genome.fa.s334.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  148  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28640975--28641094	59	2.1	59	90	4	190	45	6	12	35	1.68
28646011--28646290	117	2.4	116	82	4	319	45	10	22	22	1.82
28646123--28646547	118	3.6	118	80	4	432	42	13	23	20	1.87
28646643--28646778	65	2.1	65	92	0	227	41	12	16	28	1.85
28647460--28647602	52	2.7	52	81	1	142	26	11	9	53	1.66
28647482--28647604	52	2.3	52	85	1	156	25	8	8	57	1.56
28648995--28649043	23	2.1	23	88	7	73	38	26	0	34	1.57
28649293--28649433	41	3.4	41	79	5	160	46	16	8	28	1.76
28649875--28649915	21	2.0	21	90	0	64	29	17	17	36	1.92
28649947--28649977	10	3.1	10	90	0	53	41	16	9	32	1.80
28650451--28650617	79	2.1	79	78	5	176	32	20	9	36	1.86
28651315--28651362	18	2.7	18	80	3	53	8	14	2	75	1.13
28651322--28651388	8	8.0	8	74	14	55	10	14	1	73	1.17
28657024--28657077	24	2.3	24	87	3	74	33	27	0	38	1.57
28657668--28657728	27	2.2	27	88	2	86	9	6	1	81	0.92
28657679--28657728	9	5.9	8	77	13	55	12	4	2	82	0.90
28657679--28657728	18	2.9	17	85	5	73	12	4	2	82	0.90
28662292--28662321	16	1.9	16	93	6	53	10	3	0	86	0.67
28662366--28662433	21	3.4	19	77	8	64	73	4	1	20	1.08
28662435--28662474	18	2.2	18	86	8	55	72	5	12	10	1.26
28662431--28662475	24	1.9	23	86	4	63	73	4	11	11	1.23
28667057--28667091	18	1.9	18	94	0	61	60	5	8	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28667874--28667985	30	3.7	30	78	4	100	41	11	0	45	1.46
28670056--28670110	27	2.0	28	92	3	94	29	0	5	65	1.15
28672054--28672078	2	12.5	2	100	0	50	52	0	0	48	1.00
28673250--28673331	42	2.0	42	85	0	110	41	20	7	30	1.80
28674933--28675031	28	3.5	28	88	0	144	22	1	34	42	1.60
28677870--28677909	21	1.9	21	85	10	55	45	10	25	20	1.81
28678635--28678794	28	5.8	28	86	0	196	21	1	31	45	1.60
28684235--28684318	42	2.0	42	88	4	125	41	15	7	35	1.75
28690192--28690230	20	2.0	20	85	9	55	33	17	28	20	1.96
28694954--28694995	23	2.0	21	82	17	52	61	7	2	28	1.35
28695301--28695342	16	2.6	16	78	14	50	42	0	2	54	1.13
28695488--28695522	14	2.5	14	85	0	52	48	0	0	51	1.00
28697699--28697737	13	3.0	13	96	0	69	15	35	15	33	1.89
28698550--28699020	252	1.9	252	86	3	680	29	18	26	25	1.98
28713666--28713709	2	22.5	2	90	4	72	54	0	45	0	0.99
28715676--28715704	2	14.5	2	100	0	58	0	51	0	48	1.00
28730854--28730880	13	2.1	13	100	0	54	25	0	0	74	0.83
28732436--28732482	24	2.0	24	91	0	76	27	12	8	51	1.69
28738536--28738598	19	3.2	19	67	20	56	61	12	15	9	1.55
28764603--28764654	14	3.7	14	78	14	54	51	0	1	46	1.12
28776605--28776669	4	16.8	4	84	6	62	44	20	6	29	1.75
28776641--28776683	2	21.5	2	80	0	50	51	9	0	39	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28776625--28776681	30	1.9	30	92	0	96	49	14	1	35	1.53
28776636--28776679	22	2.0	22	90	0	70	50	13	0	36	1.42
28776629--28776683	26	2.1	26	93	0	92	49	12	1	36	1.52
28785970--28786028	30	1.9	31	93	3	102	35	15	10	38	1.81
28787899--28787994	50	1.9	50	91	0	156	31	17	17	33	1.94
28788060--28788160	50	2.0	50	98	0	193	37	15	28	17	1.91
28788378--28788474	50	1.9	50	91	0	158	32	17	16	32	1.92
28789239--28789311	6	11.7	6	78	8	65	1	50	2	45	1.24
28796691--28796749	21	2.6	24	76	15	72	30	3	0	66	1.08
28796681--28796744	28	2.3	27	78	10	76	26	3	0	70	1.02
28796735--28796793	27	2.3	26	82	14	77	22	6	0	71	1.09
28796684--28796839	24	6.7	23	71	19	94	25	5	0	68	1.16
28796735--28796816	20	3.9	20	73	19	69	21	7	1	69	1.20
28797225--28797313	5	16.8	5	75	22	76	17	6	0	75	1.02
28797238--28797313	22	3.7	20	76	22	77	18	5	0	76	0.97
