genome.fa.s334.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  46  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10223452--10223515	22	3.2	22	62	25	59	21	7	20	50	1.73
10223487--10223591	53	2.0	54	86	1	149	21	10	21	45	1.82
10223451--10223629	92	2.0	91	90	1	286	22	9	21	45	1.80
10223540--10223789	39	6.5	38	82	2	284	26	10	20	43	1.83
10223540--10223789	77	3.2	77	84	2	331	26	10	20	43	1.83
10223418--10223957	207	2.6	206	83	5	612	26	10	20	43	1.83
10223768--10223798	15	2.1	15	93	0	53	29	3	19	48	1.64
10223729--10223842	53	2.1	53	88	4	167	28	7	20	43	1.79
10223773--10223804	15	2.1	15	94	0	55	28	0	15	56	1.40
10223783--10223957	38	4.6	38	83	6	228	26	9	22	42	1.83
10223664--10223918	129	2.0	129	86	5	354	27	9	20	43	1.82
10223580--10223957	206	1.8	207	90	1	616	26	9	20	43	1.82
10224560--10224600	20	2.0	20	85	0	55	21	12	17	48	1.79
10224918--10224961	13	3.5	13	81	6	63	6	4	4	84	0.88
10224926--10224989	13	5.0	13	75	19	55	10	1	10	76	1.09
10224919--10224973	25	2.2	25	93	0	92	9	3	7	80	1.02
10224919--10225006	25	3.6	25	81	7	72	14	2	7	75	1.13
10225568--10225633	24	2.7	25	75	15	66	63	1	1	33	1.13
10235904--10235939	18	1.9	19	94	5	65	52	0	0	47	1.00
10238286--10238326	20	2.1	20	86	4	57	58	7	0	34	1.26
10238858--10238911	21	2.6	21	97	2	101	20	0	33	46	1.51
10238898--10238935	16	2.5	15	88	12	60	15	0	34	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10244438--10244777	48	7.0	48	80	8	343	39	20	12	28	1.88
10244435--10244774	98	3.5	97	82	7	361	39	20	12	28	1.88
10244438--10244774	146	2.3	148	84	6	440	39	20	11	28	1.87
10255403--10255437	12	2.8	12	86	4	52	0	2	14	82	0.77
10256831--10256873	18	2.4	18	84	7	52	30	4	0	65	1.13
10257098--10257131	17	2.0	17	100	0	68	76	5	0	17	0.98
10257272--10257298	14	1.9	14	100	0	54	22	44	7	25	1.79
10257449--10257515	28	2.4	28	84	0	89	64	7	19	8	1.46
10258600--10258649	18	2.9	16	82	11	55	68	2	4	26	1.18
10260526--10260569	16	2.6	17	86	10	56	25	6	47	20	1.74
10260611--10260689	24	3.2	25	79	13	76	13	2	8	74	1.15
10260612--10260674	18	3.7	18	79	14	62	12	3	7	76	1.13
10260630--10260691	8	7.9	8	82	13	67	14	1	11	72	1.19
10261837--10261863	9	3.0	9	100	0	54	55	0	0	44	0.99
10261835--10261881	18	2.3	20	75	24	53	57	0	0	42	0.98
10264575--10264619	21	2.1	21	84	12	56	48	2	8	40	1.47
10264688--10264742	29	2.0	29	85	7	78	54	9	16	20	1.68
10266074--10266108	17	2.0	17	88	5	52	34	11	5	48	1.63
10266287--10266755	62	7.5	62	76	10	321	39	14	14	32	1.86
10266282--10266683	188	2.1	189	79	8	453	39	12	14	32	1.84
10270029--10270097	28	2.5	28	80	0	93	47	24	4	23	1.69
10270676--10271006	171	1.9	172	82	3	407	33	13	15	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10272783--10272843	29	2.1	29	81	6	70	26	52	3	18	1.60
10274126--10274189	16	4.2	16	74	11	62	50	28	1	20	1.58
10274126--10274210	44	1.9	45	85	2	118	48	30	1	20	1.57
10274214--10274248	12	2.8	12	86	4	52	37	37	0	25	1.57
10286592--10286919	109	3.0	108	84	3	396	21	19	13	46	1.84
10286652--10286836	38	5.1	36	72	10	97	21	21	11	45	1.83
10287183--10287277	46	2.0	48	89	4	149	18	17	13	49	1.79
10287231--10287538	126	2.4	126	88	0	454	24	18	11	45	1.83
10287463--10287671	67	3.1	66	65	11	163	21	14	14	49	1.78
10288387--10288428	22	1.9	22	95	0	75	76	16	2	4	1.07
10288397--10288435	13	3.1	13	81	7	53	79	17	0	2	0.84
10289528--10289592	16	4.2	16	78	7	80	50	32	0	16	1.46
10289529--10289595	30	2.2	31	91	2	109	47	35	0	16	1.47
10295624--10296519	160	5.6	158	79	5	811	32	10	14	42	1.80
10295585--10296519	320	2.9	315	81	6	1006	32	10	14	42	1.80
10298540--10298580	13	3.2	13	80	19	50	43	0	0	56	0.99
