genome.fa.s334.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  89  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16904427--16905385	481	2.0	481	91	0	1553	31	19	22	27	1.98
16906539--16906591	26	2.0	26	92	0	88	28	28	18	24	1.98
16907420--16907479	26	2.4	26	91	5	97	28	23	23	25	2.00
16907950--16908743	422	1.9	422	85	2	1121	23	27	25	23	2.00
16911362--16911414	26	2.0	26	88	0	79	28	24	18	28	1.98
16908372--16918942	888	12.0	889	85	3	13548	26	24	23	25	2.00
16913139--16913191	26	2.0	26	100	0	106	30	26	16	26	1.97
16914892--16914944	26	2.0	26	88	0	79	28	24	18	28	1.98
16916651--16916703	26	2.0	26	100	0	106	26	26	20	26	1.99
16917539--16917591	26	2.0	26	92	0	88	26	22	20	30	1.98
16924511--16924562	26	2.0	26	92	0	86	26	26	19	26	1.99
16927606--16927658	26	2.0	26	100	0	106	26	26	20	26	1.99
16927643--16928587	471	2.0	470	90	1	1484	27	21	24	27	1.99
16929827--16929879	26	2.0	26	85	0	70	26	24	16	32	1.97
16930362--16930414	26	2.0	26	88	0	79	28	26	16	28	1.97
16929588--16930659	535	2.0	534	87	4	1536	18	28	28	24	1.98
16931284--16934785	885	3.9	886	87	1	4748	26	24	23	25	2.00
16933835--16933887	26	2.0	26	96	0	97	28	26	18	26	1.98
16934110--16935479	702	2.0	703	89	2	2101	29	23	21	25	1.99
16935344--16935682	173	2.0	173	82	2	412	21	29	26	22	1.99
16936485--16936535	26	2.0	26	92	7	86	29	27	15	27	1.96
16935501--16945209	891	11.0	888	84	4	11927	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16937376--16937428	26	2.0	26	100	0	106	30	26	16	26	1.97
16940015--16940068	26	2.1	26	100	0	108	27	25	18	27	1.98
16940483--16940519	17	2.2	17	90	0	56	51	10	5	32	1.60
16939155--16945209	887	6.9	884	83	5	7184	26	24	23	25	2.00
16943519--16943570	26	2.0	26	92	0	86	26	23	19	30	1.98
16946575--16946632	26	2.2	26	81	6	64	60	8	8	22	1.53
16947001--16947051	26	2.0	26	96	0	93	27	21	21	29	1.99
16948760--16948812	26	2.0	26	92	0	88	28	28	18	24	1.98
16949652--16949703	26	2.0	26	92	0	86	26	23	19	30	1.98
16945226--16952674	889	8.4	887	85	3	9739	26	24	23	25	2.00
16950541--16950593	26	2.0	26	96	0	97	28	26	18	26	1.98
16953989--16954041	26	2.0	26	96	0	97	28	26	18	26	1.98
16955753--16955805	26	2.0	26	85	0	70	30	20	22	26	1.98
16958350--16958402	26	2.0	26	96	0	97	26	24	20	28	1.99
16952685--16961885	877	10.5	875	85	4	11492	25	24	24	25	2.00
16959227--16959279	26	2.0	26	85	0	70	26	18	24	30	1.98
16960106--16960158	26	2.0	26	96	0	97	28	26	18	26	1.98
16961671--16962044	158	2.4	159	85	2	466	20	29	28	21	1.98
16962910--16962962	26	2.0	26	92	0	88	28	28	18	24	1.98
16962751--16963121	185	2.0	185	90	2	584	21	27	28	23	1.99
16962936--16963280	159	2.2	159	84	2	442	19	26	30	23	1.98
16963254--16963306	26	2.0	26	96	0	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16964137--16964189	26	2.0	26	92	0	88	30	24	18	26	1.98
16965025--16965077	26	2.0	26	100	0	106	26	26	20	26	1.99
16964940--16965249	154	2.0	154	92	0	521	17	31	28	22	1.97
16965179--16965231	26	2.0	26	96	0	97	24	28	20	26	1.99
16966950--16967002	26	2.0	26	96	0	97	28	24	20	26	1.99
16968730--16968782	26	2.0	26	88	0	79	24	28	22	24	2.00
16969613--16969665	26	2.0	26	96	0	97	28	26	18	26	1.98
16965095--16972137	884	8.0	883	88	2	9688	25	24	24	25	2.00
16970498--16970550	26	2.0	26	96	0	97	28	24	20	26	1.99
16972070--16976414	846	5.0	863	85	3	5461	26	24	23	25	2.00
16975529--16975581	26	2.0	26	96	0	97	30	24	16	28	1.97
16977203--16977263	26	2.3	26	91	0	95	29	26	16	27	1.97
16976772--16979691	883	3.4	820	78	11	2842	26	24	23	25	2.00
16978043--16978095	26	2.0	26	96	0	97	26	24	20	28	1.99
16978935--16978985	26	2.0	26	92	0	84	27	29	15	27	1.96
