genome.fa.s334.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  82  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15951338--15951390	26	2.0	26	88	0	79	28	16	24	30	1.97
15952227--15952276	26	2.0	25	88	11	75	28	18	26	28	1.98
15953135--15953187	26	2.0	26	88	0	79	30	18	22	28	1.98
15949707--15960521	888	12.2	889	87	2	14739	25	24	24	25	2.00
15954024--15954076	26	2.0	26	85	0	70	24	20	24	30	1.99
15954910--15954962	26	2.0	26	89	7	81	26	15	26	32	1.95
15955799--15955851	26	2.0	26	100	0	106	26	20	26	26	1.99
15958413--15958465	26	2.0	26	96	0	97	26	18	26	28	1.98
15959303--15959355	26	2.0	26	92	0	88	28	15	24	32	1.95
15960190--15960242	26	2.0	26	96	0	97	26	18	26	28	1.98
15967028--15967106	26	3.0	26	88	3	106	30	18	24	26	1.98
15968723--15968775	26	2.0	26	96	0	97	24	20	28	26	1.99
15969611--15969663	26	2.0	26	100	0	106	26	20	26	26	1.99
15970496--15970548	26	2.0	26	92	0	88	28	22	24	24	2.00
15967933--15972996	889	5.7	885	88	2	7131	25	23	24	25	2.00
15971382--15971434	26	2.0	26	88	0	79	28	18	22	30	1.98
15967933--15972996	885	5.7	884	88	2	7015	25	23	24	25	2.00
15972075--15972105	12	2.6	12	100	0	62	38	19	29	12	1.89
15974428--15974480	26	2.0	26	92	0	88	28	18	24	28	1.98
15973601--15975154	774	2.0	772	88	1	2317	26	22	24	26	2.00
15975320--15975372	26	2.0	26	100	0	106	26	16	26	30	1.97
15976201--15976252	25	2.0	26	92	3	88	25	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15974373--15978004	889	4.1	887	86	3	4921	25	24	24	25	2.00
15980192--15980244	26	2.0	26	92	0	88	26	16	26	30	1.97
15980992--15981017	4	6.5	4	100	0	52	0	26	73	0	0.84
15982384--15982435	26	2.0	26	92	0	86	28	17	25	28	1.97
15979915--15983174	734	4.5	729	88	2	4683	26	22	23	27	2.00
15982409--15985764	884	3.8	885	85	5	4350	25	23	24	26	2.00
15986559--15986611	26	2.0	26	96	0	97	28	20	24	26	1.99
15989169--15989224	26	2.2	26	86	0	76	28	17	21	32	1.96
15987657--15990995	885	3.7	884	84	4	3961	25	23	23	26	2.00
15991672--15991733	26	2.3	26	91	5	97	29	17	25	27	1.98
15992564--15992615	26	2.0	26	100	0	104	26	19	26	26	1.99
15993432--15993484	26	2.0	26	85	0	70	33	18	22	24	1.97
15994321--15994373	26	2.0	26	92	0	88	28	18	28	24	1.98
15990940--15999829	889	10.1	888	86	4	11600	25	24	24	25	2.00
15996910--15996962	26	2.0	26	100	0	106	26	20	26	26	1.99
15997802--15997854	26	2.0	26	92	0	88	26	16	26	30	1.97
15998690--15998742	26	2.0	26	85	0	70	28	18	24	28	1.98
15999577--15999628	26	2.0	26	84	0	68	30	15	23	30	1.95
15996049--15999829	887	4.3	890	88	1	5343	25	24	24	25	2.00
16000401--16000453	26	2.0	26	88	0	79	30	16	24	28	1.97
15999011--16000652	824	2.0	821	88	1	2464	25	24	23	26	2.00
16001995--16002047	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16003742--16003794	26	2.0	26	92	0	88	26	16	26	30	1.97
16004632--16004684	26	2.0	26	85	0	70	30	16	24	28	1.97
16006412--16006462	26	2.0	26	96	0	93	27	17	25	29	1.98
16007271--16007323	26	2.0	26	92	0	88	26	16	26	30	1.97
16008137--16008189	26	2.0	26	92	7	90	26	16	26	30	1.97
16009905--16009956	25	2.0	26	92	3	88	26	19	26	26	1.99
16001275--16019917	888	21.1	888	84	4	22821	25	24	24	25	2.00
16011655--16011707	26	2.0	26	85	7	72	28	22	24	24	2.00
16012572--16012622	26	2.0	26	88	7	77	27	13	27	31	1.94
16014340--16014392	26	2.0	26	92	0	88	28	18	24	28	1.98
16015222--16015274	26	2.0	26	92	0	88	28	22	22	26	1.99
16017872--16017924	26	2.0	26	96	0	97	26	18	26	28	1.98
16018763--16018813	26	2.0	26	96	0	93	27	17	25	29	1.98
16019648--16019726	26	3.0	26	90	0	122	25	17	27	29	1.98
16019700--16020044	159	2.2	159	84	3	442	20	28	28	22	1.98