10299993--10300420	236	1.8	236	80	6	517	52	6	9	31	1.59
10300788--10300847	24	2.6	22	74	7	57	36	6	13	43	1.70
10300917--10300968	20	2.6	20	78	0	59	44	5	13	36	1.68
10303063--10303109	17	2.7	17	75	15	51	53	6	2	38	1.39
10303061--10303118	18	3.3	18	79	9	66	50	8	1	39	1.43
10303367--10303428	32	2.0	31	83	3	79	64	16	1	17	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10304884--10304923	13	2.9	14	86	13	57	80	7	0	12	0.91
10304888--10304924	14	2.5	15	86	4	58	81	8	0	10	0.89
10306334--10306447	16	7.3	16	65	21	64	50	28	0	20	1.54
10306343--10306435	31	2.9	33	81	9	104	48	30	1	20	1.57
10306428--10306470	21	2.0	21	82	8	52	48	41	0	9	1.35
10313037--10313093	10	5.9	9	80	17	53	84	3	10	1	0.82
10313056--10313092	18	1.9	18	89	10	56	83	0	16	0	0.64
10314360--10314943	33	17.8	33	86	3	711	29	20	16	33	1.94
10315537--10315862	110	3.0	110	85	2	406	21	22	19	37	1.95
10315719--10315762	22	2.0	22	86	0	61	27	29	18	25	1.98
10315829--10315905	22	3.5	22	66	7	66	27	16	20	35	1.95
10316125--10316186	13	5.1	12	76	16	65	79	9	3	8	1.05
10316125--10316164	14	3.1	13	82	10	55	80	10	0	10	0.92
10317073--10317103	12	2.6	12	100	0	62	16	25	32	25	1.96
10317562--10317708	16	9.5	15	73	12	100	48	31	1	18	1.57
10317562--10317711	31	4.9	30	73	9	106	49	31	1	18	1.56
10317686--10317728	21	2.0	21	86	0	59	51	39	0	9	1.34
10319729--10319772	19	2.3	19	84	0	52	34	2	2	61	1.21
10333353--10333398	18	2.6	18	96	0	83	34	10	28	26	1.90
10334677--10334813	49	2.8	49	85	8	190	28	11	24	35	1.91
10334677--10334821	48	3.0	48	85	8	159	28	11	24	36	1.89
10335111--10335184	26	2.9	26	86	4	107	77	8	0	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10335114--10335150	19	2.0	18	89	5	56	78	2	0	18	0.87
10336887--10336930	19	2.3	19	88	0	61	36	4	0	59	1.18
10338225--10338279	17	3.4	16	78	14	60	10	0	14	74	1.07
10338219--10338334	26	4.6	24	73	14	67	18	0	7	73	1.07
10338225--10338279	8	6.9	8	74	13	51	10	0	14	74	1.07
10338245--10338296	18	2.8	19	86	11	65	17	0	9	73	1.09
10338279--10338330	19	2.8	18	83	13	61	28	0	1	69	0.99
10338286--10338332	12	3.9	12	81	10	60	27	0	2	70	0.99
10341777--10341839	17	3.5	17	79	12	81	17	11	12	58	1.62
10341787--10341847	20	3.2	20	77	13	83	16	16	13	54	1.72
10341777--10341848	37	1.9	37	100	0	144	16	13	12	56	1.66
10352005--10352076	32	2.2	32	95	0	126	41	8	26	23	1.82
10352320--10352379	22	2.8	22	76	14	54	20	3	38	38	1.69
10353627--10353762	48	2.8	49	81	2	166	44	22	8	23	1.81
10353634--10353804	48	3.5	48	80	3	164	43	22	8	26	1.81
10354170--10354231	26	2.3	27	81	8	74	43	12	14	29	1.83
10356060--10356110	19	2.7	19	85	14	70	7	13	1	76	1.09
10356060--10356114	20	3.1	18	80	17	69	7	14	1	76	1.08
10356062--10356116	25	2.1	24	83	12	65	5	14	1	78	1.02
10362154--10362230	26	3.0	26	75	3	84	22	27	24	25	2.00
10362310--10362342	3	11.0	3	93	0	57	30	0	3	66	1.06
10362789--10362845	10	5.5	10	73	8	51	14	1	17	66	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10363381--10363435	20	3.0	20	84	12	73	61	5	0	32	1.19
10372763--10372799	18	2.1	18	100	0	74	16	27	16	40	1.89
10373732--10373786	10	5.5	10	78	8	67	85	1	1	10	0.75
10373732--10373790	19	3.3	18	81	11	68	84	1	3	10	0.80
10374337--10374414	41	1.9	41	86	0	111	28	6	23	42	1.78
10374338--10374424	41	2.1	41	82	0	102	28	8	22	40	1.83
10374620--10375312	89	7.8	88	75	7	447	19	21	14	44	1.87
10374619--10375185	177	3.2	178	78	5	443	20	21	14	43	1.87
10375750--10375817	3	23.0	3	90	3	111	32	1	0	66	1.01
10375811--10375839	12	2.3	13	94	5	51	10	0	6	82	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160