genome.fa.s334.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  38  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9133115--9133282	60	2.7	63	80	9	177	45	12	14	26	1.81
9133866--9134260	144	2.7	144	84	1	470	30	13	13	42	1.83
9136614--9136673	18	3.5	18	73	13	63	23	11	6	58	1.57
9136610--9136673	33	1.9	33	96	0	119	25	10	6	57	1.56
9136610--9136657	15	2.9	16	71	17	53	27	10	6	56	1.57
9138224--9138274	17	3.2	16	86	5	59	15	7	0	76	1.00
9140372--9140599	84	2.7	84	83	4	266	37	14	16	31	1.89
9140740--9140802	17	3.7	17	86	0	81	41	12	12	33	1.81
9140887--9140929	17	2.5	17	92	0	68	32	16	13	37	1.88
9141241--9141312	21	3.1	23	72	11	67	41	6	8	43	1.62
9141247--9141390	44	3.2	44	75	10	116	47	13	4	34	1.64
9141401--9141507	23	4.8	22	66	8	54	43	15	4	35	1.68
9144045--9144219	34	5.3	33	77	8	158	34	15	16	33	1.90
9144045--9144254	66	3.1	68	81	6	225	35	15	16	33	1.90
9144051--9144238	100	1.9	101	81	1	234	34	14	15	34	1.89
9144162--9144256	32	2.9	35	76	12	110	33	14	15	35	1.89
9146096--9146145	11	4.3	11	76	14	55	4	14	0	82	0.82
9146098--9146150	25	2.1	26	85	3	72	5	15	1	77	1.04
9149963--9150000	20	2.0	20	90	10	62	34	7	10	47	1.67
9150004--9150062	24	2.4	25	82	5	84	35	11	6	45	1.67
9150083--9150183	21	4.8	21	75	13	91	34	1	4	58	1.31
9150104--9150208	47	2.3	46	88	6	151	34	1	6	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9150074--9150243	24	7.4	24	73	16	146	31	2	8	57	1.42
9150081--9150243	71	2.4	66	84	11	188	32	2	7	57	1.41
9150183--9150299	56	2.1	56	90	0	180	29	4	11	54	1.54
9150213--9150275	32	2.0	32	83	0	81	28	6	9	55	1.56
9150281--9150333	18	2.9	18	81	10	63	28	3	15	52	1.59
9150371--9150491	35	3.4	35	87	3	154	26	4	16	52	1.61
9150439--9150551	17	6.1	17	65	25	52	28	5	13	53	1.61
9150421--9150550	57	2.2	58	89	5	192	27	6	15	50	1.67
9150456--9150514	22	2.6	22	92	7	93	28	5	13	52	1.61
9150478--9150551	35	2.1	36	85	7	98	29	5	13	51	1.63
9151342--9151382	13	3.0	13	86	13	64	24	9	0	65	1.22
9151342--9151379	15	2.7	14	92	8	60	26	10	0	63	1.27
9153278--9153340	25	2.5	26	80	10	69	17	3	34	44	1.65
9153277--9153393	38	3.0	38	81	13	123	17	1	32	47	1.58
9153297--9153462	15	11.3	15	74	14	89	21	1	30	46	1.59
9153369--9153418	22	2.3	22	92	0	82	28	0	26	46	1.53
9153353--9153476	22	5.5	22	74	10	67	25	0	27	46	1.58
9153354--9153462	37	2.9	36	78	10	112	24	0	28	45	1.59
9153295--9153459	7	23.7	7	69	13	99	21	1	30	46	1.59
9154752--9155216	143	3.2	143	79	4	465	40	12	12	34	1.81
9154752--9155272	143	3.6	142	77	5	417	41	12	12	33	1.81
9154853--9155300	144	3.1	141	75	9	377	39	12	13	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9157863--9157920	29	2.0	28	86	3	80	39	0	5	55	1.22
9161216--9161268	17	2.9	18	88	5	72	64	5	0	30	1.17
9161235--9161345	27	4.0	28	76	17	99	73	5	1	18	1.11
9161241--9161303	13	4.6	14	75	18	62	76	4	0	19	0.96
9161267--9161309	13	3.3	13	84	9	52	81	6	0	11	0.87
9161236--9161303	28	2.5	27	81	15	79	75	4	0	20	0.98
9161267--9161352	28	3.0	27	74	12	75	77	5	3	12	1.07
9162153--9162403	3	87.0	3	70	14	154	57	7	1	34	1.34
9162160--9162403	23	11.2	22	68	22	124	57	7	1	34	1.34
9162331--9162396	16	4.0	16	78	4	60	50	12	0	37	1.40
9162818--9162948	56	2.3	56	82	0	154	36	12	22	27	1.91
9177615--9177697	42	2.0	42	85	7	114	71	9	3	15	1.27
9177668--9177711	19	2.3	19	84	0	52	72	11	4	11	1.25
9177976--9178000	12	2.1	12	100	0	50	56	16	8	20	1.65
9178549--9178686	22	6.4	22	67	25	80	51	13	0	34	1.46
