genome.fa.s334.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  29  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7418017--7418571	254	2.2	252	82	5	629	30	10	14	45	1.78
7418094--7418580	256	1.9	254	80	6	567	31	10	13	44	1.78
7419691--7419734	19	2.3	19	84	7	54	68	2	6	22	1.25
7419704--7419738	18	1.9	18	88	11	54	68	0	8	22	1.16
7419734--7420061	127	2.7	124	82	7	363	48	7	9	35	1.63
7419728--7420082	117	2.9	116	78	12	340	49	7	8	34	1.60
7420664--7420693	15	2.0	15	100	0	60	66	6	0	26	1.16
7420668--7420714	23	2.0	23	83	0	58	70	2	2	25	1.10
7435970--7436024	27	2.0	26	86	6	74	5	21	0	72	1.04
7436021--7436098	1	78.0	1	76	0	66	7	2	2	87	0.73
7435994--7436098	9	11.3	9	74	15	54	7	7	1	82	0.90
7435994--7436055	30	2.1	28	85	5	79	6	11	0	82	0.84
7435972--7436097	22	5.9	20	76	12	90	7	10	1	80	0.95
7435970--7436097	14	9.1	14	74	13	75	7	10	1	80	0.96
7436021--7436097	20	3.7	20	81	10	82	7	2	2	87	0.74
7436022--7436098	21	3.8	19	75	17	75	7	2	2	87	0.74
7440193--7440329	54	2.6	54	84	5	172	29	14	8	47	1.73
7440638--7440692	24	2.2	25	87	6	76	41	9	3	45	1.53
7441621--7441650	9	3.4	9	90	9	53	23	0	0	76	0.78
7444108--7444137	2	15.0	2	100	0	60	50	0	0	50	1.00
7444511--7444545	17	2.1	17	88	0	52	28	0	0	71	0.86
7444728--7444787	28	2.1	28	81	9	68	58	1	3	36	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7447307--7447369	31	2.1	30	82	8	74	50	7	0	41	1.31
7447325--7447369	14	3.0	15	80	9	56	51	11	0	37	1.38
7447493--7447536	3	14.7	3	95	0	79	31	0	2	65	1.05
7451504--7451536	17	1.9	17	93	0	57	36	15	0	48	1.45
7461543--7461714	85	2.0	87	87	3	249	58	6	10	24	1.54
7463444--7463529	23	3.6	22	74	21	84	52	4	4	38	1.43
7463516--7463565	15	3.4	15	76	13	50	64	10	0	26	1.25
7471989--7472060	34	2.1	34	82	5	83	47	1	2	48	1.25
7472966--7473005	20	2.0	20	90	0	62	45	0	0	55	0.99
7473330--7473379	19	2.7	20	85	14	63	42	6	2	50	1.38
7473397--7473444	16	2.9	16	78	6	51	37	4	2	56	1.30
7474108--7474158	23	2.3	22	83	10	59	23	1	3	70	1.14
7475622--7475655	14	2.5	13	90	4	50	0	0	17	82	0.67
7475622--7475656	13	2.6	14	90	4	54	0	0	17	82	0.66
7476638--7476686	18	2.9	17	84	6	64	22	4	0	73	1.00
7476634--7476687	7	8.4	7	76	17	55	22	3	0	74	0.98
7476634--7476683	24	2.1	23	88	7	73	22	4	0	74	0.99
7481139--7481337	63	3.2	60	77	11	195	39	11	12	37	1.78
7483579--7483620	15	2.7	16	85	7	59	69	0	0	30	0.89
7483594--7483647	25	2.2	25	86	0	72	59	1	1	37	1.19
7483750--7483820	30	2.4	29	90	2	106	64	0	1	33	1.02
7483753--7483841	29	3.0	29	86	4	108	60	0	2	37	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7500275--7500321	23	2.0	23	88	8	69	34	0	19	46	1.50
7504058--7504113	27	2.1	27	93	0	94	30	21	19	28	1.98
7511389--7511440	15	3.0	18	83	13	65	65	3	0	30	1.10
7511452--7511485	11	3.2	10	88	12	50	76	2	0	20	0.92
7511475--7511537	24	2.5	24	84	5	72	63	3	1	31	1.19
7511473--7511537	25	2.6	25	80	4	69	64	3	1	30	1.18
7511622--7511811	34	5.4	36	73	17	125	60	4	2	32	1.30
7511631--7511827	107	1.8	105	84	7	263	60	4	2	31	1.30
7511745--7511861	18	6.6	17	70	10	67	63	5	1	29	1.28
7511745--7511861	17	6.6	18	70	13	73	63	5	1	29	1.28
7511669--7511862	106	1.8	109	83	9	265	60	5	2	31	1.31
7511780--7511878	18	5.6	17	73	12	58	61	4	2	32	1.26
7511729--7511878	36	4.3	33	70	14	90	64	5	1	29	1.24
7511794--7511878	8	9.8	8	72	16	53	62	3	2	31	1.25
7511796--7511878	18	4.7	17	76	11	69	63	3	2	30	1.24
7511933--7511979	20	2.4	19	82	6	58	34	2	8	55	1.42
