genome.fa.s334.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  96  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18178046--18178286	36	6.8	36	66	14	124	26	15	17	39	1.90
18178219--18178285	34	1.9	36	81	6	84	25	17	19	37	1.94
18178476--18178616	70	2.0	69	80	4	158	30	12	17	39	1.87
18177823--18178612	411	1.9	412	85	3	1108	29	13	16	40	1.87
18180616--18180656	19	2.2	19	86	0	55	7	4	2	85	0.81
18183447--18183545	23	4.4	22	78	11	112	45	13	14	27	1.81
18186331--18186383	28	2.0	26	82	10	63	45	0	5	49	1.26
18186942--18186985	2	22.0	2	100	0	88	50	0	0	50	1.00
18187324--18187362	18	2.2	18	86	9	53	2	30	12	53	1.52
18189445--18189521	26	2.8	28	82	7	95	41	5	6	46	1.52
18189801--18189858	21	2.7	22	81	7	75	22	1	15	60	1.44
18189772--18189876	41	2.6	40	79	13	108	20	4	15	60	1.53
18189741--18189887	20	7.2	20	71	14	88	22	5	13	58	1.56
18191581--18191627	24	1.9	25	82	4	60	68	0	2	29	1.02
18192290--18192329	20	2.0	20	85	9	55	60	0	0	40	0.97
18199165--18199196	16	2.1	16	94	5	57	81	0	0	18	0.70
18200322--18200370	25	1.9	26	83	4	64	40	4	2	53	1.32
18200687--18200915	121	1.9	120	82	6	284	36	13	13	36	1.85
18200805--18201121	61	5.2	60	75	12	225	40	12	13	33	1.82
18201179--18201328	62	2.5	58	74	12	133	41	13	16	29	1.86
18201237--18201402	62	2.7	63	73	14	155	37	12	14	35	1.84
18201050--18201443	124	3.2	124	73	9	338	38	11	14	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18206104--18207294	236	5.1	235	76	8	930	31	10	5	52	1.59
18207540--18207572	11	3.1	11	86	8	50	72	18	9	0	1.10
18207600--18207643	20	2.2	20	87	0	61	27	0	9	63	1.24
18207628--18207658	14	2.2	14	94	0	53	12	0	16	70	1.16
18208050--18208113	4	15.8	4	73	15	51	18	0	6	75	1.01
18208047--18208087	9	4.6	9	77	22	50	21	0	2	75	0.92
18208047--18208113	27	2.6	25	83	11	73	19	0	5	74	1.02
18208076--18208113	14	2.5	15	83	12	51	15	0	7	76	1.01
18208050--18208113	31	2.1	30	82	8	76	18	0	6	75	1.01
18212302--18212339	19	2.0	20	89	5	60	84	5	7	2	0.86
18212703--18212754	17	3.3	15	82	12	59	75	0	17	7	1.03
18213352--18213522	79	2.2	79	81	4	202	37	7	22	32	1.83
18213469--18213646	70	2.5	70	87	2	250	34	6	22	35	1.81
18214578--18214900	41	7.9	41	82	4	339	23	11	19	45	1.83
18214580--18214903	83	3.9	82	79	7	336	23	11	19	45	1.82
18214580--18214912	123	2.7	121	81	6	373	24	11	19	44	1.83
18215130--18215173	18	2.4	18	80	0	52	77	4	9	9	1.12
18215367--18215411	20	2.3	19	81	11	56	35	4	8	51	1.54
18215854--18215894	14	2.7	16	81	14	59	17	0	7	75	1.02
18215855--18215896	22	1.9	22	85	0	57	16	0	7	76	1.00
18216106--18216140	8	4.2	8	89	7	52	88	2	0	8	0.61
18216111--18216140	9	3.4	9	90	9	53	90	0	0	10	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18216106--18216140	17	2.1	17	94	0	61	88	2	0	8	0.61
18216547--18216582	10	3.6	10	88	11	56	80	2	0	16	0.83
18217394--18217441	21	2.3	20	80	16	53	37	10	0	52	1.36
18222162--18222188	3	9.0	3	100	0	54	66	0	0	33	0.92
18230277--18230329	26	2.0	26	85	0	70	32	15	13	39	1.85
