genome.fa.s334.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  56  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11815464--11815507	9	5.2	9	84	15	51	70	6	0	22	1.11
11815722--11816132	41	10.0	41	87	8	579	37	23	15	23	1.93
11815722--11816132	81	5.0	80	89	6	578	37	23	15	23	1.93
11816114--11816152	20	2.0	20	100	0	78	46	10	12	30	1.75
11816071--11816193	61	2.0	61	95	3	221	40	20	13	25	1.89
11821296--11821448	57	2.7	56	91	4	245	35	11	7	45	1.67
11821582--11821628	25	1.9	24	86	4	67	78	4	2	14	0.99
11821965--11822003	19	2.0	20	85	5	53	33	20	23	23	1.97
11822638--11822728	38	2.4	39	79	17	109	58	5	0	36	1.21
11822631--11822727	40	2.4	43	74	17	111	57	5	0	37	1.21
11822710--11822753	9	5.2	9	84	15	51	70	6	0	22	1.11
11822710--11822758	25	2.0	25	84	8	64	71	6	0	22	1.08
11824889--11824922	15	2.3	15	94	0	59	14	11	17	55	1.68
11827755--11827844	12	7.3	12	88	5	72	24	2	7	65	1.30
11827794--11827844	3	17.0	3	100	0	102	33	0	0	66	0.92
11830166--11830215	19	2.5	21	80	6	59	68	10	2	20	1.29
11831606--11831646	3	14.7	3	80	14	52	29	0	0	70	0.87
11832272--11832319	3	16.0	3	100	0	96	66	0	0	33	0.92
11832272--11832375	6	17.3	6	94	4	102	53	0	12	33	1.38
11834098--11834135	20	1.9	20	88	0	58	21	39	10	28	1.86
11836761--11836827	25	2.7	25	97	2	127	29	5	4	59	1.41
11837266--11837335	30	2.4	29	79	6	70	35	0	4	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11846556--11846650	47	2.0	47	89	4	147	21	12	11	54	1.69
11848002--11848082	35	2.3	35	93	2	135	30	14	12	41	1.83
11851689--11851728	12	3.5	12	80	19	50	70	17	0	12	1.18
11863132--11863439	150	2.0	150	91	5	501	44	19	12	24	1.85
11868953--11868989	12	3.5	11	85	14	51	32	8	0	59	1.27
11869863--11869900	10	4.1	10	83	16	55	42	0	0	57	0.98
11870161--11870196	3	12.0	3	100	0	72	66	0	0	33	0.92
11876110--11876161	14	3.5	15	80	20	56	80	3	5	9	0.99
11876110--11876179	13	5.1	13	76	15	61	80	4	4	11	1.00
11876110--11876168	28	2.2	26	84	6	73	81	3	5	10	0.96
11877859--11877970	44	2.6	42	80	2	125	37	21	9	31	1.86
11877901--11878012	59	1.9	59	88	0	170	36	21	11	30	1.89
11877957--11878146	44	4.4	42	80	9	179	32	18	15	33	1.93
11877907--11878030	59	2.1	59	83	0	149	35	20	12	31	1.90
11877989--11878142	44	3.6	43	87	6	188	34	17	16	31	1.92
11879116--11879165	22	2.3	22	79	6	57	32	24	10	34	1.88
11879028--11879262	118	2.0	118	80	5	269	37	16	11	34	1.85
11879972--11880287	144	2.2	143	82	4	375	35	14	8	42	1.75
11881145--11881184	18	2.3	17	82	4	53	17	17	20	45	1.86
11885188--11885231	19	2.3	19	92	0	70	31	4	9	54	1.52
11892588--11892666	34	2.3	35	78	12	83	30	1	0	68	0.98
11892658--11892702	18	2.6	18	85	3	56	13	8	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11895211--11895242	16	2.0	17	88	11	50	53	0	18	28	1.45
11917699--11917755	29	2.0	29	82	6	71	31	17	5	45	1.71
11918268--11918321	26	2.1	26	96	0	99	33	11	12	42	1.79
11919660--11919699	21	2.0	20	85	5	53	32	2	7	57	1.40
11920553--11920606	20	2.7	20	100	0	108	25	14	16	42	1.87
11926864--11927371	254	2.0	254	98	0	980	24	12	21	41	1.87
11931455--11931497	19	2.2	20	87	4	61	32	0	11	55	1.36
11931627--11931656	15	1.9	16	93	6	53	23	0	26	50	1.50
11931963--11931995	2	16.5	2	93	0	57	48	0	51	0	1.00
11932709--11932786	32	2.4	32	100	0	156	23	23	21	32	1.98
11935451--11935493	21	2.0	21	100	0	86	25	32	0	41	1.56
11947808--11947875	27	2.6	27	81	6	68	63	1	7	27	1.30
11947771--11947889	34	3.5	35	70	20	90	59	2	6	31	1.36
11947867--11947912	17	2.7	18	76	6	51	54	0	0	45	0.99
11950236--11950277	2	21.0	2	100	0	84	50	0	0	50	1.00
11951597--11951641	22	2.0	23	86	4	65	28	15	24	31	1.96