28797233--28797318	17	5.0	17	74	16	79	18	6	0	74	1.04
28797225--28797318	27	3.6	24	78	18	84	18	7	0	74	1.04
28797339--28797552	60	3.6	60	89	5	310	44	5	9	40	1.59
28801083--28801115	14	2.3	15	89	5	50	87	0	9	3	0.63
28801263--28801301	18	2.2	18	100	0	78	23	10	0	66	1.22
28801501--28801578	8	9.6	8	78	13	79	78	0	14	7	0.96
28802695--28802744	22	2.3	22	82	6	57	38	10	18	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28803306--28803678	41	9.0	41	81	6	315	23	14	21	40	1.90
28803694--28803727	16	2.1	16	94	0	59	88	5	2	2	0.70
28803942--28804000	22	2.6	23	76	15	61	30	5	0	64	1.15
28803961--28804076	21	5.2	23	74	21	72	25	6	0	67	1.21
28803932--28804001	28	2.5	28	75	15	81	27	4	0	68	1.08
28803935--28804022	17	5.3	16	72	18	65	26	4	0	69	1.08
28803961--28804022	24	2.6	24	85	10	74	25	4	0	69	1.08
28804474--28804552	17	4.6	17	81	13	83	16	6	0	77	0.97
28804474--28804552	5	14.8	5	79	18	72	16	6	0	77	0.97
28804474--28804542	23	3.0	22	83	12	95	15	7	0	76	0.99
28804528--28804552	13	1.9	13	100	0	50	20	0	0	80	0.72
28804487--28804552	18	3.8	16	82	13	78	16	4	0	78	0.90
28804469--28804552	23	3.6	23	78	15	93	16	7	0	76	1.00
28804557--28804729	58	2.9	58	76	13	165	47	6	9	36	1.62
28808417--28808444	2	14.0	2	100	0	56	50	0	0	50	1.00
28812786--28812836	14	3.5	15	76	13	52	39	0	3	56	1.18
28813973--28814010	18	2.1	18	85	9	51	57	0	0	42	0.98
28829737--28829780	22	2.0	22	87	12	65	50	0	0	50	1.00
28829737--28829792	21	2.6	22	80	5	62	48	1	0	50	1.11
28831522--28831753	115	2.0	115	88	1	349	43	10	11	34	1.74
28857064--28857099	2	18.0	2	94	0	63	2	50	0	47	1.15
28858302--28858424	45	2.7	46	80	7	137	46	12	22	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28863278--28863322	23	2.0	23	82	8	56	42	11	11	35	1.76
28868561--28868585	13	1.9	13	100	0	50	32	0	0	68	0.90
28868666--28868707	20	2.0	22	86	9	61	52	2	0	45	1.13
28871068--28871114	21	2.1	24	84	11	64	36	4	6	53	1.46
28876095--28876159	12	5.9	11	75	17	55	41	1	1	55	1.18
28883487--28883511	7	3.6	7	100	0	50	16	44	0	40	1.47
28884381--28884409	3	9.7	3	100	0	58	65	0	0	34	0.93
28887277--28887305	13	2.1	14	93	6	51	51	20	0	27	1.47
28892731--28892756	12	2.2	12	100	0	52	46	0	0	53	1.00
28896720--28896789	31	2.3	31	81	13	83	45	1	0	52	1.09
28907903--28907948	23	2.0	23	87	8	67	39	21	8	30	1.84
28915920--28915977	3	19.3	3	92	0	98	29	1	1	67	1.11
28918002--28918035	17	2.0	17	100	0	68	29	5	23	41	1.78
28919888--28919928	16	2.5	17	88	4	57	43	0	0	56	0.99
28920412--28920447	16	2.2	16	90	9	56	38	0	0	61	0.96
28920411--28920454	17	2.7	16	83	13	54	36	0	0	63	0.95
28921759--28921796	16	2.3	16	95	4	67	42	15	15	26	1.87
28929867--28929914	3	16.0	3	91	0	78	33	4	0	62	1.14
28954689--28954743	28	2.0	28	100	0	110	25	7	18	49	1.73
28966672--28966706	18	1.9	18	88	0	52	2	8	5	82	0.91
28968626--28968694	33	2.1	33	83	5	86	46	5	10	37	1.62
28973781--28973811	15	2.1	15	93	0	53	45	22	6	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28978718--28978742	4	6.2	4	100	0	50	24	0	0	76	0.80
28986353--28986381	2	14.5	2	100	0	58	48	0	0	51	1.00
28993566--28993603	18	2.1	18	100	0	76	28	21	15	34	1.94
28999584--28999627	19	2.3	20	84	7	56	11	29	18	40	1.85
29005977--29006053	35	2.2	35	83	4	102	36	9	16	37	1.81
29008359--29008416	29	2.0	29	100	0	116	13	10	31	44	1.78
29009260--29009324	13	5.2	13	79	7	71	49	24	3	23	1.64
29009260--29009324	25	2.6	25	87	0	94	49	24	3	23	1.64
29009319--29009370	12	4.3	12	82	0	59	40	28	7	23	1.82
29009317--29009370	24	2.2	24	80	6	65	40	27	7	24	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160