genome.fa.s334.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  63  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13134097--13134135	21	1.9	20	84	5	51	48	2	5	43	1.38
13136272--13136562	143	2.0	143	100	0	582	31	11	9	46	1.73
13136561--13136701	3	47.7	3	70	16	71	38	5	2	53	1.36
13136510--13136585	28	2.7	28	76	11	84	38	0	9	52	1.33
13137085--13137132	20	2.4	19	82	6	60	12	6	33	47	1.66
13137601--13137671	18	4.0	17	80	14	72	21	2	1	74	1.02
13137614--13137671	17	3.4	16	82	15	71	24	0	1	74	0.92
13147019--13147092	22	3.4	22	78	0	76	39	10	9	40	1.73
13147328--13147383	22	2.5	22	82	0	67	44	8	8	37	1.67
13152676--13152731	28	2.0	28	100	0	112	35	14	7	42	1.73
13161059--13161255	94	2.1	95	93	0	333	45	14	7	32	1.73
13167805--13167898	19	5.1	18	72	23	72	57	8	5	28	1.50
13167814--13167898	37	2.3	37	87	4	118	60	7	4	28	1.43
13167814--13167898	18	4.6	19	77	13	88	60	7	4	28	1.43
13169280--13169321	7	6.1	7	83	5	59	66	4	0	28	1.12
13169282--13169320	13	2.9	14	92	3	62	69	5	0	25	1.09
13169280--13169318	20	2.0	20	89	0	60	69	5	0	25	1.09
13170153--13170442	22	13.2	22	64	13	62	30	14	22	32	1.93
13170126--13170362	110	2.2	110	84	4	300	28	15	23	32	1.95
13170203--13170404	66	3.1	66	78	5	194	31	16	21	30	1.95
13170230--13170554	66	4.8	64	72	10	188	32	16	20	31	1.95
13170472--13170540	22	3.1	22	68	15	61	42	17	11	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13170471--13170601	44	3.0	44	82	4	140	39	18	13	28	1.89
13170538--13170601	22	2.9	22	65	9	58	40	17	15	26	1.89
13172028--13172089	32	2.0	30	84	9	79	3	20	0	75	0.94
13172504--13172543	18	2.2	18	90	0	62	10	5	5	80	1.02
13173130--13173360	114	2.0	114	94	0	408	41	25	7	24	1.81
13178890--13178976	22	3.9	22	70	7	68	34	10	16	39	1.82
13178883--13179002	46	2.7	46	84	3	165	34	10	15	39	1.83
13179019--13179097	24	3.4	24	73	7	81	35	8	11	44	1.72
13179039--13179106	22	3.0	22	72	8	73	33	5	11	48	1.64
13179027--13179146	46	2.6	46	85	0	150	37	8	11	42	1.72
13179226--13179292	24	2.9	23	76	17	68	37	5	13	43	1.69
13179196--13179290	46	2.1	46	84	4	120	36	8	13	41	1.75
13179758--13179854	18	5.5	17	74	9	72	40	10	10	39	1.73
13179776--13179841	35	1.9	34	84	3	87	42	9	9	39	1.68
13179827--13179941	18	6.5	18	74	9	96	39	8	13	38	1.76
13179916--13180144	35	6.5	35	68	15	112	39	12	10	37	1.78
13180043--13180086	18	2.4	18	85	7	54	40	13	9	36	1.76
13180096--13180147	17	3.1	16	81	8	59	36	11	17	34	1.86
13180946--13180978	14	2.4	14	90	5	50	69	15	12	3	1.30
13185791--13185857	12	5.5	12	68	21	50	53	16	7	22	1.67
13185777--13185850	36	2.1	35	92	2	121	54	14	5	25	1.62
13185826--13185863	13	3.0	13	88	3	51	50	18	7	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13185878--13185964	40	2.1	41	82	2	104	54	10	3	32	1.51
13185878--13185945	22	3.3	22	72	16	63	54	8	2	33	1.47
13187995--13188044	24	2.1	24	85	3	66	80	0	8	12	0.92
13187991--13188044	18	3.1	16	82	15	63	79	0	9	11	0.93
13188986--13189020	3	11.7	3	93	0	61	65	2	0	31	1.07
13198172--13198205	10	3.4	10	83	0	50	23	11	17	47	1.81
13199563--13199669	51	2.1	51	85	3	144	24	6	13	56	1.61
13199581--13199677	51	1.9	51	95	0	176	26	5	10	57	1.53
13200040--13200108	30	2.3	31	80	10	79	21	7	20	50	1.72
13200264--13200304	20	2.1	20	86	4	57	19	4	9	65	1.40
13204833--13205247	145	2.9	143	80	4	413	32	13	10	42	1.80
13217832--13217878	11	4.4	11	84	7	53	82	0	4	12	0.80
13218813--13218895	37	2.2	37	84	0	103	32	12	16	38	1.86
13218930--13219023	37	2.6	36	76	3	98	28	13	22	35	1.92
13218979--13219125	52	2.9	50	84	5	170	30	14	19	35	1.92
13219366--13219408	22	2.0	22	90	9	70	32	23	11	32	1.90
