genome.fa.s334.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  78  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15417712--15420641	889	3.3	887	84	5	3813	24	24	25	25	2.00
15420328--15420377	26	1.9	26	100	0	100	28	20	26	26	1.99
15420942--15420994	26	2.0	26	96	0	97	28	20	24	26	1.99
15420023--15421262	622	2.0	615	86	4	1719	24	26	27	21	1.99
15422289--15422341	26	2.0	26	96	0	97	26	20	24	28	1.99
15422315--15422843	159	3.3	157	86	2	673	23	29	28	18	1.98
15423493--15423545	26	2.0	26	92	0	88	26	20	24	28	1.99
15424384--15424433	26	1.9	26	95	0	91	28	18	28	26	1.98
15422633--15425298	888	3.0	885	87	2	3767	25	24	24	25	2.00
15425971--15426023	26	2.0	26	88	0	79	28	20	24	26	1.99
15427723--15427775	26	2.0	26	92	7	90	30	20	24	24	1.99
15425243--15437655	885	13.9	883	74	11	8218	25	24	24	25	2.00
15428793--15428844	26	2.0	26	96	0	95	26	17	26	28	1.97
15428579--15429007	185	2.3	185	85	0	570	21	28	27	21	1.99
15429681--15429732	26	2.0	26	100	0	104	26	19	26	26	1.99
15431414--15431467	26	2.1	26	86	6	74	33	20	16	29	1.95
15432298--15432350	26	2.0	26	96	0	97	26	22	26	24	2.00
15428764--15437867	890	10.4	888	85	4	11635	25	24	24	25	2.00
15434066--15434118	26	2.0	26	92	0	88	26	16	28	28	1.97
15434947--15434999	26	2.0	26	92	0	88	28	18	24	28	1.98
15435837--15435889	26	2.0	26	96	0	97	26	22	26	24	2.00
15437585--15437634	26	1.9	26	91	0	82	28	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15440084--15445271	860	6.0	860	88	4	7019	25	23	24	26	2.00
15444365--15444415	26	2.0	26	100	0	102	27	19	27	25	1.99
15446251--15446313	16	3.9	16	77	8	65	19	4	31	44	1.71
15446256--15446324	33	2.1	33	86	5	95	15	2	31	49	1.60
15446804--15446901	38	2.6	38	81	1	117	10	25	40	23	1.86
15447473--15447517	17	2.6	17	83	13	56	0	4	13	82	0.82
15447752--15447805	14	3.6	15	85	14	76	0	0	14	85	0.61
15447752--15447809	15	3.9	14	82	10	71	0	0	15	84	0.62
15447980--15448512	49	10.9	49	86	6	726	35	26	11	25	1.91
15460591--15460621	16	1.9	16	93	0	53	22	9	25	41	1.84
15462695--15462740	18	2.6	18	83	10	58	2	4	4	89	0.66
15462697--15462740	16	2.6	16	85	7	52	2	4	4	88	0.68
15462960--15463006	17	2.8	16	90	9	76	0	0	14	85	0.61
15462958--15463009	13	3.9	13	85	9	70	0	0	15	84	0.62
15462958--15463010	14	3.6	14	83	16	72	0	0	15	84	0.61
15463185--15463718	49	10.9	49	86	6	708	36	26	11	26	1.89
15475819--15475877	17	3.6	16	75	11	57	16	3	32	47	1.64
15477084--15477163	12	6.7	12	67	5	54	15	7	46	31	1.73
15477084--15477169	24	3.5	24	83	1	109	15	8	45	31	1.75
15477208--15477258	4	13.0	4	79	10	52	1	1	17	78	0.94
15477213--15477257	14	3.0	15	84	12	65	2	0	17	80	0.82
15477214--15477258	18	2.7	16	86	10	63	2	0	15	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15478204--15478253	26	1.9	26	91	0	82	26	22	30	22	1.99
15479946--15480024	26	3.0	26	94	0	140	27	18	25	27	1.98
15480863--15480912	26	1.9	26	100	0	100	28	20	26	26	1.99
15481753--15481805	26	2.0	26	96	0	97	26	18	26	28	1.98
15477329--15483891	891	7.4	890	86	4	8885	24	24	25	25	2.00
15483574--15484207	316	2.0	317	87	2	916	21	25	31	22	1.98
15484714--15484766	26	2.0	26	96	0	97	26	18	26	28	1.98
15486403--15486455	26	2.0	26	96	0	97	26	18	26	28	1.98
15487290--15487342	26	2.0	26	96	0	97	26	18	26	28	1.98
15485643--15488164	891	2.8	883	87	3	3726	25	24	24	25	2.00
15488992--15489044	26	2.0	26	96	0	97	26	18	26	28	1.98
15491562--15491614	26	2.0	26	92	0	88	26	16	26	30	1.97
15492457--15492507	26	2.0	26	96	0	93	29	17	27	25	1.98
15489932--15495172	889	5.9	889	85	3	6734	25	23	24	26	2.00
15495132--15495205	26	2.8	26	91	0	121	29	16	24	29	1.96