16977588--16979696	883	2.4	886	86	3	2900	26	24	23	25	2.00
16979637--16980006	159	2.3	159	83	1	465	18	28	29	24	1.98
16979789--16981770	889	2.2	884	86	3	2783	25	24	24	25	2.00
16982249--16982600	190	1.9	190	88	2	537	20	30	23	24	1.98
16983311--16983653	190	1.8	190	90	0	560	22	32	22	22	1.98
16983784--16983836	26	2.0	26	92	7	90	26	26	18	28	1.98
16984670--16984720	26	2.0	26	88	0	75	31	29	9	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16983501--16986438	885	3.3	883	87	2	4113	25	24	24	25	2.00
16985555--16985607	26	2.0	26	100	0	106	26	26	20	26	1.99
16986020--16986071	26	2.0	27	84	3	70	59	7	7	25	1.51
16986440--16999215	888	14.3	888	77	9	11962	25	24	24	25	2.00
16988537--16988930	197	2.0	195	89	3	596	42	16	17	23	1.88
16989076--16989125	26	1.9	26	88	8	75	22	24	18	36	1.95
16989963--16990015	26	2.0	26	89	7	81	30	24	16	28	1.97
16991719--16991771	26	2.0	26	100	0	106	26	26	20	26	1.99
16992434--16992789	159	2.2	159	83	2	446	19	26	30	22	1.98
16992763--16992815	26	2.0	26	100	0	106	26	26	20	26	1.99
16993492--16993544	26	2.0	26	92	0	88	28	24	22	24	2.00
16994389--16994438	26	1.9	26	100	0	100	24	26	22	28	1.99
16995274--16995326	26	2.0	26	100	0	106	26	26	20	26	1.99
16996161--16996239	26	3.0	26	96	0	140	29	24	17	29	1.97
16997063--16997115	26	2.0	26	92	0	88	26	22	20	30	1.98
16997928--16997980	26	2.0	26	89	7	81	32	22	20	24	1.98
16999159--16999272	57	2.0	57	100	0	228	28	17	12	42	1.85
17000424--17000476	26	2.0	26	96	0	97	28	20	20	30	1.98
17001304--17001356	26	2.0	26	100	0	106	26	26	20	26	1.99
16999914--17004777	877	5.5	878	85	4	6214	26	24	23	25	2.00
17003070--17003147	26	3.0	26	94	0	129	26	25	19	28	1.99
17003988--17004040	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17006156--17006208	26	2.0	26	96	0	97	22	26	22	28	1.99
17004841--17014683	888	11.3	880	84	5	12249	25	24	24	25	2.00
17009658--17009710	26	2.0	26	92	0	88	26	22	22	28	1.99
17010521--17010573	26	2.0	26	100	0	106	26	26	20	26	1.99
17011409--17011461	26	2.0	26	85	0	70	28	20	20	30	1.98
17012260--17012315	26	2.2	26	96	0	103	30	25	17	26	1.97
17013988--17014040	26	2.0	26	88	0	79	30	24	16	28	1.97
17015689--17015741	26	2.0	26	96	0	97	28	26	18	26	1.98
17016741--17016793	26	2.0	26	81	0	61	60	11	5	22	1.52
17015905--17017041	585	1.9	585	92	1	1895	30	24	18	26	1.98
17017856--17018211	159	2.2	159	92	0	577	19	28	29	22	1.98
17018185--17018235	26	2.0	26	92	0	84	25	23	19	31	1.98
17018893--17019259	158	2.3	159	83	3	445	20	26	26	25	1.99
17019233--17019285	26	2.0	26	100	0	106	26	26	20	26	1.99
17020121--17020172	25	2.0	26	89	10	81	26	25	19	28	1.98
17020728--17021077	159	2.2	159	88	1	504	20	28	28	22	1.99
17021938--17021990	26	2.0	26	88	0	79	26	20	20	32	1.98
17020874--17031873	888	12.5	887	86	3	14316	25	24	23	25	2.00
17022815--17022867	26	2.0	26	100	0	106	26	26	20	26	1.99
17026315--17026367	26	2.0	26	85	7	72	30	22	16	30	1.96
17027197--17027246	26	1.9	26	100	0	100	26	26	20	28	1.99
17028089--17028141	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17029872--17029924	26	2.0	26	100	0	106	26	26	20	26	1.99
17032525--17032574	22	2.3	22	80	13	59	42	2	2	54	1.23
17032948--17032984	16	2.3	16	90	0	56	51	2	0	45	1.15
17032955--17033012	21	2.7	21	82	12	64	43	6	0	50	1.29
17032972--17033012	21	1.9	22	95	5	75	39	9	0	51	1.35
17033028--17033085	18	3.1	18	75	22	57	51	3	0	44	1.18
17033154--17033185	15	2.1	15	94	0	55	43	6	3	46	1.44
17033151--17033253	32	3.2	32	76	16	90	46	1	0	50	1.19
17033201--17033226	8	3.2	8	100	0	52	61	0	0	38	0.96
17034481--17034609	23	5.6	21	69	22	73	48	0	1	50	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160