genome.fa.s334.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  83  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16090707--16101620	861	12.5	862	82	7	12153	25	23	24	26	2.00
16092859--16092911	26	2.1	26	82	6	74	32	18	22	26	1.97
16093291--16093366	35	2.2	35	90	4	118	22	9	17	51	1.73
16096355--16096406	26	2.0	26	85	10	72	26	13	28	30	1.94
16097221--16097270	26	1.9	26	91	0	82	32	16	24	28	1.96
16100705--16100757	26	2.0	26	92	0	88	24	18	28	28	1.98
16098099--16101620	889	4.0	887	86	3	4891	25	23	24	26	2.00
16102602--16102632	16	1.9	16	93	0	53	22	9	25	41	1.84
16103165--16103252	38	2.3	38	84	0	113	10	23	39	26	1.86
16103830--16103874	17	2.6	17	92	3	72	0	2	15	82	0.77
16104040--16104119	12	6.7	12	74	5	63	15	3	47	33	1.63
16104040--16104125	24	3.5	24	87	1	118	15	4	46	33	1.66
16104165--16104214	8	5.9	8	81	11	55	2	0	14	84	0.72
16104159--16104211	19	2.7	19	80	11	54	1	1	13	83	0.82
16104386--16104865	48	9.9	48	86	6	605	35	25	11	26	1.90
16104386--16104864	97	4.9	98	86	6	638	35	25	11	26	1.90
16105997--16106049	16	3.2	16	75	15	54	18	3	26	50	1.64
16107179--16107223	17	2.6	17	89	3	63	4	2	11	82	0.91
16107387--16107462	12	6.3	12	72	6	64	15	3	46	34	1.65
16107387--16107472	24	3.5	24	88	1	118	16	4	46	32	1.67
16107512--16107561	8	5.9	8	84	11	64	0	0	16	84	0.63
16107513--16107558	12	3.7	12	83	11	65	0	0	15	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16107732--16108102	48	7.9	49	90	7	585	34	28	10	26	1.89
16107732--16108097	94	3.9	95	90	8	590	34	28	10	26	1.90
16120172--16120202	16	1.9	16	93	0	53	22	9	25	41	1.84
16120514--16120561	25	1.9	25	83	8	62	27	2	0	70	0.98
16121393--16121446	23	2.5	21	80	13	65	1	1	12	83	0.81
16121401--16121445	17	2.6	17	92	3	72	0	2	15	82	0.77
16121610--16121671	24	2.5	24	80	12	72	17	4	43	33	1.71
16121716--16121758	16	2.7	15	82	7	50	4	0	11	83	0.78
16121716--16121769	28	1.9	28	81	7	65	11	0	11	77	0.99
16122697--16122749	26	2.0	26	96	0	97	26	18	26	28	1.98
16121824--16125217	889	3.8	887	88	2	4897	25	23	24	26	2.00
16123586--16123638	26	2.0	26	92	0	88	30	20	22	26	1.98
16124474--16124526	26	2.0	26	100	0	106	26	20	26	26	1.99
16125092--16125353	136	1.9	134	91	1	425	28	24	26	21	1.99
16125493--16125542	26	1.9	26	100	0	100	34	16	22	28	1.95
16126383--16126435	26	2.0	26	96	0	97	26	20	24	28	1.99
16125242--16127262	890	2.3	887	88	2	3057	25	24	25	24	2.00
16128088--16128140	26	2.0	26	96	0	97	26	18	26	28	1.98
16128976--16129028	26	2.0	26	92	0	88	28	18	24	28	1.98
16129865--16129917	26	2.0	26	85	0	70	26	20	26	26	1.99
16127417--16130741	888	3.7	887	89	1	4826	25	24	24	25	2.00
16132436--16132488	26	2.0	26	88	0	79	28	11	26	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16133324--16133376	26	2.0	26	85	0	70	30	22	20	26	1.98
16131008--16135991	889	5.6	888	89	2	7089	25	23	24	26	2.00
16134213--16134265	26	2.0	26	96	0	97	28	20	24	26	1.99
16135102--16135154	26	2.0	26	96	0	97	28	20	24	26	1.99
16135682--16136301	309	2.0	310	87	3	910	26	28	22	22	1.99
16136296--16136348	26	2.0	26	92	0	88	28	16	26	28	1.97
16137185--16137237	26	2.0	26	82	7	63	28	16	22	32	1.96
16137818--16137870	26	2.0	26	92	0	88	28	18	24	28	1.98
16139592--16139644	26	2.0	26	88	0	79	32	16	20	30	1.95
16137503--16149199	889	13.3	883	84	5	13437	25	24	24	25	2.00
16140485--16140537	26	2.0	26	92	0	88	28	18	24	28	1.98
16141376--16141428	26	2.0	26	92	0	88	28	18	24	28	1.98
16143121--16143173	26	2.0	26	96	0	97	26	18	26	28	1.98
16144126--16144178	26	2.0	26	100	0	106	11	37	22	28	1.89
16144896--16144946	26	2.0	26	92	0	84	27	17	23	31	1.97
16137838--16149270	863	13.1	864	83	6	12867	25	24	24	25	2.00
