genome.fa.s334.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  150  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29363355--29363410	20	2.6	21	83	11	60	53	1	0	44	1.11
29363354--29363408	11	5.0	11	78	14	51	52	1	0	45	1.11
29363367--29363429	33	1.9	33	81	12	76	61	0	0	38	0.96
29363401--29363434	14	2.3	15	90	5	52	64	0	0	35	0.94
29367081--29367105	2	12.5	2	100	0	50	0	0	48	52	1.00
29380548--29380572	12	2.1	12	100	0	50	44	0	0	56	0.99
29380523--29380581	29	2.0	29	86	0	82	35	5	0	59	1.20
29380680--29380739	30	2.0	30	83	6	77	55	6	5	33	1.48
29381089--29381134	22	2.1	22	87	0	65	36	8	0	54	1.32
29381081--29381146	31	2.3	27	82	10	78	40	7	0	51	1.30
29389252--29389340	46	2.0	44	82	8	108	50	1	1	47	1.15
29389337--29389369	17	2.0	16	94	5	57	48	0	0	51	1.00
29389332--29389388	19	2.9	19	75	12	62	56	0	1	42	1.10
29389573--29389601	13	2.1	14	93	6	51	65	0	0	34	0.93
29390099--29390143	21	2.1	21	88	8	65	71	0	0	28	0.87
29398978--29399047	23	3.3	21	75	19	56	57	5	1	35	1.32
29398996--29399199	18	12.1	18	64	28	94	56	1	0	41	1.15
29398957--29399181	41	5.5	42	74	18	136	55	2	1	40	1.24
29399032--29399181	30	5.0	32	72	20	119	56	1	1	41	1.16
29398996--29399198	41	5.1	40	77	15	190	56	1	0	41	1.15
29399064--29399198	25	5.4	23	72	22	87	57	1	0	40	1.13
29399016--29399198	78	2.5	77	82	11	217	56	1	1	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29399154--29399212	23	2.5	23	83	8	57	61	0	3	35	1.13
29399229--29399316	19	4.9	18	71	17	67	46	1	0	52	1.08
29399226--29399301	18	4.1	19	68	13	59	43	1	0	55	1.08
29399285--29399325	16	2.7	15	85	7	55	48	2	0	48	1.14
29399295--29399360	26	2.6	26	88	4	91	48	1	1	48	1.20
29402277--29402309	2	16.5	2	100	0	66	48	0	0	51	1.00
29423746--29423782	2	18.5	2	100	0	74	51	0	0	48	1.00
29429786--29429810	8	3.1	8	100	0	50	24	12	0	64	1.27
29430247--29430305	27	2.3	27	82	5	68	40	0	1	57	1.09
29430294--29430351	27	2.2	27	84	6	75	53	1	1	43	1.21
29431120--29431164	23	1.9	24	86	13	67	33	2	0	64	1.06
29431144--29431222	29	2.9	28	73	17	76	46	0	1	51	1.08
29431191--29431241	21	2.4	22	75	18	63	54	0	0	45	0.99
29434224--29434266	21	2.0	21	100	0	86	23	13	9	53	1.69
29462162--29462204	19	2.3	19	84	11	61	30	2	0	67	1.03
29462195--29462228	12	2.8	12	86	0	50	14	0	2	82	0.79
29463072--29463153	29	2.9	27	75	20	69	46	1	2	50	1.22
29479422--29479453	17	1.9	17	93	6	57	25	6	6	62	1.42
29486156--29486239	19	4.1	21	71	10	68	38	1	4	55	1.28
29491926--29491971	19	2.5	18	77	22	51	47	8	0	43	1.34
29505497--29505692	105	1.9	105	97	0	374	28	17	23	30	1.97
29506616--29506649	7	5.0	7	96	3	61	0	41	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29517749--29517788	15	2.8	13	82	17	53	47	0	0	52	1.00
29517800--29517843	20	2.1	21	84	12	56	56	0	0	43	0.99
29518885--29518911	2	13.5	2	100	0	54	0	48	0	51	1.00
29519450--29519477	2	14.0	2	100	0	56	50	0	0	50	1.00
29519894--29519969	34	2.2	34	80	0	89	47	19	6	26	1.74
29520874--29520906	12	2.8	12	95	0	57	6	3	42	48	1.43
29522046--29522080	16	2.2	16	89	0	52	57	0	2	40	1.14
29522918--29522952	2	17.5	2	93	0	61	48	0	2	48	1.16
29524847--29524896	2	25.5	2	79	4	57	48	4	4	44	1.40
29527469--29527521	24	2.3	21	74	22	52	50	0	5	43	1.25
29527465--29527530	26	2.6	25	82	4	78	51	0	4	43	1.22
29527868--29527899	17	1.9	17	93	6	57	25	6	0	68	1.12
29528338--29528384	14	3.4	14	76	5	51	40	0	0	59	0.97
29534988--29535015	9	3.1	9	100	0	56	10	32	0	57	1.33
29535821--29535882	10	5.2	12	77	16	51	48	1	1	48	1.21
29538669--29538825	52	3.0	52	88	1	208	24	26	9	39	1.86
