genome.fa.s334.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  80  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15692765--15697084	892	4.9	890	86	2	5712	26	24	23	25	2.00
15697038--15697116	26	3.0	26	84	0	113	29	17	22	30	1.97
15697818--15697870	26	2.0	26	88	0	79	26	16	26	30	1.97
15698698--15698750	26	2.0	26	89	7	81	28	16	24	30	1.97
15699588--15699640	26	2.0	26	96	0	97	24	22	26	26	2.00
15697194--15713779	890	18.6	888	76	9	13552	25	24	24	25	2.00
15705005--15705083	26	3.0	26	96	3	142	26	17	29	26	1.98
15705916--15705968	26	2.0	26	96	0	97	28	18	26	26	1.98
15707692--15707744	26	2.0	26	100	0	106	26	20	26	26	1.99
15710337--15710389	26	2.0	26	100	0	106	26	20	26	26	1.99
15712080--15712132	26	2.0	26	100	0	106	26	20	26	26	1.99
15714575--15714627	26	2.0	26	96	0	97	26	15	28	30	1.96
15713784--15718964	882	5.9	885	83	5	6410	25	24	24	26	2.00
15717165--15717214	26	1.9	26	95	0	91	30	20	26	24	1.98
15720502--15720553	26	2.0	26	92	3	88	28	21	23	26	1.99
15721399--15721448	26	1.9	26	91	0	82	26	22	26	26	2.00
15719645--15729411	888	11.1	888	86	3	12714	25	23	24	26	2.00
15723172--15723224	26	2.0	26	96	0	97	26	18	26	28	1.98
15724064--15724117	26	2.0	26	86	10	74	24	18	25	31	1.97
15725819--15725869	26	2.0	26	92	0	84	27	19	25	27	1.99
15726705--15726757	26	2.0	26	96	0	97	26	15	28	30	1.96
15727592--15727644	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15729329--15729379	26	2.0	26	92	0	84	27	19	25	27	1.99
15730057--15730109	26	2.0	26	92	0	88	26	16	26	30	1.97
15728632--15730172	721	2.1	716	86	4	2121	26	21	24	26	1.99
15730945--15731002	26	2.2	27	90	3	91	24	18	27	29	1.98
15729353--15731860	888	2.8	886	89	1	3755	25	23	24	26	2.00
15731813--15732207	159	2.5	159	84	3	483	22	29	28	19	1.98
15732856--15733226	185	2.0	185	81	2	431	22	26	27	22	1.99
15733909--15733961	26	2.0	26	88	0	79	24	18	24	32	1.97
15734956--15735008	26	2.0	26	92	0	88	26	15	28	30	1.96
15734805--15735159	185	1.9	185	83	2	462	21	28	29	20	1.98
15735845--15735897	26	2.0	26	92	0	88	24	18	26	30	1.98
15737773--15737825	26	2.0	26	96	0	97	24	20	26	28	1.99
15738652--15738702	26	2.0	26	96	0	93	27	13	29	29	1.94
15739375--15739425	26	2.0	26	100	0	102	27	15	29	27	1.96
15737959--15740129	723	3.0	720	90	1	3292	26	22	24	27	1.99
15740959--15741008	26	1.9	26	95	0	91	26	20	30	24	1.98
15739403--15741517	881	2.4	857	86	4	2889	25	23	24	26	2.00
15741663--15741715	26	2.0	26	92	0	88	24	20	26	28	1.99
15740963--15743092	704	3.0	706	82	4	2416	25	22	25	26	2.00
15743251--15743302	25	2.0	26	92	3	88	26	19	25	28	1.98
15743266--15744176	455	2.0	454	85	2	1231	25	23	24	26	2.00
15744589--15744641	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15745447--15745530	26	3.2	26	93	0	141	26	15	26	32	1.96
15745893--15745951	26	2.2	28	78	6	68	27	6	6	59	1.48
15746362--15746414	26	2.0	26	96	0	97	28	20	26	24	1.99
15747255--15747306	25	2.0	26	96	3	97	26	19	26	26	1.99
15743720--15752525	893	10.0	889	85	4	11091	25	23	24	26	2.00
15748146--15748198	26	2.0	26	88	0	79	30	15	26	28	1.96
15749000--15749051	25	2.0	26	88	3	79	25	19	25	30	1.98
15749875--15749927	26	2.0	26	96	0	97	26	20	24	28	1.99
15751615--15751667	26	2.0	26	100	0	106	26	20	26	26	1.99
15753505--15753567	16	3.9	16	77	8	65	19	4	31	44	1.71
15753510--15753578	33	2.1	33	83	5	86	17	2	30	49	1.61
15754193--15754243	26	1.9	26	84	4	66	19	9	27	43	1.82
15754851--15754930	12	6.7	12	70	5	63	16	5	46	32	1.68
15754851--15754936	24	3.5	24	88	1	127	16	5	45	32	1.71
15754977--15755023	4	11.8	4	77	8	51	0	2	17	80	0.80
15754976--15755024	12	4.1	12	82	17	66	0	2	16	81	0.78
