genome.fa.s334.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  59  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12448443--12448477	17	2.1	16	94	5	61	68	8	0	22	1.16
12448624--12448701	22	3.7	20	80	13	66	29	21	16	32	1.96
12448650--12448701	22	2.4	22	96	0	95	30	23	15	30	1.95
12448775--12448857	23	3.7	23	78	9	84	28	22	15	32	1.95
12448929--12448988	23	2.7	23	92	2	95	23	25	21	30	1.99
12448644--12449001	153	2.3	155	85	3	454	23	22	18	35	1.95
12448799--12449105	132	2.3	130	83	4	384	22	23	19	34	1.96
12448935--12449001	22	3.0	22	86	2	62	25	23	20	29	1.99
12449067--12449110	22	2.0	22	86	0	61	27	20	18	34	1.96
12449067--12449316	133	1.9	132	87	0	365	22	20	18	38	1.93
12449222--12449444	87	2.6	87	82	2	268	21	19	18	40	1.91
12449627--12449665	14	2.9	14	88	3	62	76	10	0	12	1.01
12449633--12449685	23	2.4	21	78	12	61	79	7	1	11	1.01
12451033--12451179	16	9.5	16	73	14	121	48	32	0	18	1.48
12451034--12451178	30	4.7	31	76	9	154	48	32	0	18	1.48
12451172--12451232	14	4.2	14	77	6	59	52	34	0	13	1.40
12451157--12451198	21	2.0	21	90	0	66	50	42	0	7	1.30
12453049--12453100	23	2.3	23	83	12	63	76	7	0	15	0.99
12453070--12453101	13	2.4	14	90	10	50	78	3	0	18	0.89
12454201--12454370	42	4.0	42	85	6	211	42	20	11	25	1.85
12454712--12454832	43	2.8	43	87	0	179	33	15	10	39	1.82
12454892--12455206	25	13.3	24	76	11	269	34	13	10	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12454911--12455161	71	3.5	71	83	8	332	37	13	9	39	1.78
12454883--12455206	96	3.4	94	84	5	406	35	13	11	39	1.81
12454907--12455226	46	6.8	46	84	5	383	35	13	11	39	1.81
12455564--12455718	63	2.5	64	80	9	185	30	25	8	36	1.85
12456152--12456184	15	2.1	16	88	5	50	51	15	6	27	1.66
12456386--12456442	30	1.9	30	92	0	96	7	15	0	77	0.98
12456386--12456437	9	5.4	9	78	13	59	5	15	0	78	0.92
12459221--12459361	72	2.0	72	90	2	221	47	9	18	24	1.79
12460297--12460334	16	2.3	16	86	13	51	10	7	5	76	1.15
12460579--12460608	14	2.1	15	93	6	53	30	0	0	70	0.88
12460571--12460608	18	2.2	17	90	4	58	28	0	0	71	0.87
12460635--12460678	19	2.3	19	84	7	54	77	11	0	11	1.00
12461484--12461523	12	3.4	12	86	3	55	75	7	2	15	1.14
12468637--12468670	13	2.5	13	85	4	50	5	17	0	76	0.98
12485663--12485701	19	2.1	19	85	0	51	43	17	12	25	1.85
12486456--12486480	2	12.5	2	100	0	50	52	0	0	48	1.00
12486828--12486858	2	15.5	2	100	0	62	51	0	0	48	1.00
12493854--12493915	21	3.0	21	70	13	56	38	3	9	48	1.52
12493971--12494078	21	5.2	20	75	10	76	35	6	13	44	1.70
12494104--12494237	21	6.6	20	72	15	69	36	5	10	47	1.63
12493985--12494192	109	1.9	110	83	4	269	36	6	11	46	1.66
12494157--12494237	19	4.1	19	76	14	83	35	7	8	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12494157--12494234	20	3.9	20	76	14	72	35	7	8	47	1.64
12494416--12494462	21	2.3	19	80	20	51	40	4	6	48	1.48
12494423--12494561	10	13.3	10	68	17	70	36	5	11	46	1.62
12494449--12494590	21	6.8	21	75	12	114	33	4	13	48	1.64
12494443--12494590	42	3.5	42	76	12	126	33	5	12	47	1.65
12495457--12495541	34	2.5	34	84	1	107	40	14	9	36	1.78
12495960--12496026	34	2.0	34	87	0	98	34	20	8	35	1.84
12497040--12497106	33	2.0	33	97	0	125	28	11	4	55	1.56
12501546--12501615	4	18.8	4	94	2	96	28	0	0	71	0.86
12502058--12502101	21	2.2	20	87	4	61	79	15	2	2	0.93
12502924--12502968	18	2.5	18	79	10	56	64	0	6	28	1.19
12503138--12503169	14	2.3	15	89	10	50	59	3	0	37	1.13
12504012--12504043	12	2.4	14	85	15	50	53	0	0	46	1.00
12510569--12510610	2	21.0	2	90	0	66	50	0	0	50	1.00
12511440--12511494	21	2.5	22	76	8	58	45	1	5	47	1.36