15496797--15496849	26	2.0	26	96	0	97	26	22	24	26	2.00
15495274--15499090	886	4.3	885	86	3	4956	25	23	24	26	2.00
15497683--15497735	26	2.0	26	96	0	97	26	18	26	28	1.98
15499360--15499412	26	2.0	26	88	0	79	30	18	22	28	1.98
15500245--15500297	26	2.0	26	88	0	79	28	16	24	30	1.97
15499091--15503865	868	5.4	880	83	7	5799	25	24	24	26	2.00
15503783--15503832	26	1.9	26	91	0	82	26	18	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15504506--15504558	26	2.0	26	96	0	97	28	20	24	26	1.99
15506287--15506339	26	2.0	26	96	0	97	28	20	24	26	1.99
15503809--15507213	888	3.8	880	87	3	4825	25	23	24	26	2.00
15507168--15507243	26	2.9	26	86	7	109	27	17	28	26	1.97
15507917--15507969	26	2.0	26	96	0	97	28	20	26	24	1.99
15507220--15526791	888	22.1	887	81	5	20926	25	23	24	26	2.00
15509694--15509743	26	1.9	26	87	0	73	32	18	22	28	1.97
15510573--15510625	26	2.0	26	96	0	97	28	20	24	26	1.99
15514951--15515003	26	2.0	26	92	0	88	26	16	26	30	1.97
15515839--15515891	26	2.0	26	88	0	79	30	18	22	28	1.98
15516729--15516782	26	2.1	26	85	0	72	29	18	24	27	1.98
15517616--15517668	26	2.0	26	92	0	88	26	16	26	30	1.97
15518506--15518558	26	2.0	26	92	0	88	28	16	26	28	1.97
15519393--15519445	26	2.0	26	100	0	106	26	16	26	30	1.97
15520088--15520117	12	2.5	12	100	0	60	36	20	30	13	1.90
15520849--15520903	23	2.6	21	81	13	67	3	1	10	83	0.84
15520849--15520902	17	3.2	17	84	7	67	3	1	11	83	0.85
15521066--15521151	24	3.5	24	85	1	109	16	6	44	32	1.74
15521185--15521229	15	3.1	15	84	12	51	0	4	15	80	0.87
15522137--15522196	26	2.4	26	91	5	97	28	20	25	26	1.99
15522377--15522401	4	6.2	4	100	0	50	0	24	76	0	0.80
15523041--15523093	26	2.0	26	89	7	81	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15523737--15523767	12	2.6	12	100	0	62	38	19	29	12	1.89
15524219--15526600	891	2.7	892	95	0	4180	25	25	23	25	2.00
15526549--15526990	159	2.8	159	82	2	458	21	27	30	20	1.98
15527587--15527639	26	2.0	26	100	0	106	26	20	26	26	1.99
15528474--15528523	26	1.9	26	95	0	91	28	20	28	24	1.99
15526733--15529568	886	3.2	884	87	2	3905	25	24	24	25	2.00
15529357--15529409	26	2.0	26	92	0	88	28	18	24	28	1.98
15529542--15529594	26	2.0	26	92	0	88	26	16	28	28	1.97
15529335--15529753	185	2.3	184	83	1	507	23	27	28	21	1.99
15531288--15531338	26	2.0	26	96	0	93	29	17	27	25	1.98
15529540--15532416	898	3.3	883	83	7	3666	25	24	24	25	2.00
15536467--15536519	26	2.0	26	96	0	97	26	18	26	28	1.98
15534886--15537423	876	2.9	873	87	3	3504	25	23	23	26	2.00
15537344--15537396	26	2.0	26	100	0	106	26	20	26	26	1.99
15538766--15538799	15	2.3	15	89	0	50	32	14	17	35	1.91
15539073--15539135	16	3.9	16	81	8	74	20	4	28	46	1.71
15540258--15540312	19	2.9	19	79	12	60	7	1	9	81	0.93
15540268--15540313	17	2.6	17	86	3	65	6	2	10	80	0.98
15540478--15540553	12	6.3	12	72	6	64	15	3	46	34	1.65
15540478--15540563	24	3.5	24	88	1	118	16	4	46	32	1.67
15540603--15540652	8	5.9	8	84	11	64	0	0	16	84	0.63
15540604--15540649	12	3.7	12	83	11	65	0	0	15	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15540823--15541194	48	7.9	49	88	8	553	35	28	10	25	1.90
15540823--15541194	139	2.6	140	90	7	585	35	28	10	25	1.90
15553299--15553363	33	2.0	33	87	6	96	16	3	33	46	1.63
15554710--15554787	24	3.3	23	85	8	102	16	5	44	33	1.70
15554834--15554874	16	2.5	16	80	4	55	2	2	12	82	0.86
15554824--15554886	21	2.7	24	80	14	69	6	4	9	79	1.05
15555825--15555874	26	1.9	26	95	0	91	28	24	24	24	2.00
15554960--15557172	892	2.5	888	89	2	3335	24	24	25	25	2.00
15556717--15556769	26	2.0	26	96	0	97	26	22	26	24	2.00
15557243--15557295	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160