16150743--16150794	26	2.0	26	92	0	86	25	19	26	28	1.98
16150769--16151136	159	2.3	159	86	2	490	23	28	27	20	1.99
16151786--16151838	26	2.0	26	96	0	97	28	20	24	26	1.99
16154124--16154176	26	2.0	26	92	0	88	28	18	24	28	1.98
16154477--16156567	888	2.4	887	90	1	3199	25	23	24	26	2.00
16157502--16157553	25	2.0	26	92	3	88	25	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16156560--16177570	887	23.6	888	81	6	21104	25	24	24	25	2.00
16161049--16161100	25	2.0	26	88	3	79	25	17	26	30	1.97
16162821--16162873	26	2.0	26	92	0	88	30	20	22	26	1.98
16163896--16163948	26	2.0	26	96	0	97	26	18	26	28	1.98
16163690--16164110	185	2.3	184	81	6	469	24	26	27	22	2.00
16170079--16170133	26	2.1	26	93	0	92	30	18	21	29	1.97
16171857--16171909	26	2.0	26	92	0	88	28	22	22	26	1.99
16164786--16196690	889	36.0	889	76	7	21912	24	23	23	24	1.98
16172746--16172798	26	2.0	26	88	0	79	28	22	20	28	1.99
16177135--16177187	26	2.0	26	96	0	97	28	20	26	24	1.99
16177790--16177842	26	2.0	26	96	0	97	28	20	24	26	1.99
16178671--16178721	26	2.0	26	88	0	75	29	17	23	29	1.97
16177579--16179523	875	2.2	879	86	3	2718	25	24	24	24	2.00
16180581--16180633	26	2.0	26	92	7	90	30	18	24	26	1.98
16181472--16181524	26	2.0	26	96	0	97	26	18	26	28	1.98
16183254--16183306	26	2.0	26	92	0	88	26	16	26	30	1.97
16185012--16185063	26	2.0	25	88	3	77	28	19	23	28	1.98
16180524--16196690	885	18.1	888	83	5	18772	25	24	24	25	2.00
16185916--16185965	26	1.9	26	91	0	82	30	18	26	26	1.98
16187662--16187714	26	2.0	26	81	0	61	28	18	24	28	1.98
16188550--16188602	26	2.0	26	89	7	81	24	22	26	26	2.00
16190322--16190370	26	1.9	25	87	4	71	36	14	20	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16192080--16192132	26	2.0	26	100	0	106	26	20	26	26	1.99
16193838--16193916	26	3.0	26	87	7	108	29	16	25	29	1.97
16193890--16194234	159	2.2	159	85	0	447	21	28	28	20	1.98
16194888--16194940	26	2.0	26	92	0	88	24	18	28	28	1.98
16195774--16195826	26	2.0	26	88	0	79	30	16	20	32	1.95
16194481--16196690	890	2.5	885	88	2	3198	25	25	24	24	2.00
16195936--16198090	698	3.1	699	89	1	3240	26	24	23	25	2.00
16199818--16199870	26	2.0	26	92	0	88	26	22	24	26	2.00
16201571--16201623	26	2.0	26	88	0	79	26	20	24	28	1.99
16203323--16203375	26	2.0	26	88	0	79	24	22	26	26	2.00
16204446--16204498	26	2.0	26	100	0	106	26	20	26	26	1.99
16204463--16207728	859	3.8	847	84	6	4045	25	23	24	27	2.00
16208586--16208646	26	2.4	26	94	5	108	26	22	24	26	2.00
16209475--16209535	26	2.4	26	94	5	108	26	22	24	26	2.00
16207884--16214791	882	7.8	882	84	5	8691	25	23	24	26	2.00
16210365--16210417	26	2.0	26	92	0	88	28	18	24	28	1.98
16212120--16212197	26	3.0	26	92	0	129	25	16	28	29	1.97
16213027--16213087	26	2.4	26	83	5	81	26	21	24	27	1.99
16213874--16213926	26	2.0	26	92	0	88	28	18	24	28	1.98
16215459--16215509	26	2.0	26	96	0	93	29	21	19	29	1.98
16216373--16216425	26	2.0	26	96	0	97	26	22	26	24	2.00
16214762--16218153	905	3.8	881	84	6	4075	24	23	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16219693--16219744	26	2.0	26	92	0	86	26	15	26	30	1.96
16220607--16220659	26	2.0	26	89	7	81	32	20	22	24	1.98
16221495--16221547	26	2.0	26	96	0	97	28	18	26	26	1.98
16218830--16225051	888	7.0	887	85	4	8035	25	24	24	25	2.00
16222366--16222416	26	2.0	26	88	0	75	27	17	25	29	1.98
16223244--16223303	26	2.4	25	86	5	77	26	21	25	26	2.00
16222266--16226044	887	4.3	878	81	9	3924	25	25	24	25	2.00
16224143--16224193	26	1.9	27	92	4	86	31	17	27	23	1.97
16225841--16225895	26	2.1	27	89	3	85	32	18	25	23	1.97
16226428--16226478	26	2.0	26	92	0	84	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160