6855961--6856130	89	1.9	89	83	7	220	55	2	1	40	1.22
6856157--6856278	23	4.8	25	66	21	65	59	0	2	37	1.17
6855928--6856268	15	22.6	15	69	22	184	55	2	1	39	1.24
6856342--6856393	16	3.3	17	79	15	67	48	3	0	48	1.20
6856363--6856427	25	2.5	26	81	15	82	49	1	1	47	1.20
6857363--6857392	15	1.9	16	93	6	53	66	0	0	33	0.92
6863122--6863152	2	15.5	2	100	0	62	51	0	0	48	1.00
6863152--6863187	2	18.5	2	94	5	65	50	0	50	0	1.00
6865780--6865815	2	18.0	2	88	0	54	47	2	0	50	1.15
6870820--6870858	20	2.0	20	85	10	53	20	0	12	66	1.24
6875358--6875461	51	2.1	50	87	1	145	47	2	3	46	1.35
6881894--6881946	24	2.2	24	80	6	63	49	1	1	47	1.23
6882580--6882606	2	13.5	2	100	0	54	51	0	0	48	1.00
6883150--6883186	12	3.0	12	88	7	56	21	0	2	75	0.92
6883223--6883258	15	2.4	15	90	9	56	83	0	5	11	0.80
6883809--6883889	20	4.1	20	78	0	90	32	8	9	49	1.66
6883902--6883966	20	3.7	20	64	30	56	30	6	10	52	1.61
6884275--6884387	18	6.2	18	74	18	92	33	5	11	49	1.61
6884371--6884426	13	4.5	12	75	16	51	30	8	16	44	1.78
6890264--6890323	12	5.0	11	73	25	50	81	5	11	1	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6891715--6892296	42	13.6	43	77	10	512	29	12	18	40	1.86
6891852--6892008	51	3.3	48	75	16	141	29	14	17	38	1.89
6893210--6893293	20	4.2	20	81	0	96	28	7	13	51	1.67
6893237--6893354	20	5.7	20	65	23	57	29	4	11	54	1.56
6893304--6893377	32	2.3	32	90	0	121	29	5	10	54	1.57
6893304--6893393	32	2.8	32	86	3	101	32	6	8	52	1.59
6893456--6893482	3	9.0	3	100	0	54	33	0	0	66	0.92
6893670--6893726	16	3.2	17	80	12	53	35	5	5	54	1.46
6893682--6893756	37	2.0	37	82	10	91	37	4	8	50	1.50
6893688--6893756	18	3.8	18	77	14	70	36	4	8	50	1.53
6898605--6898678	35	2.1	35	89	0	112	45	2	22	28	1.66
6929317--6929349	6	5.8	6	86	13	52	0	0	36	63	0.95
6929317--6929358	16	2.6	16	96	0	75	0	0	40	59	0.97
6946794--6946838	17	2.6	18	86	6	58	2	20	0	77	0.87
6947896--6947950	26	2.1	26	82	0	65	7	7	9	76	1.16
6948363--6948399	14	2.7	13	91	8	56	13	0	5	81	0.86
6948353--6948401	20	2.5	19	83	9	62	12	2	6	79	0.99
6948367--6948423	22	2.6	22	82	0	69	14	1	5	78	0.99
6948374--6948425	23	2.3	22	86	3	68	15	1	3	78	0.98
6948671--6948730	22	2.7	22	75	10	59	30	6	26	36	1.82
6949060--6949372	40	7.7	39	72	9	184	34	12	16	36	1.86
6949060--6949375	121	2.6	122	85	4	408	34	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6949060--6949393	81	4.1	79	75	6	267	34	12	17	35	1.87
6950184--6950216	12	2.7	13	86	13	52	0	18	0	81	0.68
6951290--6951352	26	2.4	27	82	12	78	7	19	0	73	1.08
6951340--6951409	21	3.3	22	77	16	76	7	12	2	77	1.09
6951391--6951439	13	3.5	13	79	17	53	6	16	0	77	0.96
6951351--6951443	30	3.0	31	81	6	98	6	16	2	75	1.11
6952593--6952623	11	2.9	11	95	4	55	0	6	0	93	0.35
6952566--6952618	15	3.6	15	84	2	72	0	18	0	81	0.70
6959169--6959208	16	2.5	15	84	11	53	2	7	2	87	0.71
6959168--6959209	10	4.1	10	77	17	50	2	11	2	83	0.84
6960148--6960204	27	2.1	27	87	3	80	7	8	8	75	1.19
6962440--6962496	18	3.1	19	77	12	55	45	1	0	52	1.11
6964144--6964663	58	8.8	57	78	11	476	34	12	8	44	1.72
6964234--6964272	16	2.4	16	86	4	51	41	0	7	51	1.31
6964144--6964653	118	4.3	117	79	8	464	35	12	8	44	1.72
6964678--6964758	5	15.8	5	72	21	53	79	2	6	12	1.02
6964673--6964742	13	5.5	13	75	13	56	78	2	7	11	1.05
6964678--6964758	6	13.5	6	71	13	60	79	2	6	12	1.02
6964683--6964742	25	2.4	25	86	5	77	80	3	6	10	1.01
6964678--6964758	11	6.8	11	73	18	56	79	2	6	12	1.02
6965644--6965668	13	1.9	13	100	0	50	88	0	0	12	0.53
6965824--6965951	6	21.7	6	79	12	88	75	0	2	21	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6965825--6965960	13	10.4	12	68	21	60	77	0	2	19	0.95
6965855--6965933	23	3.2	25	79	16	85	73	0	2	24	0.96
6965825--6965958	22	6.2	20	75	15	83	76	0	2	19	0.95
6965826--6965957	27	4.7	26	73	22	99	76	0	3	19	0.96
6966147--6966359	42	5.1	41	84	4	230	36	22	16	23	1.94
6966147--6966359	83	2.5	83	83	1	246	36	22	16	23	1.94
6969672--6969772	49	2.1	49	92	0	166	31	17	18	31	1.95
6970299--6970332	10	3.3	10	88	8	50	11	17	2	67	1.34
6970638--6970693	26	2.2	26	83	6	69	46	8	14	30	1.75
6971637--6971727	27	3.2	27	65	22	69	38	17	5	38	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160