genome.fa.s334.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  28  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7217361--7217407	2	24.0	2	83	12	62	51	0	46	2	1.13
7219545--7219588	22	2.0	22	91	4	72	25	20	6	47	1.74
7219888--7219954	27	2.5	27	73	4	64	67	2	4	25	1.24
7220347--7220372	2	13.0	2	100	0	52	50	0	0	50	1.00
7222561--7222609	25	2.0	25	88	8	73	36	8	2	53	1.43
7223256--7223390	68	2.0	68	82	2	164	26	11	8	53	1.65
7224474--7224516	22	2.0	22	90	0	68	16	0	30	53	1.43
7228941--7228971	14	2.2	14	94	0	53	32	0	0	67	0.91
7229352--7229434	18	4.5	18	73	18	64	73	1	4	20	1.08
7230276--7230398	3	43.0	3	74	15	109	65	2	3	28	1.20
7230616--7230726	55	2.0	54	82	1	132	42	14	23	19	1.88
7231113--7231332	120	1.8	121	86	1	316	46	15	22	15	1.83
7236856--7236905	17	2.8	18	87	9	75	78	4	0	18	0.91
7236903--7236949	16	2.9	16	87	9	60	72	2	4	21	1.12
7236855--7236957	13	8.4	12	73	16	77	74	2	2	19	1.07
7237198--7237367	85	2.0	85	100	0	340	37	20	12	29	1.90
7237466--7237524	20	3.0	20	82	7	75	42	28	6	22	1.79
7237885--7237955	3	25.0	3	75	16	71	63	2	2	30	1.23
7237913--7237981	5	13.2	5	74	17	52	56	1	5	36	1.32
7237885--7237953	35	2.0	35	83	11	88	63	2	2	30	1.23
7239167--7239215	23	2.2	23	89	7	75	85	4	4	6	0.81
7240522--7240652	65	2.0	65	79	5	140	23	19	10	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7241161--7241212	3	17.3	3	100	0	104	32	0	0	67	0.91
7242066--7242111	23	2.0	23	83	4	58	17	2	6	73	1.14
7252057--7252100	22	2.0	22	90	0	70	31	9	13	45	1.75
7252961--7253002	22	1.9	22	90	0	66	33	11	9	45	1.73
7262796--7262833	3	12.7	3	94	0	67	65	0	2	31	1.06
7268639--7268677	8	4.9	8	93	0	69	0	2	61	35	1.10
7275156--7275206	13	3.8	13	71	19	50	11	11	7	68	1.39
7276522--7276583	30	2.1	30	84	0	79	27	6	27	38	1.81
7277350--7277422	31	2.4	31	82	13	80	49	9	9	31	1.68
7279103--7279137	13	2.6	14	86	4	54	80	0	0	20	0.72
7279579--7279626	19	2.6	19	87	6	55	52	2	0	45	1.12
7280494--7280556	30	2.1	29	82	11	74	46	0	4	49	1.23
7280476--7280564	31	2.7	33	77	16	103	49	0	3	47	1.18
7280512--7280569	24	2.5	23	78	13	66	51	0	1	46	1.11
7282342--7282395	27	2.0	26	82	10	65	40	3	3	51	1.37
7282404--7282457	27	2.0	27	85	0	72	42	1	3	51	1.30
7282342--7282490	62	2.4	61	82	7	167	40	5	4	49	1.46
7282605--7282638	18	1.9	18	88	5	52	32	2	2	61	1.26
7286488--7286516	8	3.8	8	90	9	51	75	0	0	24	0.80
7292617--7292652	14	2.6	13	87	12	54	50	2	0	47	1.15
7293420--7293470	22	2.5	21	90	9	79	50	0	0	49	1.00
7293419--7293470	20	2.6	21	85	14	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7293803--7293864	27	2.3	26	83	2	79	61	1	6	30	1.31
7293888--7293937	24	2.1	24	92	0	82	58	4	6	32	1.41
7294517--7294550	17	2.0	17	88	0	50	32	0	11	55	1.36
7299490--7299559	29	2.3	29	81	13	81	51	0	2	45	1.16
7299889--7299959	27	2.6	28	80	6	74	52	0	0	47	1.00
7301839--7301889	21	2.4	21	80	6	59	58	3	3	33	1.35
7302092--7302132	19	2.2	18	95	4	73	46	0	4	48	1.23
7308763--7308852	4	23.0	4	81	4	67	60	2	0	37	1.09
7308763--7308852	6	15.3	6	81	4	67	60	2	0	37	1.09
7308762--7308852	12	7.6	12	82	2	76	60	2	0	37	1.09
7309260--7309300	6	6.8	6	100	0	82	14	51	0	34	1.43
7310043--7310097	22	2.7	20	78	15	58	50	3	0	45	1.19
7310444--7310481	20	1.9	20	89	10	60	34	0	5	60	1.19
7321598--7321658	31	2.0	29	87	6	86	40	8	3	47	1.49
7321598--7321949	144	2.6	133	76	10	343	45	8	5	40	1.59
7321952--7321999	15	3.3	14	80	13	53	75	2	2	20	1.02
