genome.fa.s334.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  15  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4451350--4451413	28	2.4	27	80	10	78	43	3	12	40	1.58
4456995--4457038	22	2.0	22	95	0	79	31	11	13	43	1.80
4457181--4457230	26	2.0	25	84	7	66	20	18	6	56	1.62
4457295--4457354	25	2.4	25	100	0	120	15	30	20	35	1.93
4461054--4461097	22	2.0	22	91	8	72	31	9	13	45	1.75
4461240--4461289	26	2.0	25	84	7	66	22	16	6	56	1.62
4468216--4468267	19	2.7	19	85	5	61	53	0	0	46	1.00
4468220--4468249	12	2.5	12	94	0	51	60	0	0	40	0.97
4468227--4468276	12	4.2	12	80	10	57	50	0	2	48	1.12
4468345--4468440	29	3.5	29	75	20	91	47	0	1	51	1.07
4468383--4468444	29	2.1	29	90	0	97	50	0	1	48	1.10
4468407--4468445	21	1.9	20	89	5	60	56	0	0	43	0.99
4468399--4468462	29	2.2	29	83	5	76	62	0	0	37	0.95
4468438--4468479	21	2.0	22	85	4	59	73	0	4	21	1.01
4469641--4469802	79	2.0	81	92	4	274	25	16	29	29	1.96
4472161--4472219	28	2.1	28	87	0	82	47	8	18	25	1.77
4473706--4473980	131	2.1	131	91	2	444	20	20	16	43	1.88
4482506--4482602	32	3.2	31	63	31	73	43	3	22	30	1.69
4482487--4482608	60	2.0	60	98	0	235	41	2	21	34	1.66
4486498--4486541	14	2.9	15	86	10	54	40	4	0	54	1.21
4488443--4488481	17	2.3	17	86	8	53	25	0	2	71	0.98
4488426--4488504	27	2.8	27	75	12	79	31	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4490093--4490125	12	2.8	12	86	13	50	30	0	0	69	0.88
4491642--4491716	9	8.0	9	76	19	57	6	5	2	85	0.82
4491681--4491710	1	30.0	1	100	0	60	0	0	0	100	0.00
4510388--4510478	46	2.0	46	95	2	166	42	9	21	25	1.84
4517163--4517187	5	5.0	5	100	0	50	0	20	0	80	0.72
4524063--4524100	18	2.1	18	85	9	51	7	13	34	44	1.72
4526211--4526253	19	2.3	19	88	11	63	69	0	16	13	1.19
4526337--4526372	2	18.5	2	94	5	65	47	0	52	0	1.00
4534083--4534119	17	2.1	18	85	14	51	29	0	2	67	1.04
4534131--4534164	16	2.2	15	89	5	50	47	8	0	44	1.34
4551840--4551886	6	8.2	6	83	6	62	4	12	0	82	0.80
4551842--4551880	17	2.3	16	86	8	51	5	12	0	82	0.83
4551845--4551891	24	2.0	24	95	4	87	8	12	0	78	0.95
4552450--4552537	45	2.0	44	82	6	106	34	7	6	51	1.58
4554313--4554355	19	2.1	21	83	8	54	53	2	4	39	1.34
4554552--4554593	14	3.1	14	86	6	61	52	0	0	47	1.00
4554563--4554699	15	8.5	15	67	19	55	49	0	1	48	1.15
4554563--4554699	26	4.9	29	72	18	96	49	0	1	48	1.15
4554611--4554670	23	2.5	24	84	10	70	56	0	1	41	1.09
4561340--4561422	23	3.7	22	75	12	62	49	1	0	49	1.08
4561540--4561585	23	2.0	24	86	4	67	52	0	6	41	1.27
4562231--4562272	20	2.1	20	86	0	57	23	9	14	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4562823--4562880	25	2.3	25	78	3	71	62	12	5	20	1.49
4563060--4563084	11	2.3	11	100	0	50	16	0	16	68	1.22
4563152--4563189	18	2.1	19	85	5	51	28	2	0	68	1.03
4563335--4563394	25	2.4	25	80	8	77	61	10	3	25	1.43
4564494--4564528	2	17.5	2	87	0	52	2	0	45	51	1.16
4570954--4570979	2	13.0	2	100	0	52	50	0	0	50	1.00
4571637--4571680	20	2.2	20	88	4	63	52	0	2	45	1.13
4572144--4572183	21	2.0	21	90	5	64	30	5	0	65	1.14
4573190--4573242	27	1.9	26	85	11	70	39	0	0	60	0.97
4573200--4573240	13	2.9	15	75	17	52	41	0	0	58	0.98
4576009--4576046	2	19.5	2	94	5	69	52	0	47	0	1.00
4578596--4578632	11	3.5	11	92	3	58	29	0	0	70	0.88
4590186--4590234	21	2.3	21	85	0	62	55	0	28	16	1.42
4610467--4610516	10	4.6	11	78	11	59	54	2	0	44	1.11
4616836--4616865	15	2.1	15	93	6	53	50	0	0	50	1.00
4616985--4617026	20	2.2	19	86	4	57	28	2	0	69	1.01