16020697--16020748	25	2.0	26	88	3	79	26	21	25	26	1.99
16021585--16021637	26	2.0	26	88	0	79	28	18	22	30	1.98
16020335--16022369	892	2.3	885	88	2	2987	25	24	23	25	2.00
16022326--16022419	47	2.0	47	100	0	188	17	51	21	10	1.75
16022521--16022573	26	2.0	26	100	0	106	26	20	26	26	1.99
16023113--16023160	25	1.9	25	91	0	78	27	18	27	27	1.98
16024144--16024196	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16023952--16024626	366	1.9	360	84	6	905	25	28	27	19	1.99
16025392--16025444	26	2.0	26	88	0	79	28	22	20	28	1.99
16026147--16026196	26	1.9	26	95	0	91	28	18	26	28	1.98
16025032--16026525	748	2.0	746	84	5	1955	26	24	25	23	2.00
16027028--16027080	26	2.0	26	92	0	88	26	16	26	30	1.97
16027054--16027606	155	3.5	157	77	7	378	21	28	29	20	1.98
16028217--16028269	26	2.0	26	96	0	97	26	18	26	28	1.98
16030111--16030173	16	3.9	16	73	8	56	19	6	30	44	1.75
16030120--16030184	33	2.0	33	84	6	87	16	4	30	47	1.67
16031302--16031355	23	2.5	21	80	13	65	1	1	12	83	0.81
16031310--16031354	17	2.6	17	92	3	72	0	2	15	82	0.77
16031808--16032299	49	10.0	49	81	6	541	36	24	11	26	1.90
16042906--16042931	7	3.7	7	100	0	52	11	46	11	30	1.76
16044311--16044373	16	3.9	16	73	8	56	19	6	30	44	1.75
16044320--16044384	33	2.0	33	84	6	87	16	4	30	47	1.67
16045447--16045498	6	9.0	6	79	8	54	3	0	11	84	0.74
16045448--16045496	17	2.9	16	90	6	71	4	0	10	85	0.71
16045445--16045497	22	2.5	21	87	6	79	3	0	9	86	0.68
16045662--16045741	12	6.7	12	70	5	63	16	5	46	32	1.68
16045662--16045742	24	3.4	24	87	0	117	16	4	46	32	1.68
16046757--16046835	26	3.0	26	100	0	158	26	20	26	26	1.99
16047671--16047723	26	2.0	26	85	0	70	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16045890--16051195	914	5.9	890	86	4	6996	25	24	24	25	2.00
16048559--16048637	26	3.0	26	90	0	131	27	17	25	29	1.98
16053383--16053435	26	2.0	26	96	0	97	28	20	24	26	1.99
16052655--16056192	895	4.0	890	88	2	5111	25	24	24	25	2.00
16056059--16056111	26	2.0	26	96	0	97	28	20	24	26	1.99
16056338--16056391	26	2.1	26	100	0	108	25	20	25	27	1.99
16055936--16056490	279	2.0	279	86	0	779	25	27	27	20	1.99
16058121--16058171	26	2.0	26	96	0	93	29	15	25	29	1.96
16056222--16066917	889	12.2	887	77	9	9931	25	23	24	25	2.00
16059006--16059058	26	2.0	26	88	0	79	30	18	22	28	1.98
16059571--16059609	17	2.3	17	100	0	78	23	48	23	5	1.70
16059921--16059973	26	2.0	26	96	0	97	28	20	22	28	1.99
16060810--16060862	26	2.0	26	100	0	106	26	20	26	26	1.99
16061694--16061747	26	2.1	26	92	0	90	27	20	25	25	1.99
16064303--16064355	26	2.0	26	100	0	106	26	16	26	30	1.97
16066005--16066057	26	2.0	26	100	0	106	26	20	26	26	1.99
16067596--16067648	26	2.0	26	100	0	106	26	20	26	26	1.99
16068485--16068537	26	2.0	26	88	0	79	26	18	26	28	1.98
16070235--16070284	26	1.9	26	91	0	82	30	18	26	26	1.98
16074617--16074669	26	2.0	26	88	0	79	28	18	22	30	1.98
16075495--16075547	26	2.0	26	88	0	79	28	16	24	30	1.97
16076191--16076596	159	2.6	158	83	2	481	21	28	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16076379--16090517	889	16.0	888	85	3	17184	25	24	24	25	2.00
16079865--16079914	26	1.9	26	100	0	100	28	20	28	24	1.99
16081002--16081077	23	3.3	23	98	0	143	17	28	50	3	1.64
16081693--16081745	26	2.0	26	96	0	97	26	18	26	28	1.98
16082582--16082634	26	2.0	26	85	7	72	26	22	24	26	2.00
16083475--16083526	26	2.0	26	96	0	95	30	17	23	28	1.97
16085245--16085294	26	1.9	26	91	0	82	30	20	24	26	1.98
16086132--16086184	26	2.0	26	100	0	106	26	20	26	26	1.99
16076371--16090587	892	16.1	865	83	5	15901	25	24	24	25	2.00
16089602--16089654	26	2.0	26	92	0	88	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160