7513788--7513956	52	3.2	53	69	15	143	50	11	5	32	1.62
7513757--7513957	104	1.9	105	91	1	332	50	10	5	33	1.61
7513791--7513956	53	3.2	52	68	19	137	50	10	6	33	1.62
7514143--7514182	21	1.9	21	85	10	55	15	2	7	75	1.14
7514327--7514364	14	2.7	14	84	11	51	21	0	2	76	0.91
7514339--7514372	17	1.9	18	88	5	52	29	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7516672--7516722	22	2.3	22	80	6	59	23	11	7	56	1.61
7519867--7519897	16	1.9	16	93	0	53	35	29	0	35	1.58
7522867--7522905	8	4.9	8	83	0	51	61	2	2	33	1.23
7523054--7523084	15	2.0	16	93	6	55	45	0	9	45	1.36
7524314--7524400	34	2.6	33	83	5	111	44	5	5	43	1.51
7541225--7541250	2	13.0	2	100	0	52	0	50	0	50	1.00
7541922--7541975	27	2.0	27	100	0	108	14	25	7	51	1.68
7543998--7544040	2	22.0	2	95	4	79	51	0	0	48	1.00
7544597--7544651	23	2.3	22	76	14	56	30	3	7	58	1.43
7544824--7544882	30	2.0	30	83	6	75	40	1	0	57	1.09
7544869--7544900	11	2.9	11	100	0	64	62	0	0	37	0.95
7544945--7545038	46	2.0	46	89	0	143	32	19	9	38	1.84
7545351--7545401	26	2.0	26	84	7	68	49	9	3	37	1.55
7545510--7545540	10	3.0	10	95	4	53	58	0	0	41	0.98
7546966--7546999	13	2.6	13	95	0	59	41	2	2	52	1.31
7556008--7556055	21	2.3	21	78	7	53	31	0	12	56	1.37
7556954--7556996	14	3.0	14	83	12	52	23	2	0	74	0.93
7562934--7563646	235	3.0	235	92	1	1167	45	13	15	25	1.83
7568265--7568363	49	2.1	46	81	12	112	55	8	17	19	1.66
7569406--7569621	114	1.9	114	82	5	276	27	26	12	33	1.92
7570243--7570315	25	3.2	22	78	17	71	42	1	6	49	1.38
7570365--7570415	3	17.0	3	100	0	102	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7571266--7571319	14	3.5	15	77	22	51	14	7	1	75	1.09
7571526--7571563	15	2.4	16	95	4	69	84	0	2	13	0.73
7572497--7572531	2	17.5	2	87	0	52	48	0	2	48	1.16
7572482--7572527	16	2.9	16	86	0	56	47	2	4	45	1.34
7575439--7575481	24	1.9	23	86	13	63	39	0	0	60	0.97
7575659--7575711	24	2.2	24	89	0	79	58	3	5	32	1.39
7577082--7577114	14	2.3	15	89	5	50	36	0	3	60	1.12
7578551--7578727	88	2.0	88	92	2	293	23	18	15	43	1.87
7587980--7588011	2	16.0	2	100	0	64	50	0	0	50	1.00
7588472--7588519	2	24.0	2	100	0	96	0	50	0	50	1.00
7589191--7589244	27	2.0	27	96	0	99	14	25	5	53	1.63
7590699--7590741	21	2.0	21	81	0	50	76	11	4	6	1.13
7591409--7591651	121	2.0	119	95	4	434	46	8	7	37	1.63
7592322--7592410	46	1.9	46	86	0	124	32	20	7	39	1.81
7592603--7592650	21	2.2	22	82	10	55	37	0	0	62	0.95
7592726--7592788	30	2.1	30	85	5	83	49	6	3	41	1.44
7592771--7592815	23	2.0	23	81	0	54	68	0	0	31	0.89
7592787--7592837	20	2.5	21	81	6	61	70	1	0	27	0.98
7594320--7594353	13	2.6	13	95	0	59	41	2	2	52	1.31
7603297--7603331	12	3.0	11	88	12	52	37	0	11	51	1.38
7603378--7603443	3	22.0	3	100	0	132	33	0	0	66	0.92
7604287--7604329	14	3.0	14	83	12	52	23	2	0	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7604504--7604538	15	2.3	15	90	5	52	82	2	2	11	0.88
7605229--7605278	24	2.1	24	88	0	73	16	22	8	54	1.68
7614885--7615010	48	2.6	48	80	8	134	53	8	19	18	1.69
7614921--7615024	48	2.1	49	83	1	129	50	7	20	21	1.72
7615689--7615744	27	2.1	27	89	0	85	25	32	10	32	1.90
7615753--7616193	114	3.9	113	77	4	404	27	28	11	32	1.91
7616796--7616868	25	3.2	22	77	17	62	41	1	8	49	1.41
7616834--7616868	12	3.0	11	88	12	52	37	0	8	54	1.31
7616914--7616961	3	16.0	3	100	0	96	33	33	0	33	1.58
7616960--7617016	3	19.0	3	100	0	114	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160