7334285--7334324	21	2.1	19	86	13	55	42	0	5	52	1.23
7339570--7339615	22	2.1	22	87	0	65	26	6	32	34	1.82
7341005--7341063	27	2.2	28	78	9	68	35	3	5	55	1.38
7342155--7342195	9	4.4	9	87	6	55	7	29	0	63	1.21
7343676--7343706	16	1.9	16	93	0	53	64	0	0	35	0.94
7345075--7345118	19	2.4	19	88	3	63	20	2	2	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7345308--7345884	287	2.0	287	98	0	1127	37	7	6	48	1.57
7345723--7345755	17	1.9	18	88	11	52	21	6	0	72	1.05
7346360--7346570	40	5.3	39	78	5	192	40	14	12	32	1.83
7346672--7346816	40	3.8	40	82	8	178	42	15	13	28	1.84
7346670--7346816	80	1.9	74	85	10	197	42	15	12	28	1.84
7358493--7358601	52	2.1	53	83	11	136	37	10	8	44	1.68
7360289--7360323	13	2.6	13	90	4	52	22	0	0	77	0.78
7363890--7363919	15	2.0	15	93	0	51	26	3	13	56	1.52
7368303--7368327	12	2.1	12	100	0	50	0	0	8	92	0.40
7368777--7368806	13	2.2	14	94	5	53	26	6	0	66	1.16
7368818--7368854	3	12.3	3	88	0	56	67	5	0	27	1.12
7368872--7368928	25	2.2	27	81	6	73	75	10	1	12	1.12
7373741--7373861	60	2.0	60	93	1	206	35	7	1	55	1.38
7373744--7373840	30	3.2	30	66	12	81	34	6	2	57	1.35
7374508--7374554	22	2.1	23	84	4	60	55	0	4	40	1.19
7374508--7374570	23	2.8	23	82	2	65	53	0	3	42	1.16
7375514--7375562	25	2.0	25	84	8	64	48	2	2	46	1.25
7375618--7375646	4	7.2	4	100	0	58	24	0	0	75	0.80
7377364--7377407	21	2.0	21	83	12	54	50	15	0	34	1.45
7378701--7378730	12	2.6	12	94	5	53	26	10	33	30	1.89
7380141--7380201	6	10.0	6	80	16	72	18	1	1	78	0.91
7380141--7380201	11	5.0	12	83	15	72	18	1	1	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7380145--7380210	20	3.3	20	78	16	66	15	3	1	80	0.91
7380141--7380201	31	2.0	31	87	3	88	18	1	1	78	0.91
7380197--7380226	16	1.9	15	93	6	51	0	13	0	86	0.57
7380233--7380271	20	1.9	21	89	5	62	25	2	0	71	0.98
7380872--7380913	16	2.4	19	84	15	63	57	0	42	0	0.99
7381237--7381303	23	3.0	24	71	22	72	16	4	1	77	1.00
7381229--7381304	14	5.2	14	77	17	66	18	3	1	76	1.01
7381315--7381710	59	6.7	59	77	9	364	44	7	14	34	1.72
7381319--7381710	118	3.3	116	85	6	522	44	6	14	34	1.72
7392104--7392143	9	4.7	9	90	9	66	82	0	10	7	0.84
7392100--7392143	8	5.4	8	84	10	54	81	0	11	6	0.86
7392100--7392143	16	2.6	17	86	13	65	81	0	11	6	0.86
7392104--7392149	18	2.6	18	86	6	58	78	0	13	8	0.97
7393128--7393348	41	5.4	41	81	10	265	24	16	18	40	1.91
7393128--7393348	82	2.7	82	89	0	354	24	16	18	40	1.91
7393338--7393416	41	2.0	41	84	2	106	25	12	17	44	1.84
7393445--7393593	41	3.4	44	82	9	180	23	16	22	37	1.94
7393967--7393999	10	3.4	10	87	8	50	9	0	3	87	0.63
7394435--7394473	16	2.6	16	88	8	55	56	0	43	0	0.99
7394435--7394468	17	2.1	17	88	5	52	55	0	44	0	0.99
7394867--7395269	59	6.7	60	83	7	482	43	7	14	34	1.74
7394867--7395269	182	2.2	177	87	4	576	43	7	14	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7395181--7395270	27	3.1	27	66	23	67	38	5	15	40	1.71
7395687--7395716	15	2.0	15	100	0	60	20	33	20	26	1.97
7403331--7403372	15	2.9	15	78	3	50	52	35	0	11	1.38
7403360--7403441	16	5.3	16	75	11	57	51	26	3	18	1.63
7403336--7403418	37	2.2	38	83	8	116	51	31	1	15	1.51
7406034--7406079	19	2.4	18	86	13	58	71	2	6	19	1.18
7406074--7406421	119	3.0	117	78	9	325	49	7	8	34	1.60
7416630--7416855	110	2.1	110	91	1	364	41	14	14	29	1.86
7417903--7418257	158	2.2	159	79	3	392	31	11	14	42	1.81
7418175--7418352	96	1.9	94	88	2	266	28	11	15	44	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160