29539120--29539206	25	3.5	25	76	3	86	24	31	11	33	1.91
29539111--29539241	25	5.2	25	72	9	70	22	32	9	35	1.87
29539098--29539218	50	2.5	51	82	8	144	23	31	10	34	1.89
29539773--29539929	52	3.0	52	85	5	192	26	25	8	39	1.84
29539954--29539984	11	2.8	11	95	0	53	51	32	0	16	1.44
29540382--29540415	2	17.0	2	93	0	59	47	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29541268--29541309	20	2.2	19	87	12	59	47	0	0	52	1.00
29549556--29549672	56	2.1	56	95	0	207	41	11	15	30	1.83
29555975--29556026	20	2.3	24	84	12	67	57	0	0	42	0.98
29555994--29556040	23	2.0	24	87	4	69	53	0	0	46	1.00
29581021--29581088	30	2.3	30	97	0	127	23	17	27	30	1.97
29582517--29582558	12	3.5	13	81	15	54	35	0	0	64	0.94
29586321--29586364	21	2.1	21	100	0	88	34	18	0	47	1.49
29593023--29593048	4	6.5	4	100	0	52	46	0	0	53	1.00
29594122--29594179	29	2.0	29	93	0	98	22	12	8	56	1.62
29597213--29597246	18	1.9	17	88	5	50	32	5	8	52	1.56
29599730--29599767	20	1.9	20	84	10	51	31	7	0	60	1.25
29612099--29612146	26	1.9	26	87	8	73	50	20	25	4	1.66
29615208--29615240	15	2.3	15	89	5	50	63	0	3	33	1.10
29616978--29617011	2	17.0	2	100	0	68	0	50	0	50	1.00
29624224--29624251	2	14.0	2	100	0	56	50	0	0	50	1.00
29626003--29626058	23	2.4	23	76	8	60	55	0	0	44	0.99
29625977--29626058	34	2.5	31	74	14	76	54	0	0	45	0.99
29627377--29627432	12	4.8	12	74	14	55	37	0	0	62	0.95
29627360--29627422	21	2.7	23	72	18	60	41	0	0	58	0.98
29629748--29629825	35	2.2	35	97	0	147	7	20	15	56	1.63
29640181--29640219	20	2.0	19	85	5	51	35	5	2	56	1.35
29640791--29640823	15	2.1	17	88	11	52	57	0	9	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29649607--29649670	31	2.1	31	91	2	103	45	0	3	51	1.17
29656820--29656848	6	4.8	6	100	0	58	51	0	13	34	1.42
29659286--29659394	30	3.7	29	75	12	89	55	0	5	38	1.30
29659281--29659373	29	3.1	29	75	6	78	56	1	6	35	1.32
29663263--29663290	2	14.0	2	100	0	56	50	0	0	50	1.00
29669703--29669787	30	2.8	30	85	3	82	44	7	0	48	1.30
29669721--29669806	30	2.9	30	89	3	120	40	9	1	48	1.43
29670251--29670325	34	2.2	35	88	4	109	45	5	10	38	1.62
29670751--29670794	22	2.0	22	81	0	52	50	0	6	43	1.29
29670850--29670925	36	2.1	36	100	0	152	50	5	10	34	1.59
29677380--29677473	45	2.1	45	100	0	188	32	20	8	38	1.83
29682753--29682829	38	2.0	39	87	2	111	36	18	28	16	1.93
29686762--29686791	2	15.5	2	93	6	53	50	0	0	50	1.00
29693899--29694028	28	4.6	30	70	14	82	50	1	1	46	1.20
29693980--29694034	14	3.8	16	77	20	59	56	0	0	43	0.99
29694000--29694043	18	2.5	19	82	14	58	61	0	0	38	0.96
29694934--29694968	15	2.2	16	90	5	54	80	5	5	8	1.03
29694922--29694969	15	2.9	16	78	12	53	79	4	6	10	1.05
29695678--29695706	11	2.5	12	94	5	51	44	0	3	51	1.18
29699235--29699268	12	2.8	12	100	0	68	32	41	17	8	1.80
29704761--29704826	32	2.1	32	82	5	80	48	0	3	48	1.17
29705366--29705406	21	2.0	21	85	9	57	34	12	14	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29705405--29705472	33	2.0	34	88	8	104	57	5	1	35	1.32
29705427--29705503	21	3.7	21	83	13	72	57	5	2	35	1.35
29705456--29705509	21	2.6	21	82	8	58	53	7	1	37	1.40
29705530--29705578	21	2.4	21	83	10	57	44	8	8	38	1.64
29705650--29705725	21	3.6	22	75	7	77	46	9	3	40	1.54
29705654--29705735	42	2.0	41	85	7	112	47	8	4	39	1.56
29705929--29705969	21	2.0	21	95	0	73	46	9	4	39	1.58
29707293--29707334	15	2.8	16	79	13	54	54	0	0	45	0.99
29707290--29707333	16	2.6	17	82	13	56	54	0	0	45	0.99
29716464--29716515	22	2.3	23	80	3	61	51	5	3	38	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160