genome.fa.s334.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  138  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25850200--25850763	179	3.2	177	87	4	784	42	6	13	37	1.70
25854301--25854325	10	2.5	10	100	0	50	92	0	8	0	0.40
25854647--25854724	30	2.5	31	75	8	88	75	0	16	7	1.02
25854658--25854716	10	5.7	11	72	11	54	81	0	13	5	0.85
25855930--25856431	41	12.1	41	87	4	704	22	17	22	36	1.95
25855930--25856431	124	4.0	123	89	3	704	22	17	22	36	1.95
25855930--25856431	165	3.0	165	88	3	726	22	17	22	36	1.95
25856619--25856692	6	12.8	6	80	9	75	20	2	1	75	1.00
25856623--25856692	29	2.4	28	81	13	79	20	2	1	75	1.00
25856619--25856702	40	2.1	40	82	8	100	22	2	1	73	1.01
25856629--25856702	23	3.2	23	72	16	64	22	2	1	72	1.04
25856844--25856891	18	2.6	18	80	6	60	14	4	4	77	1.08
25856856--25856889	9	3.8	9	84	0	50	17	2	2	76	1.04
25856844--25856897	18	2.8	20	72	11	58	14	3	3	77	1.04
25857692--25857750	19	3.2	19	74	11	59	16	0	1	81	0.78
25857784--25857850	5	13.6	5	76	17	61	16	4	0	79	0.90
25857776--25857817	18	2.3	19	87	4	59	14	7	0	78	0.95
25857762--25857824	28	2.3	28	81	8	67	15	6	1	76	1.07
25857702--25857838	12	10.0	13	67	26	63	18	2	3	75	1.08
25857777--25857850	29	2.5	28	85	12	87	16	6	0	77	0.98
25857884--25858160	59	4.7	60	84	7	354	47	6	10	35	1.64
25861399--25861479	42	2.0	41	87	2	117	45	17	17	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25863387--25863427	18	2.5	17	85	14	59	60	0	36	2	1.10
25863389--25863443	21	2.5	22	80	16	62	61	3	32	1	1.24
25863387--25863429	3	14.3	3	83	9	52	60	0	37	2	1.10
25863771--25863815	21	2.1	22	83	4	56	11	2	13	73	1.19
25870477--25870579	52	2.0	52	83	7	129	46	3	15	33	1.64
25870504--25870630	52	2.4	53	79	10	120	42	4	18	34	1.71
25872586--25872650	31	2.1	30	82	2	76	43	7	1	47	1.41
25872833--25872926	31	3.1	30	76	8	93	53	3	5	38	1.40
25878495--25878520	12	2.2	12	100	0	52	26	23	23	26	2.00
25879500--25879525	13	2.0	13	100	0	52	30	7	0	61	1.24
25884124--25884162	11	3.5	11	96	0	69	71	0	0	28	0.86
25884123--25884183	21	3.2	18	71	28	54	70	0	0	29	0.88
25884767--25884814	21	2.2	22	78	14	55	58	0	2	39	1.10
25884938--25884965	2	14.0	2	100	0	56	50	0	0	50	1.00
25887079--25887105	6	4.5	6	100	0	54	33	0	51	14	1.43
25895778--25895851	37	2.0	37	97	0	139	37	20	10	31	1.87
25899658--25899692	17	2.0	18	88	5	54	68	8	2	20	1.29
25899892--25900005	60	1.9	59	81	12	135	42	7	0	48	1.38
25899919--25900006	30	2.9	30	72	12	81	44	7	0	47	1.32
25900193--25900315	61	2.0	61	91	0	201	41	6	13	38	1.71
25900621--25900689	30	2.3	31	78	19	74	40	1	1	56	1.17
25909931--25909993	21	3.2	21	62	25	55	25	7	20	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25909920--25909996	38	2.0	38	100	0	154	25	7	18	48	1.75
25912227--25912299	30	2.5	30	81	2	85	31	19	6	42	1.77
25912323--25912422	30	3.3	30	84	0	119	36	7	22	35	1.81
25914438--25914472	2	17.5	2	93	0	61	51	0	0	48	1.00
25918508--25918569	26	2.4	27	78	8	74	29	14	8	48	1.72
25919760--25919796	10	3.4	11	88	11	58	37	0	8	54	1.30
25920461--25920536	32	2.4	32	78	8	84	46	6	27	19	1.75
25920756--25920788	16	2.0	17	88	5	50	45	6	9	39	1.61
25930899--25930948	4	12.0	4	80	16	57	28	0	0	72	0.86
25930899--25930951	26	2.0	26	89	7	81	28	0	0	71	0.86
25930934--25930998	22	2.7	22	86	13	76	46	0	0	53	1.00
25932042--25932074	15	2.1	16	88	5	50	57	0	0	42	0.98
25941319--25941379	29	2.1	29	87	3	88	49	8	0	42	1.32
25942160--25942289	59	2.2	59	88	2	190	45	4	0	49	1.28
25942592--25942631	21	1.9	21	85	10	55	50	2	0	47	1.14
25942427--25942790	128	2.9	124	80	10	366	45	6	3	44	1.46