15755199--15755683	49	9.9	49	83	6	597	36	25	11	26	1.90
15761088--15761150	16	3.9	16	77	8	65	19	4	31	44	1.71
15761093--15761161	33	2.1	33	86	5	95	15	2	31	49	1.60
15762507--15762560	24	2.2	24	87	6	74	16	5	44	33	1.71
15762613--15762645	14	2.3	15	89	5	50	0	0	15	84	0.61
15762612--15762645	15	2.3	15	90	10	52	0	0	14	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15762609--15762643	18	1.9	18	100	0	70	0	0	14	85	0.59
15763586--15763638	26	2.0	26	96	0	97	26	18	26	28	1.98
15762716--15778831	890	18.1	889	79	7	15322	25	23	24	25	2.00
15764476--15764528	26	2.0	26	96	0	97	26	18	26	28	1.98
15765358--15765433	26	2.9	26	98	0	143	35	18	22	23	1.96
15767316--15767368	26	2.0	26	100	0	106	26	16	26	30	1.97
15769048--15769099	26	2.0	26	96	0	95	26	21	25	26	1.99
15769936--15769988	26	2.0	26	100	0	106	26	20	26	26	1.99
15770169--15770194	4	6.5	4	100	0	52	0	26	73	0	0.84
15770810--15770862	26	2.0	26	89	7	81	32	20	22	24	1.98
15767342--15778773	888	13.0	862	83	6	12552	25	23	24	25	2.00
15773290--15773340	26	2.0	26	92	0	84	31	15	25	27	1.96
15773316--15773682	158	2.3	158	81	0	419	24	28	26	20	1.99
15776080--15776132	26	2.0	26	96	0	97	28	20	24	26	1.99
15776974--15777026	26	2.0	26	92	0	88	26	16	26	30	1.97
15772566--15778831	863	7.1	888	84	3	7542	25	23	24	25	2.00
15777862--15777913	26	2.0	26	92	0	86	26	19	25	28	1.98
15778755--15778807	26	2.0	26	85	0	70	30	15	26	28	1.96
15780374--15780426	26	2.0	26	96	0	97	28	20	24	26	1.99
15778788--15781383	888	2.9	884	87	2	3702	25	23	24	26	2.00
15781259--15781310	26	2.0	26	96	0	95	28	19	26	25	1.98
15782761--15782811	26	2.0	26	96	0	93	27	13	27	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15783653--15783705	26	2.0	26	92	0	88	24	20	26	28	1.99
15784543--15784592	26	1.9	26	95	0	91	30	18	26	26	1.98
15781496--15804842	890	26.5	886	80	7	21312	25	24	24	25	2.00
15787029--15787081	26	2.0	26	89	7	81	30	22	20	26	1.98
15787006--15787428	185	2.3	184	82	4	512	22	27	26	22	1.99
15788102--15788153	26	2.0	26	96	0	95	28	19	25	26	1.98
15787212--15804842	890	20.0	887	85	4	22197	25	24	24	25	2.00
15789877--15789930	26	2.1	26	86	6	74	31	22	18	27	1.97
15790767--15790819	26	2.0	26	96	0	97	26	22	26	24	2.00
15793397--15793447	26	2.0	26	92	0	84	29	17	25	27	1.98
15795149--15795201	26	2.0	26	96	0	97	24	20	28	26	1.99
15796906--15796956	26	2.0	26	96	0	93	33	17	21	27	1.96
15800437--15800489	26	2.0	26	96	0	97	28	20	24	26	1.99
15802190--15802242	26	2.0	26	88	0	79	30	18	24	26	1.98
15803933--15803985	26	2.0	26	96	0	97	26	18	26	28	1.98
15805522--15805574	26	2.0	26	88	0	79	26	20	24	28	1.99
15806411--15806463	26	2.0	26	92	0	88	26	16	26	30	1.97
15804789--15808493	874	4.2	879	86	3	4961	25	24	24	25	2.00
15808171--15808226	26	2.2	26	90	0	85	26	16	25	32	1.96
15808919--15808971	26	2.0	26	88	0	79	30	15	26	28	1.96
15809812--15809864	26	2.0	26	88	0	79	26	16	24	32	1.97
15811606--15811658	26	2.0	26	96	0	97	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15812491--15812543	26	2.0	26	96	0	97	28	20	24	26	1.99
15808495--15817416	886	10.1	889	86	3	11900	25	24	24	26	2.00
15813377--15813428	25	2.0	26	96	3	97	25	21	26	26	1.99
15814265--15814318	26	2.1	26	92	0	90	25	18	24	31	1.97
15815121--15815173	26	2.0	26	96	0	97	28	16	24	30	1.97
15816869--15816921	26	2.0	26	82	7	63	28	18	22	30	1.98
15817288--15817346	26	2.2	26	84	3	73	25	8	6	59	1.51
15817155--15817684	268	2.0	268	91	0	853	24	16	19	38	1.92
15818027--15818076	26	1.9	26	100	0	100	28	22	26	24	1.99
15819775--15819827	26	2.0	26	85	7	72	28	20	22	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160