genome.fa.s334.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  51  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11038149--11038369	48	4.4	49	79	7	223	34	12	13	39	1.82
11038402--11038720	104	3.1	103	76	4	302	35	15	12	36	1.85
11041252--11041302	3	17.0	3	100	0	102	66	0	0	33	0.92
11041956--11041984	3	9.7	3	100	0	58	65	0	0	34	0.93
11042866--11042898	10	3.4	10	87	4	50	39	0	0	60	0.97
11042866--11042904	19	2.0	20	90	5	62	43	0	0	56	0.99
11045088--11045221	70	1.9	71	82	1	171	34	12	7	45	1.70
11047468--11047624	52	3.0	51	77	9	165	26	21	8	43	1.82
11048336--11048370	11	3.2	11	83	0	52	28	0	28	42	1.56
11048392--11048548	52	3.0	51	84	1	188	42	8	23	25	1.83
11051980--11052166	57	3.3	57	88	3	250	39	12	8	40	1.72
11053679--11053740	24	2.6	24	86	0	79	32	20	35	11	1.88
11054331--11054373	6	7.5	6	85	15	56	0	2	9	88	0.60
11054331--11054373	11	3.8	11	85	14	61	0	2	9	88	0.60
11054331--11054373	17	2.5	17	85	14	70	0	2	9	88	0.60
11054331--11054376	14	3.1	15	81	12	60	0	2	10	86	0.64
11054392--11054545	44	3.5	43	85	6	186	37	21	15	25	1.93
11054392--11054650	42	6.0	42	83	1	257	40	18	15	25	1.90
11054589--11054711	65	1.9	65	84	3	167	45	16	13	25	1.83
11054655--11054800	41	3.6	41	91	1	213	39	21	15	24	1.91
11055784--11055907	63	2.0	63	93	0	212	30	25	8	36	1.85
11056609--11056666	21	2.9	21	82	14	77	5	17	0	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11056594--11056668	9	8.1	9	74	11	53	6	16	0	77	0.97
11060646--11060837	58	3.3	58	89	3	271	38	13	8	40	1.74
11062359--11062442	24	3.5	24	77	3	89	27	21	35	15	1.94
11067738--11067882	52	2.8	51	86	4	209	30	23	4	41	1.75
11068160--11068221	25	2.5	24	82	10	72	22	25	11	40	1.87
11068186--11068280	25	3.8	25	83	1	102	15	32	12	38	1.85
11068776--11068874	52	1.9	52	89	4	155	26	20	8	45	1.78
11073050--11073081	15	2.1	15	94	0	55	21	0	0	78	0.76
11073048--11073094	21	2.2	22	88	11	71	23	0	0	76	0.78
11073063--11073260	27	7.9	26	72	16	118	31	3	2	63	1.23
11073169--11073239	23	3.1	23	82	8	99	30	2	1	64	1.16
11073155--11073214	19	3.2	20	76	9	54	30	1	1	66	1.11
11073139--11073237	46	2.1	48	85	10	134	29	2	3	65	1.18
11073181--11073222	20	2.2	19	86	4	57	28	2	0	69	1.01
11074027--11074082	3	18.7	3	87	7	78	26	1	1	69	1.08
11074108--11074141	5	6.4	5	93	6	50	17	0	0	82	0.67
11074111--11074142	6	5.7	6	89	10	50	15	0	0	84	0.63
11074108--11074142	11	3.2	11	88	11	54	17	0	0	82	0.66
11074180--11074461	58	4.8	59	80	9	308	43	4	13	38	1.65
11074194--11074346	29	5.2	28	65	23	75	44	5	12	37	1.66
11076839--11076868	11	2.9	10	90	9	51	36	0	13	50	1.42
11077344--11077462	3	41.7	3	77	14	119	28	1	0	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11077430--11077470	5	7.8	5	91	8	64	19	0	0	80	0.71
11080894--11080923	15	2.0	15	93	0	51	20	23	6	50	1.71
11088142--11088191	12	3.8	13	78	17	50	78	0	12	10	0.98
11088140--11088195	21	2.7	20	76	15	60	78	0	10	10	0.96
11089210--11089678	44	11.0	43	85	3	449	24	15	19	40	1.91
11089231--11089681	125	3.5	130	84	4	431	24	16	19	39	1.91
11089891--11089946	21	2.8	19	79	10	67	33	1	1	62	1.16
11089917--11090055	27	5.4	28	72	20	124	31	5	2	61	1.30
11089917--11090055	54	2.7	51	76	16	144	31	5	2	61	1.30
11089983--11090047	23	2.8	23	81	11	87	29	3	0	67	1.05
11089885--11090056	77	2.3	76	82	9	194	30	4	2	62	1.26
11090865--11090994	3	44.0	3	69	17	76	26	3	3	66	1.23
11090857--11090917	21	2.8	23	80	14	76	26	4	0	68	1.09
11090952--11090993	5	8.0	5	94	5	66	19	0	0	80	0.70
11096244--11096276	15	2.2	15	100	0	66	18	42	0	39	1.50
