genome.fa.s334.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  76  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15150598--15150650	26	2.0	26	92	0	88	24	18	26	30	1.98
15148796--15153151	885	5.0	878	76	10	3898	25	23	24	25	2.00
15157335--15157387	26	2.0	26	96	0	97	26	18	26	28	1.98
15159085--15159137	26	2.0	26	96	0	97	26	18	26	28	1.98
15159962--15160014	26	2.0	26	92	0	88	26	16	26	30	1.97
15160842--15160893	26	2.0	26	92	3	88	26	19	25	28	1.98
15161729--15161781	26	2.0	26	92	7	90	26	16	26	30	1.97
15158224--15167070	882	10.1	887	85	4	11343	25	24	24	26	2.00
15164313--15164365	26	2.0	26	96	0	97	28	20	24	26	1.99
15166944--15166996	26	2.0	26	96	0	97	26	20	28	24	1.99
15168549--15168601	26	2.0	26	96	0	97	26	18	26	28	1.98
15166970--15169505	877	2.9	873	86	4	3508	25	23	23	26	2.00
15169426--15169478	26	2.0	26	100	0	106	26	20	26	26	1.99
15170849--15170882	15	2.3	15	89	0	50	32	14	17	35	1.91
15172067--15172119	16	3.2	16	75	15	54	18	3	26	50	1.64
15173249--15173293	17	2.6	17	89	3	63	4	2	11	82	0.91
15173458--15173537	12	6.7	12	72	5	72	15	5	47	32	1.66
15173458--15173543	24	3.5	24	90	1	127	15	5	46	32	1.69
15173583--15173632	8	5.9	8	84	11	64	0	0	16	84	0.63
15173584--15173629	12	3.7	12	83	11	65	0	0	15	84	0.62
15173803--15174192	49	7.9	49	82	7	439	36	25	10	27	1.89
15185462--15185524	16	3.9	16	77	8	65	19	4	31	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15185467--15185535	33	2.1	33	86	5	95	15	2	31	49	1.60
15186030--15186113	38	2.2	38	82	0	105	11	25	39	23	1.89
15186680--15186732	22	2.4	21	84	12	63	3	3	9	83	0.90
15186897--15186975	12	6.7	12	67	8	54	16	5	45	32	1.69
15186897--15186981	24	3.5	24	85	4	118	16	5	44	32	1.72
15187022--15187057	12	3.0	12	88	12	56	0	0	16	83	0.65
15187026--15187056	15	2.1	15	100	0	62	0	0	12	87	0.55
15187995--15188047	26	2.0	26	85	0	70	30	16	24	28	1.97
15188884--15188933	26	1.9	26	95	0	91	28	18	26	28	1.98
15187126--15191191	889	4.6	886	86	3	5462	25	23	24	26	2.00
15189318--15189374	26	2.3	25	84	6	71	28	7	15	49	1.71
15189773--15189825	26	2.0	26	96	0	97	26	18	26	28	1.98
15190624--15190676	26	2.0	26	92	0	88	28	18	24	28	1.98
15192917--15192969	26	2.0	26	100	0	106	26	20	26	26	1.99
15194698--15194752	26	2.1	27	96	3	103	30	20	27	21	1.98
15195584--15195634	26	2.0	26	92	0	84	29	19	21	29	1.98
15192008--15197089	889	5.7	888	88	1	7247	25	23	24	26	2.00
15196471--15196523	26	2.0	26	100	0	106	26	20	26	26	1.99
15198192--15198244	26	2.0	26	100	0	106	26	20	26	26	1.99
15199076--15199128	26	2.0	26	92	0	88	28	18	24	28	1.98
15197124--15212104	884	16.7	886	76	10	11672	25	24	24	25	2.00
15201693--15201745	26	2.0	26	96	0	97	28	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15203731--15204578	460	1.8	458	87	1	1180	27	24	22	25	2.00
15204608--15204659	25	2.0	26	92	3	88	26	21	25	26	1.99
15208109--15208161	26	2.0	26	89	7	81	28	15	24	32	1.95
15208963--15209015	26	2.0	26	96	0	97	28	20	24	26	1.99
15211597--15211675	26	3.0	26	92	0	140	27	21	25	25	1.99
15211743--15212475	371	2.0	372	89	1	1132	22	22	25	29	1.99
15214072--15214114	22	2.0	22	100	0	86	18	23	13	44	1.86
15214638--15214690	26	2.0	26	92	0	88	26	16	26	30	1.97
15212122--15218997	876	7.8	862	83	6	8012	25	24	24	25	2.00
15216391--15216441	26	2.0	26	96	0	93	29	17	27	25	1.98
15217263--15217315	26	2.0	26	96	0	97	26	18	28	26	1.98
15218153--15218205	26	2.0	26	88	0	79	26	18	30	24	1.98
15215527--15218997	886	3.9	887	85	4	4622	25	24	24	25	2.00
15220351--15220411	26	2.4	26	94	5	108	26	22	24	26	2.00
15219007--15223684	888	5.3	887	86	3	6307	25	23	23	27	2.00
15222126--15222178	26	2.0	26	88	0	79	28	16	24	30	1.97
