genome.fa.s334.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  17  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4914869--4914908	21	1.9	21	85	10	55	35	2	2	60	1.24
4926067--4926376	158	2.0	157	85	6	423	38	17	13	31	1.88
4926369--4926536	61	2.7	60	76	13	153	42	11	11	34	1.78
4926785--4926999	61	3.5	60	75	11	195	31	13	16	39	1.87
4926789--4927013	121	1.9	121	83	3	292	31	14	14	40	1.86
4927119--4927301	91	2.0	92	81	5	219	41	10	12	35	1.77
4927240--4927371	57	2.2	60	84	5	171	43	12	16	27	1.83
4928544--4928618	34	2.2	34	85	0	96	36	14	10	38	1.81
4928553--4928629	34	2.3	34	81	0	91	31	16	11	40	1.85
4932408--4932443	3	12.0	3	93	0	63	63	0	2	33	1.08
4943297--4943336	13	2.9	13	85	7	53	67	2	2	27	1.16
4945039--4945077	20	2.0	20	84	0	51	51	25	2	20	1.60
4946205--4946241	19	1.9	19	89	10	58	54	2	0	43	1.14
4947676--4947708	16	2.0	17	88	5	50	69	0	3	27	1.03
4950674--4950709	17	2.1	17	100	0	72	27	5	16	50	1.68
4960216--4960268	2	26.5	2	96	0	97	0	0	47	52	1.00
4963476--4963540	27	2.6	24	73	17	69	61	0	6	32	1.21
4965007--4965069	18	3.0	22	75	22	71	49	11	7	31	1.67
4965025--4965067	19	2.3	18	84	4	50	48	11	9	30	1.71
4965095--4965149	18	3.0	19	77	17	62	50	9	5	34	1.57
4965281--4965326	6	7.8	6	83	11	60	84	0	4	10	0.75
4965273--4965326	12	4.8	11	80	8	56	85	1	3	9	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4965668--4965692	13	1.9	13	100	0	50	52	8	0	40	1.31
4966628--4966691	33	1.9	33	81	6	76	35	15	14	34	1.88
4966856--4966895	19	2.0	20	90	4	64	30	10	12	47	1.74
4966898--4966942	17	2.6	17	89	0	63	31	17	22	28	1.97
4966921--4966977	27	2.2	26	87	3	78	40	10	22	26	1.86
4967334--4967407	23	3.3	23	67	24	66	45	12	9	32	1.73
4967325--4967439	45	2.6	47	80	8	141	43	15	8	32	1.77
4967377--4967471	22	4.3	22	76	11	79	47	11	6	34	1.65
4967325--4967439	46	2.6	45	79	8	135	43	15	8	32	1.77
4972483--4972517	17	2.1	16	89	5	52	68	0	5	25	1.11
4972487--4972525	17	2.3	17	86	0	51	71	2	2	23	1.10
4973298--4973330	14	2.4	14	94	0	57	51	15	6	27	1.66
4973319--4973381	22	3.0	22	75	22	71	50	9	6	33	1.60
4973335--4973379	19	2.4	18	85	3	54	51	8	6	33	1.59
4973535--4973563	3	9.7	3	100	0	58	68	31	0	0	0.89
4973562--4973617	3	18.7	3	100	0	112	67	0	0	32	0.91
4973625--4973670	14	3.3	14	81	9	58	78	6	4	10	1.08
4973624--4973662	20	1.9	21	89	5	62	79	7	2	10	1.02
4973565--4973661	6	15.3	6	84	10	59	72	5	1	21	1.11
4977037--4977094	28	2.0	29	83	9	75	72	10	0	17	1.11
4977824--4977848	8	3.1	8	100	0	50	12	0	0	88	0.53
4978022--4978230	43	4.8	43	78	6	197	44	19	14	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4978022--4978385	40	8.7	43	74	11	233	45	18	13	22	1.83
4990315--4990339	8	3.1	8	100	0	50	12	0	0	88	0.53
4990415--4990487	26	2.9	24	77	8	74	43	10	0	45	1.39
4990433--4990481	25	2.0	26	92	8	84	42	8	0	48	1.32
4994055--4994108	26	2.1	26	82	6	65	72	11	0	16	1.12
4994978--4995032	3	18.7	3	92	3	85	70	1	0	27	0.97
4995208--4995501	39	7.5	39	78	1	201	42	17	12	27	1.85
4995209--4995453	118	2.1	117	83	3	305	41	17	12	28	1.85
4995287--4995570	78	3.7	75	76	10	249	40	16	14	28	1.88
4995242--4995492	117	2.1	118	78	3	274	43	17	11	27	1.84
4995654--4995732	39	2.1	38	85	2	104	43	17	15	24	1.87
4995710--4995757	25	1.9	25	86	0	69	41	20	16	20	1.90
5004174--5004202	8	3.6	8	100	0	58	37	13	24	24	1.91
5008240--5008298	15	3.9	14	77	18	64	74	8	0	16	1.05
5009089--5009114	3	8.7	3	100	0	52	69	0	0	30	0.89