11099017--11099080	28	2.3	26	79	10	74	15	4	4	75	1.14
11099068--11099101	18	1.9	18	88	5	52	5	0	14	79	0.91
11099038--11099130	49	1.9	49	80	6	109	13	2	10	73	1.19
11099150--11099267	46	2.6	46	80	1	121	38	16	11	32	1.86
11102031--11102079	22	2.2	22	82	7	55	4	16	2	77	1.01
11102046--11102095	26	2.0	25	84	11	66	4	22	0	74	0.99
11103272--11103303	14	2.1	16	88	11	50	3	6	9	81	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11105974--11106023	20	2.6	19	81	6	64	60	14	2	24	1.45
11106313--11106337	13	1.9	13	100	0	50	32	20	8	40	1.81
11106775--11106818	12	3.7	12	81	0	61	63	6	4	25	1.38
11106775--11106830	6	9.5	6	74	3	51	62	7	3	26	1.38
11106780--11106830	23	2.2	24	82	10	70	62	5	3	27	1.36
11108881--11108932	16	3.1	16	83	10	52	9	11	0	78	0.95
11108893--11108947	15	3.6	15	78	9	58	9	9	0	81	0.87
11108893--11108947	16	3.7	14	77	17	58	9	9	0	81	0.87
11120361--11120407	10	4.4	11	81	7	53	17	2	2	78	0.94
11120378--11120407	6	5.2	6	92	8	53	16	0	0	83	0.65
11120430--11120475	23	2.1	22	81	18	53	78	2	0	19	0.86
11120916--11120950	17	2.1	17	88	0	52	25	22	17	34	1.96
11126242--11126279	14	2.7	14	100	0	76	31	0	0	68	0.90
11126568--11126628	4	15.2	4	74	19	56	67	1	1	29	1.10
11126568--11126636	11	6.5	11	80	6	72	66	2	1	28	1.14
11126568--11126628	15	4.1	15	75	12	63	67	1	1	29	1.10
11126567--11126648	41	2.0	41	92	0	137	63	3	2	30	1.24
11126609--11126642	11	3.1	11	91	0	50	70	5	2	20	1.21
11126638--11126668	11	2.8	11	90	0	53	54	12	0	32	1.38
11130684--11130717	14	2.4	14	90	0	50	58	0	5	35	1.22
11130878--11130947	36	1.9	37	85	8	99	50	1	0	48	1.09
11130871--11130970	19	5.7	18	76	14	77	50	1	1	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11131002--11131163	37	4.8	32	70	17	114	40	2	1	56	1.21
11130995--11131156	82	2.0	83	85	7	222	40	2	1	55	1.21
11131122--11131163	22	1.9	22	100	0	84	45	0	0	54	0.99
11133149--11133180	2	16.0	2	100	0	64	50	0	0	50	1.00
11133620--11133644	2	12.5	2	100	0	50	52	0	0	48	1.00
11134710--11134747	16	2.2	18	86	9	53	39	0	10	50	1.37
11134739--11134787	21	2.3	21	82	3	53	61	2	0	36	1.08
11136090--11136155	21	3.2	20	73	21	66	36	6	1	56	1.34
11136125--11136180	27	2.0	29	86	6	80	41	1	0	57	1.09
11140568--11140607	21	1.9	21	85	10	55	52	10	0	37	1.35
11140567--11140614	21	2.3	21	78	7	53	58	8	0	33	1.28
11149381--11149448	29	2.3	30	82	10	86	47	8	0	44	1.34
11149381--11149456	29	2.6	28	73	21	66	47	9	0	43	1.35
11150431--11150523	22	4.2	22	69	5	80	50	3	8	37	1.49
11150510--11150573	22	2.9	22	73	13	60	56	4	3	35	1.36
11150663--11150704	22	1.9	22	90	9	68	45	4	7	42	1.52
11150734--11150798	34	1.9	34	84	6	87	58	0	4	36	1.19
11150767--11150892	22	5.9	22	69	9	80	53	3	7	34	1.47
11150647--11150924	44	6.4	44	70	10	117	51	3	8	36	1.51
11150822--11150884	19	3.2	19	76	12	54	47	6	9	36	1.62
11150845--11150898	22	2.5	22	87	0	81	50	9	5	35	1.58
11150750--11150914	22	7.6	22	73	13	76	54	3	6	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11151039--11151102	22	3.0	22	82	11	78	43	9	7	39	1.66
11151400--11151614	22	9.7	23	72	11	78	50	6	8	34	1.58
11151653--11151714	22	2.9	21	72	11	54	50	9	8	32	1.65
11151756--11151838	22	3.8	22	73	12	73	54	7	10	27	1.61
11152308--11152349	18	2.1	21	83	12	54	52	0	4	42	1.22
11152444--11152506	22	2.9	22	80	2	74	55	11	1	31	1.44
11152475--11152569	21	4.5	21	72	5	66	45	9	6	38	1.62
11152480--11152582	42	2.5	42	78	0	116	46	7	7	37	1.62
11152480--11152583	21	4.9	20	68	9	55	46	7	7	38	1.61
11152562--11152616	27	2.0	27	89	0	83	49	7	5	38	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160