15224441--15224493	26	2.0	26	92	0	88	26	16	26	30	1.97
15225234--15225487	130	2.0	130	88	4	379	24	28	25	21	1.99
15226353--15226405	26	2.0	26	96	0	97	26	18	26	28	1.98
15229009--15229062	26	2.0	27	96	3	101	27	20	25	25	1.99
15225364--15242447	890	19.4	890	85	3	21929	25	23	24	26	2.00
15225364--15245831	890	23.2	887	81	7	21773	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15232546--15232598	26	2.0	26	100	0	106	26	20	26	26	1.99
15234327--15234380	26	2.1	26	93	6	92	27	18	25	27	1.98
15235213--15235262	26	1.9	26	95	0	91	28	18	26	28	1.98
15236938--15236990	26	2.0	26	96	0	97	28	20	24	26	1.99
15237827--15237879	26	2.0	26	92	0	88	28	18	24	28	1.98
15242212--15242264	26	2.0	26	85	0	70	30	16	22	30	1.96
15242238--15242587	159	2.2	159	86	3	463	22	28	28	20	1.99
15242536--15243999	703	2.1	706	88	2	2170	26	22	23	27	2.00
15244865--15244917	26	2.0	26	92	0	88	26	20	22	30	1.98
15246326--15246542	105	2.1	105	83	7	271	23	35	23	17	1.95
15247195--15247247	26	2.0	26	96	0	97	26	18	26	28	1.98
15248081--15248130	26	1.9	26	91	0	82	28	16	28	28	1.97
15249840--15249892	26	2.0	26	96	0	97	26	18	26	28	1.98
15246554--15252565	889	6.8	886	88	3	8441	25	23	24	26	2.00
15250729--15250781	26	2.0	26	96	0	97	28	16	26	28	1.97
15251610--15251662	26	2.0	26	89	7	81	28	18	22	30	1.98
15252489--15252541	26	2.0	26	96	0	97	26	20	24	28	1.99
15253217--15253269	26	2.0	26	96	0	97	28	20	24	26	1.99
15251795--15253334	720	2.1	719	88	3	2240	26	22	24	26	2.00
15252515--15255405	879	3.3	877	85	3	3853	25	23	24	26	2.00
15254985--15255036	26	2.0	26	88	0	77	28	19	23	28	1.98
15252515--15255405	887	3.3	880	85	3	3907	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15255169--15255640	235	2.0	235	89	0	710	25	21	26	26	1.99
15256110--15256160	26	2.0	26	88	0	75	29	15	25	29	1.96
15256995--15257047	26	2.0	26	92	0	88	26	16	26	30	1.97
15255404--15257912	891	2.8	885	88	2	3632	26	24	23	25	2.00
15258106--15258158	26	2.0	26	96	0	97	28	20	24	26	1.99
15262301--15262353	26	2.0	26	92	0	88	28	22	26	22	1.99
15264032--15264084	26	2.0	26	92	0	88	26	20	26	26	1.99
15263178--15278890	877	18.0	880	84	5	19134	25	24	24	25	2.00
15263178--15289074	884	29.1	881	76	9	19805	25	24	24	25	2.00
15265792--15265849	26	2.2	27	93	3	100	27	18	25	27	1.98
15268381--15268433	26	2.0	26	96	0	97	26	18	26	28	1.98
15269252--15269304	26	2.0	26	85	0	70	28	18	22	30	1.98
15270098--15270150	26	2.0	26	96	0	97	26	18	26	28	1.98
15270972--15271022	26	2.0	26	92	0	84	31	17	25	25	1.97
15271845--15271897	26	2.0	26	88	0	79	28	18	22	30	1.98
15272735--15272784	26	1.9	26	87	0	73	26	18	30	26	1.98
15273608--15273657	26	1.9	26	91	0	82	28	20	26	26	1.99
15274458--15274507	26	1.9	26	95	0	91	28	18	26	28	1.98
15273901--15278890	887	5.7	878	85	4	6378	25	24	24	25	2.00
15276219--15276271	26	2.0	26	88	0	79	28	18	22	30	1.98
15277107--15277159	26	2.0	26	88	0	79	24	20	24	30	1.99
15277337--15277361	12	2.1	12	100	0	50	8	28	64	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15277974--15278026	26	2.0	26	92	0	88	28	18	24	28	1.98
15279131--15279183	26	2.0	26	96	0	97	28	20	24	26	1.99
15280850--15281242	163	2.4	159	82	3	439	23	27	27	20	1.99
15283647--15283699	26	2.0	26	92	0	88	28	18	24	28	1.98
15284529--15284581	26	2.0	26	96	0	97	26	18	26	28	1.98
15285417--15285469	26	2.0	26	88	0	79	24	18	28	28	1.98
15286289--15286349	26	2.4	25	83	5	70	29	18	26	26	1.98
15287182--15287233	26	2.0	26	96	3	97	26	21	25	26	1.99
15288066--15288118	26	2.0	26	100	0	106	26	20	26	26	1.99
15288950--15288998	25	2.0	25	95	0	89	30	18	26	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160