25942491--25942821	121	2.7	124	78	10	336	46	6	3	43	1.46
25942928--25942983	22	2.5	22	80	8	60	66	3	1	28	1.19
25952987--25953030	22	2.0	22	95	0	79	43	13	11	31	1.80
25956922--25956965	22	2.0	22	90	0	70	43	11	11	34	1.77
25961327--25961433	49	2.3	46	86	4	142	36	12	16	34	1.86
25965627--25965663	15	2.3	17	90	9	60	35	0	2	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25965641--25965696	21	2.8	20	70	17	53	28	1	1	67	1.10
25966887--25966930	21	2.1	21	83	8	54	54	6	0	38	1.27
25967663--25967703	2	22.0	2	85	14	61	46	0	0	53	1.00
25967663--25967703	11	3.7	12	84	15	61	46	0	0	53	1.00
25976876--25976908	14	2.4	14	100	0	66	0	30	27	42	1.56
25985795--25985838	22	2.0	22	95	0	79	31	11	13	43	1.80
25986061--25986127	26	2.7	26	81	4	75	20	23	14	40	1.90
25989431--25989474	22	2.0	22	86	0	61	36	9	9	45	1.68
25993328--25993355	14	2.0	14	100	0	56	28	7	14	50	1.69
25993671--25993699	14	2.1	14	93	6	51	58	0	0	41	0.98
25996739--25996782	23	1.9	23	90	0	70	47	2	13	36	1.56
25997306--25997373	26	2.6	26	92	0	109	41	16	14	27	1.87
25997585--25997651	21	3.1	21	71	12	55	32	0	2	64	1.09
26009905--26010238	49	6.8	49	86	3	422	29	10	20	40	1.85
26009905--26010237	146	2.3	147	88	2	481	29	10	20	40	1.85
26009905--26010238	97	3.4	97	82	7	426	29	10	20	40	1.85
26010211--26010410	44	4.5	45	80	6	185	33	14	11	40	1.82
26010243--26010406	89	1.8	89	81	5	206	34	15	9	40	1.80
26010556--26010593	9	4.1	9	86	6	58	13	2	0	84	0.73
26010739--26010787	23	2.1	23	92	0	80	48	8	12	30	1.69
26018179--26018208	14	2.1	14	93	0	51	30	0	0	70	0.88
26018284--26018328	22	2.1	22	87	4	65	46	4	0	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26018428--26018487	21	2.7	22	79	5	59	51	3	3	41	1.35
26018621--26018668	18	2.5	20	83	10	64	18	4	4	72	1.17
26018609--26018678	13	5.6	12	71	26	56	18	2	4	74	1.11
26019214--26019252	19	2.1	18	90	4	60	66	0	33	0	0.92
26023592--26023664	12	5.9	12	71	17	51	57	1	1	39	1.16
26031715--26031757	16	2.7	15	92	7	68	81	0	4	13	0.84
26031989--26032026	12	2.9	13	84	11	51	71	0	21	7	1.11
26032034--26032090	1	57.0	1	76	0	51	87	8	1	1	0.68
26032039--26032091	28	2.0	26	85	7	70	86	9	3	0	0.68
26032034--26032090	19	3.1	19	76	2	62	87	8	1	1	0.68
26033287--26033361	19	4.0	18	73	13	62	29	9	17	44	1.80
26034061--26034199	64	2.2	64	84	11	178	23	16	13	46	1.83
26035748--26035802	28	2.0	28	85	7	76	23	3	5	67	1.28
26039705--26039759	28	2.0	28	82	7	67	63	10	9	16	1.51
26040070--26040111	18	2.3	19	83	8	59	54	2	0	42	1.13
26040478--26040529	7	7.3	7	82	4	68	57	0	1	40	1.10
26040546--26040589	19	2.4	18	84	3	52	56	0	0	43	0.99
26042148--26042175	2	14.0	2	100	0	56	50	0	0	50	1.00
26044740--26044782	6	7.2	6	82	10	52	16	2	62	18	1.43
26050055--26051185	358	3.2	355	83	3	1432	36	12	13	37	1.82
26051194--26051243	23	2.2	23	81	0	55	40	18	4	38	1.69
26059474--26059530	21	2.7	20	74	17	53	47	0	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26059492--26059532	20	2.0	20	86	9	57	56	0	4	39	1.21
26062071--26062117	21	2.3	21	85	3	60	42	8	40	8	1.66
26071103--26071143	21	2.0	21	100	0	82	9	9	53	26	1.65
26071108--26071155	21	2.3	21	88	0	69	12	6	56	25	1.59
26071091--26071150	21	2.6	25	75	25	76	11	6	60	21	1.54
26071291--26071364	21	3.5	21	81	0	76	32	8	50	9	1.64
26073247--26073347	43	2.5	43	76	13	106	42	0	3	53	1.19
26073373--26073421	18	2.7	18	78	9	55	30	6	4	59	1.41
26080190--26080225	2	18.0	2	94	0	63	47	0	0	52	1.00
26081523--26081561	19	2.0	19	90	5	60	64	2	15	17	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160