genome.fa.s334.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  23  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6254930--6254986	26	2.3	25	82	8	64	5	5	8	80	1.00
6255175--6255294	22	5.5	22	74	1	80	30	10	23	35	1.88
6255587--6255644	23	2.5	23	83	5	64	31	15	17	36	1.91
6255663--6255734	33	2.2	33	84	0	99	30	12	15	41	1.84
6256042--6256102	20	3.1	18	75	15	59	1	14	4	78	0.99
6257557--6257898	141	2.4	142	81	5	388	19	13	8	59	1.60
6258208--6258244	12	3.0	13	80	11	51	10	5	0	83	0.79
6260414--6260447	13	2.7	13	95	4	61	79	0	0	20	0.73
6261599--6261632	12	2.8	12	86	0	50	52	2	5	38	1.41
6262047--6262121	30	2.6	30	87	4	109	56	26	1	16	1.48
6262023--6262146	58	2.1	61	80	4	137	52	27	1	18	1.55
6263843--6263891	20	2.5	20	83	6	55	22	4	6	67	1.30
6272074--6272121	19	2.6	18	87	12	62	81	4	12	2	0.93
6272087--6272122	10	3.7	10	85	7	56	86	2	11	0	0.68
6273310--6273384	35	2.2	35	82	2	89	26	20	9	44	1.81
6273391--6273485	34	2.9	33	82	4	120	18	16	11	52	1.74
6273564--6273798	101	2.3	103	81	10	288	18	15	12	52	1.74
6273635--6273711	32	2.4	32	82	6	84	15	14	12	57	1.66
6273631--6273923	69	4.3	66	73	10	220	19	15	11	52	1.73
6273671--6273982	69	4.6	69	78	5	314	19	16	11	51	1.76
6273631--6273923	136	2.2	136	81	7	337	19	15	11	52	1.73
6273621--6273853	101	2.3	101	83	8	269	19	15	11	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6273691--6273949	136	1.9	137	82	5	328	20	16	10	52	1.73
6274218--6274311	3	32.3	3	72	10	52	59	0	4	36	1.17
6274209--6274291	40	2.0	42	84	13	109	54	0	4	40	1.22
6274279--6274306	13	2.2	13	100	0	56	78	0	0	21	0.75
6275901--6275963	31	2.1	30	85	8	83	47	22	1	28	1.60
6275979--6276106	14	8.8	14	65	10	60	50	27	3	19	1.63
6278255--6278298	16	2.8	16	86	3	63	59	0	15	25	1.37
6277989--6278542	281	2.0	280	99	0	1099	42	11	16	29	1.82
6279095--6279141	21	2.2	20	85	14	60	12	8	0	78	0.95
6279589--6279636	25	1.9	25	87	8	71	6	8	12	72	1.26
6280235--6280344	41	2.7	40	75	10	100	43	13	10	31	1.79
6284332--6284883	161	3.4	161	85	3	682	33	10	14	41	1.79
6286546--6286616	3	24.0	3	91	2	72	22	0	8	69	1.15
6286837--6286883	17	2.7	18	75	15	53	55	4	0	40	1.19
6288623--6288665	18	2.4	18	100	0	86	16	27	27	27	1.97
6290514--6290538	13	1.9	13	100	0	50	32	8	12	48	1.69
6297351--6297381	14	2.2	14	94	0	53	64	0	6	29	1.18
6297457--6297524	35	1.9	35	90	0	109	54	1	5	38	1.34
6300636--6300695	30	2.0	30	100	0	120	36	16	0	46	1.47
6300636--6300711	30	2.5	30	91	4	109	32	15	0	51	1.44
6301354--6301429	25	2.8	27	78	13	68	35	6	0	57	1.25
6303565--6303605	20	2.0	20	85	0	55	41	4	0	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6303683--6303734	26	2.0	25	85	10	70	44	11	3	40	1.59
6304991--6305035	20	2.2	20	92	0	72	20	4	15	60	1.52
6306575--6306599	11	2.3	11	100	0	50	28	0	0	72	0.86
6307744--6307768	12	2.1	12	100	0	50	44	0	0	56	0.99
6308730--6308768	6	6.2	6	88	11	60	64	0	0	35	0.94
6310491--6310532	14	3.1	14	79	6	50	4	9	4	80	0.99
6311423--6311492	34	2.1	34	86	2	97	45	11	12	30	1.78
6314474--6314534	28	2.3	25	81	10	68	55	6	1	36	1.36
6318400--6318439	2	21.0	2	85	10	57	50	2	0	47	1.14
6323525--6323556	17	1.9	17	93	6	57	25	0	0	75	0.81
6323520--6323561	14	3.0	14	85	0	57	23	0	0	76	0.79
6324244--6324299	25	2.2	25	83	0	76	19	35	21	23	1.96
6325819--6325861	17	2.5	17	88	0	59	79	11	0	9	0.95
6336810--6338152	48	27.6	48	74	9	879	29	11	18	40	1.86
6337148--6337326	91	1.9	92	82	8	222	26	10	17	45	1.81