13221512--13221628	59	2.0	59	94	0	207	47	11	15	25	1.80
13223470--13223519	19	2.6	19	96	0	91	24	14	16	46	1.83
13223793--13223827	16	2.2	16	94	0	61	0	14	0	85	0.59
13223786--13223827	10	3.9	11	81	12	52	0	14	2	83	0.75
13224937--13224971	18	1.9	18	88	0	52	68	0	2	28	1.04
13230839--13230993	77	2.0	77	100	0	310	34	19	18	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13231160--13231223	9	6.9	9	79	13	60	84	0	14	1	0.70
13231160--13231222	14	4.5	14	77	16	60	84	0	14	1	0.71
13231160--13231213	24	2.3	23	84	12	74	85	0	12	1	0.69
13231727--13231797	18	3.7	19	71	15	65	74	2	21	1	1.02
13232160--13232195	15	2.3	15	90	4	54	80	0	19	0	0.71
13233630--13233674	23	2.0	23	86	8	65	48	2	17	31	1.59
13233738--13233827	41	2.2	40	79	11	103	34	18	13	33	1.90
13233750--13233838	41	2.2	41	79	4	99	35	16	14	32	1.90
13233732--13234250	40	12.8	40	72	7	199	37	14	13	34	1.86
13233844--13234250	122	3.3	120	79	6	374	38	13	13	34	1.83
13234162--13234303	42	3.5	38	74	11	106	40	11	10	38	1.76
13234647--13234701	21	2.6	21	77	13	60	72	10	1	14	1.19
13234968--13235008	21	2.0	21	85	9	57	51	24	7	17	1.70
13235035--13235087	22	2.5	20	76	14	52	69	0	1	28	0.99
13236653--13236714	20	3.0	21	77	13	67	66	0	0	33	0.92
13236653--13236705	21	2.7	20	82	8	65	64	0	0	35	0.94
13236805--13236852	13	3.7	13	82	0	60	52	20	10	16	1.73
13245133--13245166	10	3.4	10	87	0	50	79	5	2	11	1.02
13245759--13245876	27	4.6	26	69	17	86	53	3	11	31	1.54
13245724--13245881	77	2.1	77	100	0	316	54	3	12	29	1.55
13250428--13250473	21	2.2	21	84	0	56	28	4	19	47	1.68
13251030--13251081	15	3.3	15	83	8	50	21	13	5	59	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13251055--13251091	17	2.3	15	90	9	56	16	24	8	51	1.71
13251045--13251091	15	3.0	16	85	11	62	19	21	6	53	1.67
13254199--13254232	18	1.9	18	94	5	61	44	0	41	14	1.45
13258095--13258135	22	1.9	22	85	14	59	19	19	9	51	1.74
13260267--13260291	12	2.1	12	100	0	50	44	16	8	32	1.76
13273554--13273593	18	2.4	17	87	8	55	70	0	0	30	0.88
13274105--13274134	10	2.8	11	95	5	53	86	0	10	3	0.67
13275920--13275964	13	3.4	14	87	9	67	51	24	6	17	1.70
13276134--13276167	16	2.1	16	89	10	52	67	2	0	29	1.05
13276903--13276961	14	4.5	13	79	14	59	15	5	25	54	1.61
13276914--13276981	26	2.6	25	80	17	77	19	4	19	57	1.57
13276926--13276981	13	4.3	13	86	6	69	19	3	19	57	1.56
13277231--13277264	14	2.5	13	86	9	50	26	2	0	70	1.01
13279993--13280219	62	3.7	61	77	8	208	37	13	16	32	1.88
13282498--13282539	19	2.2	19	95	0	75	38	0	9	52	1.34
13287525--13287570	22	2.0	24	84	16	62	32	6	4	56	1.45
13290594--13290714	52	2.3	53	84	11	151	47	11	15	25	1.79
13290662--13291025	180	2.0	180	100	0	728	45	13	15	26	1.83
13290933--13291053	55	2.2	55	79	7	129	47	10	15	26	1.78
13291964--13292002	20	2.0	20	84	0	51	2	20	5	71	1.17
13292383--13292420	11	3.7	11	90	10	55	28	0	0	71	0.87
13292381--13292419	17	2.4	16	84	16	53	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13292619--13292654	19	1.9	18	88	5	54	66	11	2	19	1.35
13293363--13293491	35	3.7	35	81	8	102	53	13	16	16	1.73
13294465--13294497	10	3.4	10	83	8	50	3	12	0	84	0.72
13294436--13294497	19	3.3	18	82	8	61	1	12	3	82	0.87
13294465--13294502	19	2.0	20	94	5	69	5	13	0	81	0.85
13301794--13301849	3	18.7	3	92	0	58	10	0	21	67	1.20
13304911--13304957	25	2.0	25	87	8	71	40	23	14	21	1.90
13305368--13305697	143	2.3	143	84	5	411	31	14	11	42	1.81
13306893--13306948	3	18.7	3	100	0	112	66	0	0	33	0.92
13310376--13310413	20	2.0	20	89	5	60	18	21	10	50	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160