9178501--9178599	3	34.0	3	68	20	59	58	7	2	32	1.36
9178501--9178675	16	10.4	16	70	18	67	54	10	1	33	1.42
9180309--9180376	37	1.9	35	82	14	86	35	10	13	41	1.78
9182242--9182562	86	3.7	85	82	4	356	37	12	19	30	1.89
9182464--9182506	17	2.4	18	80	3	52	32	11	20	34	1.89
9182243--9182555	173	1.8	172	85	2	439	37	12	19	31	1.88
9182524--9182717	77	2.5	78	82	5	241	40	12	15	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9183082--9184074	496	2.0	496	94	0	1752	35	14	11	37	1.83
9184240--9184329	15	6.7	14	77	16	61	1	10	4	84	0.81
9184254--9184328	9	6.8	11	82	14	52	1	9	4	85	0.78
9184241--9184310	31	2.3	31	82	7	90	1	10	5	82	0.88
9184241--9184329	14	6.6	14	77	12	80	1	8	4	85	0.78
9184267--9184329	1	63.0	1	79	0	63	0	7	3	88	0.60
9188098--9188127	14	2.1	14	93	0	51	13	0	0	86	0.57
9192913--9192971	26	2.4	26	81	13	72	47	3	1	47	1.29
9193188--9193247	24	2.5	24	83	5	77	41	5	1	51	1.33
9195008--9195040	2	16.5	2	100	0	66	51	0	0	48	1.00
9195553--9195643	45	2.0	45	95	0	164	19	30	8	40	1.82
9197012--9197036	11	2.3	11	100	0	50	24	0	0	76	0.80
9197749--9197785	18	2.1	18	89	0	56	40	2	0	56	1.13
9197791--9197869	23	3.5	22	80	18	74	49	2	1	46	1.23
9197814--9197851	16	2.4	16	82	8	51	52	2	0	44	1.14
9199597--9199644	22	2.2	22	84	0	60	35	29	8	27	1.86
9199690--9199761	22	3.3	21	74	14	65	33	19	16	30	1.94
9199691--9199778	44	2.0	44	82	4	106	31	21	14	31	1.94
9199756--9199818	22	2.9	22	81	6	74	38	31	6	23	1.80
9199801--9199881	22	3.7	22	69	9	58	32	24	16	27	1.96
9200310--9200426	44	2.6	45	81	4	139	35	17	11	35	1.86
9200545--9200648	37	2.7	39	77	5	115	25	13	21	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9201530--9201607	32	2.5	32	83	6	88	29	10	12	47	1.75
9201609--9201865	24	10.7	24	75	14	217	32	4	9	53	1.52
9201681--9201806	21	5.8	21	80	10	105	34	2	7	55	1.40
9201614--9201719	55	1.9	56	82	5	135	33	5	8	51	1.56
9201670--9201849	47	3.9	47	78	12	169	34	2	8	54	1.45
9201671--9201866	71	2.9	68	85	7	247	32	3	9	55	1.47
9201813--9201921	56	1.9	56	88	0	164	30	4	11	54	1.56
9201903--9201955	18	2.9	18	81	10	63	28	3	15	52	1.59
9201993--9202113	35	3.4	35	88	3	163	27	4	14	52	1.62
9202068--9202145	12	6.8	12	67	19	58	26	6	14	52	1.65
9202043--9202177	57	2.3	58	86	10	197	26	6	14	52	1.65
9202078--9202136	22	2.6	22	92	7	93	28	5	13	52	1.61
9202100--9202173	35	2.1	36	85	12	100	28	5	13	52	1.62
9204861--9204898	18	2.1	18	100	0	76	21	5	36	36	1.76
9204989--9205038	8	6.5	8	78	15	52	20	0	28	52	1.47
9204999--9205038	15	2.6	16	84	11	57	20	0	27	52	1.46
9204960--9205118	7	22.1	7	68	14	56	23	1	29	45	1.63
9204991--9205039	22	2.2	23	88	3	73	22	0	26	51	1.49
9205045--9205116	15	4.9	14	72	16	56	23	2	31	41	1.69
9205045--9205118	22	3.3	22	76	10	87	22	2	32	41	1.68
9207260--9207313	22	2.4	22	81	3	63	5	20	0	74	1.02
9207241--9207297	20	2.9	19	77	10	62	5	17	0	77	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9207802--9207826	7	3.6	7	100	0	50	12	0	0	88	0.53
9208413--9208441	4	7.5	4	92	7	51	20	0	0	79	0.74
9208671--9208707	7	5.1	7	87	6	56	67	2	2	27	1.17
9208671--9208707	15	2.5	15	91	4	58	67	2	2	27	1.17
9209451--9209521	28	2.6	28	86	6	94	50	0	1	47	1.09
9209936--9209960	2	12.5	2	100	0	50	48	0	0	52	1.00
9210678--9210712	9	3.8	9	85	7	52	5	20	0	74	1.02
9212769--9212828	24	2.5	24	81	13	79	46	1	3	48	1.28
9213260--9213300	19	2.2	19	86	8	57	48	0	0	51	1.00
9213210--9213305	47	2.0	50	83	8	126	50	2	1	46	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160