genome.fa.s334.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  57  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12056578--12056602	13	1.9	13	100	0	50	72	0	20	8	1.10
12058054--12058114	6	9.5	6	80	16	52	14	0	9	75	1.04
12058067--12058153	5	17.4	5	71	15	56	14	1	6	77	1.04
12058065--12058153	21	4.4	20	66	20	60	14	1	6	77	1.03
12058059--12058115	14	4.3	14	89	8	75	14	0	8	77	0.99
12058059--12058108	14	3.7	14	89	7	77	14	0	8	78	0.97
12058246--12058302	13	4.5	13	72	24	59	26	7	12	54	1.63
12058288--12058369	23	3.4	23	71	15	76	25	7	12	54	1.62
12058227--12058412	86	2.2	85	77	11	193	22	7	12	56	1.61
12058545--12058599	13	4.4	13	70	25	55	25	5	12	56	1.58
12058585--12058709	23	5.4	23	71	17	107	26	7	11	55	1.61
12058545--12058620	37	2.1	37	85	5	100	25	6	13	55	1.62
12058576--12058708	43	2.9	46	87	7	175	27	6	11	54	1.61
12058695--12058727	13	2.6	13	85	4	50	21	6	15	57	1.59
12062287--12062337	10	4.9	10	81	15	59	45	1	3	49	1.32
12062294--12062340	9	4.8	9	80	19	58	46	2	2	48	1.25
12062280--12062336	21	2.7	22	86	8	73	43	1	3	50	1.29
12062450--12062495	19	2.6	17	86	10	65	47	4	0	47	1.21
12062450--12062495	18	2.6	17	83	10	56	47	4	0	47	1.21
12062546--12062632	10	8.7	10	77	9	97	54	5	0	40	1.25
12062546--12062632	21	4.3	20	78	15	81	54	5	0	40	1.25
12062546--12062646	10	10.4	9	71	20	71	52	4	0	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12062615--12062667	18	3.1	17	78	5	61	52	1	0	45	1.11
12062700--12062809	20	5.8	19	68	9	64	56	7	1	34	1.38
12063040--12063103	9	7.3	9	76	13	55	70	3	0	26	1.02
12063039--12063120	43	1.9	43	82	9	105	68	2	3	25	1.18
12063134--12063201	30	2.4	29	82	7	77	52	0	2	44	1.16
12063132--12063194	28	2.3	27	81	8	74	52	0	3	44	1.17
12063167--12063204	19	2.1	19	85	5	51	42	0	0	57	0.98
12063339--12063409	30	2.4	29	77	11	72	23	9	8	57	1.58
12063385--12063430	20	2.2	20	85	11	58	30	2	8	58	1.40
12063473--12063512	21	2.0	21	90	5	64	35	0	7	57	1.27
12063699--12063761	31	2.0	31	82	11	76	42	0	7	49	1.32
12067699--12067743	3	15.0	3	85	0	54	62	4	2	31	1.27
12073032--12073109	41	1.9	41	89	0	120	30	15	14	39	1.87
12073094--12073122	14	2.1	14	100	0	58	20	13	13	51	1.75
12073025--12073136	41	2.8	41	77	9	113	30	13	16	40	1.86
12073727--12073852	32	3.9	33	69	11	91	32	15	15	37	1.88
12073717--12073868	64	2.3	64	86	2	196	34	17	13	34	1.90
12074134--12074220	40	2.1	41	80	2	104	37	16	13	32	1.88
12074368--12074620	103	2.4	103	84	1	310	33	15	14	36	1.88
12074436--12074649	103	2.1	103	82	1	259	34	16	15	34	1.90
12074573--12074724	82	1.9	81	83	1	196	35	11	14	38	1.82
12074463--12074805	185	1.9	184	83	4	449	34	13	15	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12075024--12075077	23	2.3	24	80	3	65	79	5	12	1	0.98
12076911--12076944	11	3.0	11	86	4	50	85	0	14	0	0.60
12076908--12076953	19	2.4	19	79	20	51	82	0	15	2	0.76
12077359--12077398	17	2.3	18	86	4	55	17	0	7	75	1.03
12077493--12077531	21	1.9	21	89	5	62	20	35	28	15	1.93
12077552--12077590	20	2.0	20	84	0	51	7	5	5	82	0.96
12077585--12077629	16	2.9	16	81	18	60	28	0	4	66	1.11
12077643--12077784	4	33.8	4	70	17	67	24	2	4	69	1.18
12078339--12078378	20	2.0	20	95	0	71	27	17	15	40	1.89
12078719--12078750	8	3.9	8	95	4	55	25	0	0	75	0.81
12078825--12078866	22	1.9	22	85	9	59	14	11	2	71	1.24
12078870--12079518	58	10.9	58	84	6	770	43	7	13	35	1.71
12078877--12079518	118	5.4	116	83	8	758	43	7	13	35	1.72
12087933--12088018	43	2.0	43	97	0	163	39	19	13	26	1.90
12089973--12090059	7	11.9	7	84	11	95	83	0	5	10	0.79