12512048--12512100	25	2.2	25	86	10	74	45	5	1	47	1.37
12512480--12512569	32	2.8	32	83	5	92	50	7	2	40	1.44
12512489--12512571	16	5.1	16	76	1	76	50	7	1	40	1.38
12514143--12514171	11	2.6	11	100	0	58	75	0	0	24	0.80
12514276--12514319	23	2.0	22	82	13	54	52	4	0	43	1.22
12515329--12515355	2	13.5	2	100	0	54	0	48	0	51	1.00
12517478--12517532	22	2.5	21	82	11	58	56	3	0	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12518003--12518044	20	2.1	20	86	8	59	42	0	0	57	0.99
12518013--12518051	20	1.9	19	90	10	60	41	0	0	58	0.98
12518963--12519032	35	2.0	34	94	2	122	30	5	14	50	1.66
12521518--12521547	3	10.0	3	100	0	60	66	0	33	0	0.92
12524031--12524063	2	17.0	2	93	6	59	51	0	0	48	1.00
12524064--12524260	105	1.9	105	95	0	358	54	11	1	32	1.42
12524415--12524465	3	17.0	3	91	0	84	33	0	3	62	1.13
12525737--12525794	25	2.4	24	79	2	62	41	6	0	51	1.28
12526188--12526233	23	2.0	24	86	4	67	43	0	8	47	1.34
12536373--12536418	19	2.5	19	85	3	67	26	15	8	50	1.73
12536373--12536427	19	2.9	19	78	7	60	30	12	9	47	1.73
12540587--12540621	18	1.9	18	88	0	52	34	8	8	48	1.64
12541288--12541313	11	2.4	11	100	0	52	76	0	0	23	0.78
12544628--12544702	31	2.4	31	82	4	89	40	4	33	22	1.73
12547386--12547498	24	4.7	24	77	6	95	45	7	12	34	1.71
12547361--12547501	48	2.9	47	79	8	142	42	8	13	35	1.75
12552361--12552393	14	2.4	14	90	10	50	57	0	0	42	0.98
12552472--12552539	26	2.4	30	83	11	81	51	0	1	47	1.09
12552472--12552546	27	2.5	31	79	16	88	50	0	2	46	1.15
12552743--12552779	10	3.4	11	85	14	58	45	0	5	48	1.25
12552745--12552778	12	3.0	12	87	12	54	50	0	5	44	1.26
12554147--12554207	13	4.4	14	75	19	56	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12555140--12555218	31	2.6	30	76	13	79	46	10	5	37	1.60
12556017--12556044	1	28.0	1	100	0	56	100	0	0	0	0.00
12556851--12557101	73	3.4	72	79	8	222	47	5	7	39	1.54
12556921--12557090	75	2.3	73	80	7	193	47	4	7	41	1.50
12557269--12557395	66	1.9	66	85	7	177	38	7	11	42	1.69
12557777--12557809	16	1.9	18	88	11	52	36	15	0	48	1.45
12559052--12559092	5	8.2	5	84	15	50	24	0	0	75	0.80
12559050--12559089	14	2.9	15	82	14	50	25	0	0	75	0.81
12564525--12564559	17	2.1	16	89	5	52	22	2	11	62	1.41
12570573--12570629	21	2.8	20	73	21	57	28	28	21	22	1.99
12573924--12573973	12	4.2	12	73	12	50	6	14	58	22	1.58
12574023--12574070	25	1.9	25	86	0	69	14	0	8	77	0.99
12574023--12574067	21	2.2	20	84	4	54	15	0	8	75	1.03
12574241--12574784	109	5.3	101	84	10	621	33	26	11	28	1.91
12574468--12574497	13	2.3	13	94	0	51	46	16	6	30	1.73
12574432--12574545	60	1.9	61	94	1	203	36	24	12	26	1.91
12574492--12574784	48	6.0	49	87	4	432	34	26	11	27	1.91
12574490--12574776	145	2.0	145	89	2	443	34	26	11	27	1.91
12574494--12574784	97	3.0	97	93	1	494	34	26	10	27	1.90
12578122--12578161	21	1.9	21	84	0	53	17	0	7	75	1.03
12578322--12578838	48	10.8	48	75	18	422	35	24	11	28	1.90
12578636--12578841	97	2.2	90	88	10	294	35	25	9	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12589886--12589938	7	6.9	7	76	19	52	11	0	3	84	0.73
12589879--12589933	25	2.2	25	86	0	74	9	1	5	83	0.86
12591063--12591114	24	2.3	23	86	6	70	11	11	53	23	1.69
12595542--12595598	14	4.1	14	79	4	53	24	3	1	70	1.13
12595627--12595701	20	3.7	20	67	5	51	57	1	2	38	1.21
12595911--12595946	15	2.4	15	95	0	63	52	5	0	41	1.24
12596530--12596563	16	2.1	16	88	0	50	64	5	0	29	1.17
12596758--12596813	21	2.6	22	80	8	62	41	3	7	48	1.48
12596775--12596815	21	2.0	21	95	0	73	39	4	4	51	1.45
12598916--12598956	2	20.5	2	100	0	82	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160