11954050--11954076	2	13.5	2	100	0	54	48	0	0	51	1.00
11959227--11959258	6	5.2	6	96	3	55	21	0	0	78	0.76
11959919--11959971	14	3.8	14	78	12	56	79	3	1	15	0.96
11960765--11960844	30	2.7	30	84	0	106	70	0	3	26	1.04
11960767--11960831	19	3.4	19	80	4	78	70	0	3	26	1.01
11960765--11960831	8	8.9	8	70	18	54	70	0	2	26	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11960765--11960834	11	6.4	11	80	9	72	70	0	2	27	1.02
11960778--11960839	19	3.3	18	82	8	70	67	0	4	27	1.10
11961225--11961500	86	3.2	84	80	9	308	44	18	11	25	1.84
11961169--11961500	43	7.7	43	74	10	252	43	18	11	25	1.84
11970245--11970325	28	2.9	28	87	3	119	35	7	20	35	1.81
11970245--11970323	27	2.9	28	88	3	115	36	7	20	35	1.81
11972503--11972546	6	7.5	6	94	2	63	45	0	0	54	0.99
11973547--11973592	4	12.0	4	79	9	51	21	0	6	71	1.08
11973546--11973591	22	2.0	23	87	4	67	19	0	6	73	1.04
11973547--11973590	11	3.9	11	81	3	52	20	0	6	72	1.07
11984678--11984723	15	3.1	15	84	9	58	82	0	10	6	0.83
11984687--11984733	11	4.3	11	83	8	60	85	0	12	2	0.70
11984687--11984733	21	2.2	22	88	3	69	85	0	12	2	0.70
11984681--11984736	9	5.9	9	83	8	58	83	0	12	3	0.76
11986535--11986665	17	7.5	17	66	21	58	33	12	12	40	1.82
11987072--11987435	65	5.7	64	69	12	149	23	20	10	45	1.82
11987079--11987369	125	2.3	128	79	7	308	24	19	10	46	1.81
11987342--11987510	66	2.6	66	78	0	187	21	17	13	47	1.81
11987513--11988089	43	13.4	44	76	5	369	29	14	12	42	1.83
11987513--11988122	86	7.1	85	78	5	415	29	14	13	42	1.84
11987558--11988122	129	4.4	128	77	4	465	29	14	12	43	1.83
11988355--11988385	6	5.2	6	92	0	53	32	3	0	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11993986--11994098	57	2.0	56	94	1	199	45	19	5	30	1.72
11998987--11999057	31	2.3	31	85	0	88	36	9	11	42	1.74
11999116--11999202	33	2.7	32	80	7	88	39	12	3	44	1.59
12001229--12001268	18	2.2	19	86	4	55	42	0	2	55	1.13
12001409--12001455	24	2.0	24	87	4	69	42	6	0	51	1.27
12002879--12002929	26	2.0	26	84	7	68	58	0	37	3	1.16
12003931--12004108	71	2.4	72	77	6	207	52	5	9	32	1.57
12004783--12004846	30	2.1	30	97	0	119	40	9	15	34	1.80
12009739--12012997	542	6.0	542	99	0	6493	26	17	14	41	1.87
12015897--12017048	573	2.0	568	88	3	1718	27	12	23	36	1.91
12024375--12024412	20	1.9	20	88	0	58	55	15	0	28	1.41
12028270--12028512	124	2.0	124	82	4	303	48	15	8	27	1.74
12036062--12036115	13	3.9	14	79	18	51	61	0	1	37	1.07
12036071--12036125	7	8.0	7	84	8	60	61	0	0	38	0.96
12036071--12036113	19	2.3	19	83	0	59	62	0	0	37	0.95
12036080--12036124	19	2.4	18	82	10	54	64	0	0	35	0.94
12036471--12036593	63	2.0	60	87	9	178	53	12	3	30	1.54
12036756--12036791	18	1.9	18	88	5	54	30	5	2	61	1.33
12038000--12038076	20	4.0	21	73	23	73	14	3	5	76	1.10
12038003--12038079	6	12.5	6	72	22	54	15	3	3	76	1.08
12038199--12038338	51	2.8	51	86	1	192	25	7	10	56	1.59
12038975--12039074	44	2.2	45	85	1	130	21	5	12	62	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12048803--12048861	22	2.7	22	86	5	75	37	8	20	33	1.83
12049431--12049760	42	8.0	41	79	5	290	25	15	21	36	1.93
12049451--12049760	82	3.8	80	81	7	320	25	16	22	36	1.94
12049701--12049814	42	2.7	42	89	2	167	22	13	18	45	1.84
12049952--12049992	8	5.0	8	88	5	55	82	2	0	14	0.76
12050718--12050762	17	2.7	17	83	12	58	77	2	0	20	0.87
12054190--12054246	27	2.1	28	80	9	64	71	0	21	7	1.08
12055962--12056241	42	6.6	42	79	6	217	39	11	12	36	1.79
12056515--12056555	18	2.2	19	91	4	66	19	2	4	73	1.13
12056515--12056574	20	3.0	20	83	7	61	16	1	8	73	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160