5013068--5013107	17	2.2	19	86	8	57	50	0	2	47	1.14
5013114--5013166	23	2.3	23	83	0	70	49	1	9	39	1.46
5013085--5013189	53	2.0	53	81	3	122	53	1	5	39	1.36
5017674--5017717	10	4.4	10	97	0	79	63	0	0	36	0.95
5017675--5017745	10	6.8	10	83	12	63	63	2	1	32	1.18
5024094--5024230	31	4.5	31	79	9	131	48	32	1	17	1.56
5024103--5024230	16	8.4	16	79	12	119	49	33	0	16	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5024094--5024230	45	3.0	45	83	4	141	48	32	1	17	1.56
5026053--5026091	20	2.0	20	85	5	53	58	7	7	25	1.52
5032107--5032532	33	13.1	33	78	7	433	30	19	14	34	1.92
5032107--5032532	65	6.5	65	81	6	445	30	19	14	34	1.92
5032107--5032521	98	4.3	97	82	6	448	30	20	14	34	1.92
5033128--5033289	87	1.9	87	92	0	270	21	22	17	38	1.93
5033262--5033314	24	2.3	23	77	6	61	22	18	22	35	1.95
5033622--5033666	21	2.1	21	92	8	74	60	2	0	37	1.09
5034943--5034975	16	1.9	18	88	11	52	45	12	0	42	1.41
5035132--5035238	16	6.9	16	80	13	93	49	31	0	18	1.48
5035136--5035270	15	9.0	15	76	12	77	50	31	0	17	1.47
5035180--5035259	14	5.5	14	83	5	97	48	33	0	17	1.47
5035132--5035269	45	3.1	44	81	6	152	48	34	0	17	1.47
5037917--5037941	8	3.1	8	100	0	50	12	0	0	88	0.53
5038892--5038943	20	2.5	20	79	20	61	46	19	3	30	1.68
5040898--5040943	23	2.1	23	84	8	60	39	0	2	58	1.10
5045004--5045045	19	2.2	19	91	8	68	64	4	0	30	1.14
5045110--5045157	12	3.8	12	84	15	62	45	0	2	52	1.12
5045074--5045154	12	7.0	11	71	16	58	48	0	1	50	1.08
5047850--5047948	49	2.0	50	84	5	130	49	7	11	32	1.65
5050546--5050584	8	4.9	8	80	0	51	10	2	5	82	0.93
5050645--5050701	27	2.3	26	85	14	84	10	8	0	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5050861--5050898	19	2.0	19	94	0	67	47	13	5	34	1.65
5051084--5051121	16	2.5	15	91	4	58	21	0	2	76	0.91
5051334--5051494	61	2.7	58	74	7	151	42	16	3	37	1.64
5051710--5051761	25	2.1	25	96	0	95	42	7	1	48	1.43
5051879--5051934	26	2.2	26	86	0	76	37	23	0	39	1.55
5052056--5052107	25	2.1	25	85	3	70	40	17	0	42	1.49
5051877--5052103	61	3.7	62	79	3	219	42	21	0	34	1.59
5054052--5054105	3	17.7	3	96	3	99	31	0	1	66	1.02
5054429--5054455	14	1.9	14	100	0	54	48	0	7	44	1.31
5056486--5056724	33	7.2	33	78	5	205	21	28	20	29	1.98
5056491--5056682	99	1.9	99	84	6	255	21	27	21	29	1.98
5062424--5062469	22	2.1	22	84	11	60	60	0	0	39	0.97
5066684--5066718	16	2.2	16	90	10	54	40	11	0	48	1.39
5067148--5067177	2	15.0	2	92	0	51	46	3	0	50	1.18
5067873--5067909	12	3.0	13	84	7	51	37	0	0	62	0.96
5072515--5072562	12	4.1	11	79	12	51	58	2	4	35	1.29
5072513--5072562	24	2.1	24	96	0	91	58	2	4	36	1.29
5072882--5072950	28	2.5	28	80	4	86	65	4	1	28	1.21
5078834--5078858	2	12.5	2	100	0	50	52	0	0	48	1.00
5082864--5082897	15	2.2	16	89	5	52	32	0	8	58	1.29
5082943--5082986	17	2.6	17	74	0	52	34	0	0	65	0.93
5090942--5090973	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5100348--5100433	41	2.1	42	93	6	149	27	25	11	34	1.91
5101954--5102026	31	2.4	31	84	6	87	41	1	0	57	1.07
5102188--5102268	31	2.6	31	84	3	101	39	7	7	45	1.60
5102317--5102383	33	2.1	31	83	5	80	46	11	2	38	1.56
5111346--5111388	5	8.8	5	85	14	63	81	0	0	18	0.69
5111346--5111391	21	2.3	19	92	7	74	80	0	0	19	0.71
5111407--5111455	3	16.3	3	91	0	80	63	0	4	32	1.13
5111990--5112026	11	3.4	11	92	0	56	59	10	0	29	1.31
5112325--5112436	21	5.4	20	78	7	107	65	1	4	28	1.22
5112325--5112453	41	3.0	41	82	8	134	64	2	3	29	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160