4617102--4617157	23	2.4	23	84	0	85	53	1	3	41	1.29
4617123--4617251	30	4.3	29	75	9	100	54	1	8	35	1.41
4617123--4617226	30	3.5	29	80	6	111	52	0	8	37	1.39
4625121--4625170	22	2.5	19	83	9	55	58	0	0	42	0.98
4628636--4628676	11	3.7	11	80	0	55	82	0	17	0	0.66
4628646--4628699	18	3.1	17	81	13	56	74	1	24	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4631985--4632064	30	2.6	30	82	5	90	46	5	15	33	1.67
4634312--4634344	4	8.2	4	100	0	66	48	0	0	51	1.00
4634341--4634371	3	10.3	3	100	0	62	64	0	0	35	0.94
4636506--4636552	2	23.5	2	95	0	85	48	0	2	48	1.13
4642916--4642967	22	2.5	22	93	6	90	50	0	0	50	1.00
4649348--4649374	2	13.5	2	100	0	54	48	0	51	0	1.00
4651683--4651712	10	2.8	11	95	5	53	30	0	0	70	0.88
4651683--4651715	11	3.1	11	86	8	50	30	0	0	69	0.88
4653172--4653221	21	2.3	22	79	3	57	32	12	2	54	1.49
4653842--4653882	15	2.9	15	82	17	61	46	0	0	53	1.00
4653833--4653897	13	5.2	12	75	14	60	46	0	0	53	1.00
4658254--4658292	20	1.9	21	84	5	53	7	23	0	69	1.14
4661934--4661961	2	14.0	2	100	0	56	50	0	0	50	1.00
4667539--4667583	20	2.2	20	96	0	81	35	24	4	35	1.76
4669995--4670103	19	5.5	19	68	16	62	50	0	1	46	1.18
4670466--4670505	21	1.9	21	85	10	55	45	5	0	50	1.23
4674489--4674571	38	2.2	38	95	0	148	33	4	24	37	1.77
4675600--4675654	3	18.7	3	88	3	85	30	0	3	65	1.10
4679869--4679918	23	2.1	25	81	7	59	60	0	0	40	0.97
4681769--4681810	13	3.2	13	90	6	59	71	0	2	26	0.98
4687325--4687357	12	2.8	12	86	4	50	63	0	3	33	1.10
4687975--4688009	3	11.7	3	100	0	70	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4691527--4691557	16	1.9	16	93	0	53	22	16	22	38	1.92
4692958--4693026	28	2.5	26	77	13	75	52	1	4	42	1.30
4696547--4696715	84	2.0	84	95	0	302	23	22	24	30	1.99
4698864--4698905	11	3.8	11	87	0	66	50	26	2	21	1.61
4701183--4701259	29	2.6	30	82	12	95	42	0	1	55	1.07
4701183--4701264	30	2.8	29	82	12	96	41	0	1	57	1.06
4705537--4705578	11	3.8	11	78	12	50	23	0	4	71	1.05
4706953--4707015	31	2.1	30	82	14	76	41	1	1	55	1.19
4706978--4707024	20	2.3	20	85	0	67	51	0	0	48	1.00
4706987--4707035	21	2.5	19	80	9	53	51	0	2	46	1.12
4709086--4709167	40	2.0	41	92	2	139	18	10	30	40	1.85
4710202--4710278	39	2.0	39	89	2	120	40	2	11	45	1.54
4711241--4711774	208	2.6	208	85	3	688	41	12	11	34	1.79
4711885--4711940	22	2.5	22	94	2	94	32	10	8	48	1.69
4717991--4718021	16	1.9	16	93	0	53	45	0	3	51	1.17
4718360--4718396	19	1.9	19	88	0	56	54	13	8	24	1.66
4719409--4719451	22	1.9	23	95	4	79	34	4	4	55	1.41
4721461--4721513	20	2.6	20	84	3	70	50	1	0	47	1.12
4721448--4721515	9	7.0	9	71	15	55	45	1	0	52	1.09
4723067--4723098	2	16.0	2	100	0	64	50	0	50	0	1.00
4725075--4725148	37	2.0	37	89	5	114	50	20	8	21	1.74
4727101--4727140	21	2.0	19	85	9	53	60	2	17	20	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4731389--4731428	21	1.9	21	84	0	53	25	0	7	67	1.16
4734705--4734764	30	2.0	30	90	0	93	30	3	25	41	1.71
4735950--4735980	3	10.3	3	92	0	53	29	0	3	67	1.06
4742550--4742607	30	1.9	30	85	0	80	51	1	0	46	1.11
4751325--4751368	22	2.0	22	82	8	54	54	2	2	40	1.25
4762074--4762102	10	3.0	10	95	5	51	62	0	0	37	0.96
4762577--4762808	124	1.9	124	91	2	387	27	27	14	31	1.95
4762534--4762831	124	2.4	123	84	2	386	24	26	15	32	1.95
4763057--4763120	27	2.4	27	81	2	76	59	0	6	34	1.23
4763406--4763449	19	2.3	19	82	17	56	43	4	4	47	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160