6337050--6337423	190	2.0	189	81	6	445	27	12	18	41	1.86
6336810--6338145	97	13.8	97	77	9	840	29	11	18	40	1.86
6337660--6337782	53	2.4	50	82	8	140	30	12	14	42	1.82
6338133--6338319	44	4.2	44	70	7	137	31	14	14	39	1.87
6338470--6338523	19	2.8	20	88	8	76	7	9	0	83	0.82
6342865--6342917	28	1.9	28	88	11	83	26	0	5	67	1.12
6343903--6343993	34	2.7	34	82	0	110	26	15	17	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6351896--6352745	187	4.6	184	81	6	969	35	12	11	39	1.80
6351896--6352756	373	2.3	373	85	3	1119	35	12	11	40	1.80
6353827--6353984	59	2.7	58	90	3	248	34	13	7	44	1.72
6354096--6354141	24	1.9	24	90	0	74	78	6	8	6	1.10
6354454--6354499	19	2.3	20	81	3	58	28	15	28	28	1.96
6355117--6355221	16	6.6	16	69	20	60	64	7	0	27	1.20
6355098--6355212	35	3.3	34	75	16	92	61	6	0	30	1.28
6355422--6355515	1	94.0	1	78	0	98	4	0	6	89	0.59
6355414--6355514	8	12.9	8	86	9	120	3	0	7	88	0.64
6355422--6355516	31	3.0	31	89	9	147	5	0	6	88	0.63
6355522--6355898	42	9.1	41	88	7	525	36	22	17	23	1.94
6355522--6355898	82	4.6	82	91	4	600	36	22	17	23	1.94
6357113--6357194	8	10.6	8	78	10	73	6	18	0	75	1.00
6360375--6360776	57	6.9	56	84	10	495	33	12	7	45	1.71
6360385--6360786	116	3.4	115	88	7	551	34	12	7	45	1.71
6360385--6360776	180	2.2	172	88	7	576	34	13	7	45	1.71
6360805--6360843	10	3.9	10	83	9	53	82	0	0	17	0.68
6360866--6360942	27	3.1	25	78	12	79	79	3	5	11	1.03
6360998--6361024	8	3.4	8	100	0	54	0	25	51	22	1.48
6361263--6361307	19	2.3	20	88	3	65	31	22	24	22	1.99
6361814--6361995	67	2.7	65	78	14	158	65	4	3	25	1.28
6362270--6362330	24	2.6	23	81	5	77	27	11	21	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6362314--6362366	12	4.3	12	81	13	63	26	7	24	41	1.81
6367130--6367177	23	2.1	23	88	0	69	56	6	8	29	1.53
6368664--6368802	15	9.1	15	80	4	118	22	2	26	48	1.65
6368676--6368766	31	2.9	31	86	4	121	25	3	24	47	1.67
6368693--6368766	16	4.7	16	86	3	114	25	4	22	47	1.69
6368694--6368767	8	9.6	7	72	18	58	27	4	22	45	1.70
6368647--6368782	31	4.4	30	79	11	107	25	4	23	47	1.70
6372048--6372100	13	4.2	13	73	4	54	54	0	1	43	1.11
6384299--6384342	22	2.0	22	95	0	79	20	0	34	45	1.51
6384338--6384440	14	7.2	14	73	14	77	17	0	29	53	1.44
6384396--6384449	28	1.9	28	88	7	83	24	1	20	53	1.55
6384316--6384464	58	2.6	57	80	9	169	19	0	29	50	1.53
6384813--6384843	14	2.2	14	94	0	53	22	0	0	77	0.77
6384879--6384926	3	15.7	3	83	12	62	31	2	2	64	1.16
6385698--6385723	12	2.2	12	100	0	52	0	0	7	92	0.39
6386357--6386449	12	7.8	12	75	13	57	26	3	6	63	1.34
6386415--6386557	3	47.3	3	82	9	139	30	0	6	61	1.27
6386356--6386433	38	2.1	38	82	4	95	24	3	7	64	1.37
6386818--6386863	18	2.5	19	85	3	67	26	0	32	41	1.56
6387468--6387516	18	2.7	18	84	9	55	20	2	4	73	1.10
6387799--6388038	104	2.3	104	86	1	329	44	15	7	33	1.73
6390544--6390643	30	3.4	29	71	17	89	22	1	28	49	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6390711--6390833	16	7.7	16	68	13	65	18	0	28	52	1.52
6390709--6390756	24	2.0	25	87	4	71	12	0	37	50	1.41
6390674--6390823	64	2.4	61	84	7	178	22	0	27	49	1.55
6390718--6390825	16	6.7	17	71	15	77	20	0	25	52	1.52
6390716--6390836	48	2.5	47	77	5	136	20	0	28	50	1.54
6391165--6391256	3	29.3	3	68	12	51	30	4	1	64	1.20
6391305--6391355	18	2.8	18	73	26	54	74	1	0	23	0.92
6392372--6392401	15	1.9	16	93	6	53	36	0	0	63	0.95
6392441--6392476	17	2.1	17	89	0	54	52	0	2	44	1.15
6392414--6392447	3	11.3	3	100	0	68	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160