12089970--12090052	38	2.2	37	89	4	114	84	0	6	9	0.78
12089973--12090059	46	1.9	45	88	6	131	83	0	5	10	0.79
12089971--12090052	1	82.0	1	70	0	56	85	0	4	9	0.73
12091080--12091374	41	7.1	42	85	6	352	22	15	22	39	1.92
12091387--12091440	9	5.7	10	85	8	69	85	11	0	3	0.73
12091626--12091676	9	5.7	9	93	6	70	25	0	7	66	1.18
12091626--12091687	18	3.3	19	82	17	76	29	0	8	62	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12091628--12091758	6	21.2	6	69	21	53	28	1	5	64	1.24
12091883--12091915	3	11.0	3	100	0	66	33	0	0	66	0.92
12092379--12092418	20	2.0	20	90	0	62	25	12	17	45	1.83
12092693--12092758	17	3.8	18	79	16	68	18	0	3	78	0.87
12092709--12092758	13	3.9	12	85	10	64	22	0	2	76	0.89
12092716--12092757	14	3.1	14	93	3	68	23	0	2	73	0.94
12092714--12092774	18	3.4	18	84	6	63	26	0	4	68	1.09
12092709--12092758	4	12.8	4	79	12	59	22	0	2	76	0.89
12092778--12092845	15	4.3	15	71	14	57	13	8	1	76	1.08
12092778--12092857	15	5.2	15	71	21	51	13	10	1	75	1.12
12092827--12092868	22	1.9	22	85	9	59	14	11	2	71	1.24
12092872--12093400	58	8.9	58	86	6	713	45	6	13	35	1.69
12092872--12093400	119	4.4	120	87	5	706	45	6	13	35	1.69
12092864--12093402	177	3.0	177	91	3	834	44	6	12	35	1.70
12102851--12102926	34	2.2	34	86	9	102	31	13	18	36	1.89
12103542--12103618	32	2.4	32	87	10	104	36	3	11	48	1.58
12108370--12108395	2	13.0	2	100	0	52	0	50	0	50	1.00
12108395--12108426	2	16.0	2	100	0	64	50	0	0	50	1.00
12113768--12113833	30	2.2	30	83	5	80	51	1	9	37	1.43
12118288--12118335	2	24.0	2	95	0	87	52	0	0	47	1.00
12119924--12119965	21	2.0	21	85	0	57	33	28	19	19	1.96
12121967--12122009	19	2.3	19	92	8	70	30	6	6	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12123705--12123832	67	1.9	67	85	0	175	23	23	14	38	1.92
12131647--12131700	20	2.8	19	75	10	56	50	0	0	50	1.00
12135980--12136027	15	3.3	15	82	5	64	85	4	6	4	0.83
12144204--12144249	19	2.4	19	85	0	56	26	19	13	41	1.88
12144220--12144256	19	1.9	19	88	0	56	24	18	16	40	1.90
12145897--12145939	19	2.3	19	91	0	68	25	16	16	41	1.88
12148953--12149005	21	2.6	21	80	11	56	58	1	1	37	1.20
12148964--12149007	21	2.0	22	86	4	63	50	2	2	45	1.27
12151523--12151575	15	3.5	15	75	10	54	71	1	3	22	1.12
12156822--12156854	16	2.0	17	88	5	50	45	9	0	45	1.35
12158897--12158926	12	2.4	13	94	5	53	23	0	0	76	0.78
12159749--12159796	24	2.0	25	91	4	80	47	10	2	39	1.49
12161125--12161149	3	8.3	3	100	0	50	68	0	0	32	0.90
12161284--12161328	20	2.2	21	92	4	74	53	13	2	31	1.52
12162904--12162928	13	1.9	13	100	0	50	52	0	0	48	1.00
12162963--12163010	19	2.5	19	82	0	69	8	25	39	27	1.84
12164209--12164459	45	5.4	45	86	7	333	36	24	11	27	1.91
12164184--12164459	94	3.0	91	84	7	358	36	23	12	27	1.91
12168761--12168799	14	2.7	14	81	18	53	66	0	20	12	1.24
12176149--12176190	13	3.2	13	80	12	50	69	0	30	0	0.89
12179767--12180068	154	2.0	154	91	0	496	37	17	13	32	1.88
12192484--12192508	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12198996--12199035	17	2.3	18	83	16	57	57	7	0	35	1.27
12199162--12199232	37	1.9	37	94	0	124	30	15	14	39	1.87
12200826--12201093	116	2.4	112	82	8	296	44	3	7	44	1.48
12205946--12205978	17	1.9	17	88	11	50	24	18	9	48	1.76
12215715--12215836	61	2.0	61	90	0	190	32	18	8	40	1.81
12215888--12215915	14	2.0	14	100	0	56	28	0	7	64	1.20
12217305--12217426	62	2.0	62	88	0	181	35	26	14	23	1.94
12217586--12217640	23	2.4	23	96	0	101	27	7	32	32	1.84
12218810--12218840	16	1.9	16	100	0	62	29	0	6	64	1.18
12221089--12221208	59	2.0	59	96	0	222	50	6	11	31	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160