18239548--18239609	32	1.9	32	83	6	81	25	14	22	37	1.92
18248030--18248084	21	2.6	21	77	5	58	27	30	21	20	1.98
18255816--18255853	18	2.1	18	95	0	67	36	2	23	36	1.69
18255847--18255885	20	2.0	20	94	0	69	28	2	20	48	1.62
18256495--18256565	21	3.4	21	76	3	90	32	22	23	21	1.98
18256513--18256585	20	3.6	20	77	3	92	30	20	23	26	1.99
18256495--18256585	41	2.2	41	100	0	182	30	21	23	24	1.99
18260130--18260478	178	2.0	178	87	2	504	35	15	11	36	1.84
18267107--18267207	28	3.6	28	86	0	139	19	1	34	43	1.63
18271415--18271520	28	3.8	28	82	2	115	29	0	26	43	1.61
18273528--18273600	29	2.5	30	84	6	87	34	16	5	43	1.71
18274039--18274077	10	3.9	10	86	0	60	64	12	0	23	1.28
18274671--18274711	20	2.1	20	86	4	57	68	2	4	24	1.22
18274704--18274740	14	2.6	14	91	4	56	54	0	0	45	1.00
18274786--18274810	11	2.3	11	100	0	50	48	0	0	52	1.00
18274790--18274829	19	2.1	19	85	0	53	50	2	0	47	1.14
18275383--18275462	30	2.6	31	88	5	128	51	23	2	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18277091--18277116	3	8.7	3	100	0	52	69	0	0	30	0.89
18278951--18278979	15	1.9	15	100	0	58	41	0	0	58	0.98
18278828--18279088	91	2.8	91	79	9	251	43	2	3	50	1.33
18278918--18279041	31	3.9	31	70	15	85	40	0	4	54	1.25
18278752--18279089	97	3.6	92	77	14	275	43	2	3	50	1.33
18279054--18279086	16	2.1	16	88	11	50	54	3	0	42	1.15
18278752--18279149	95	4.2	94	75	13	329	43	2	3	50	1.32
18281529--18281618	45	2.0	45	93	0	153	37	14	17	30	1.90
18283332--18283490	79	2.0	79	95	0	282	32	11	17	38	1.86
18283868--18283910	19	2.3	19	84	4	61	0	9	9	81	0.88
18288836--18288878	20	2.2	19	84	16	52	6	20	0	72	1.08
18291440--18291500	28	2.1	29	82	8	72	50	0	8	40	1.32
18297841--18297904	24	2.7	24	87	0	101	67	7	1	23	1.26
18297827--18297906	6	13.2	6	78	2	79	65	8	1	25	1.29
18298340--18298661	83	3.9	84	78	3	319	35	16	17	31	1.91
18298344--18298710	83	4.4	84	77	6	244	34	15	17	32	1.91
18298336--18298666	166	2.0	167	82	4	400	35	16	17	31	1.92
18300149--18300173	7	3.6	7	100	0	50	12	40	0	48	1.40
18300179--18300215	15	2.6	14	87	8	56	8	10	0	81	0.89
18300196--18300231	19	1.9	18	94	5	63	11	11	0	77	0.99
18301770--18301801	3	10.7	3	93	0	55	68	3	0	28	1.04
18301800--18301837	3	12.7	3	94	0	58	63	31	5	0	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18305326--18305372	19	2.3	20	85	7	60	65	10	2	21	1.33
18309471--18309498	6	4.7	6	100	0	56	46	0	0	53	1.00
18310530--18310597	6	11.2	6	77	3	64	66	7	1	25	1.26
18310529--18310597	30	2.3	31	84	5	95	65	8	1	24	1.30
18311105--18311148	18	2.5	17	82	10	52	77	0	9	13	0.99
18311400--18311431	11	2.6	13	80	19	50	34	0	12	53	1.39
18311964--18312004	19	2.2	19	86	0	55	19	0	4	75	0.98
18315744--18315791	24	2.0	24	87	0	69	72	2	20	4	1.11
18316168--18316219	16	3.2	16	81	7	61	78	0	13	7	0.94
18316153--18316219	9	6.9	9	76	15	62	79	0	14	5	0.92
18317006--18317049	23	1.9	23	86	9	63	43	4	25	27	1.74
18317371--18317427	21	2.6	22	83	2	71	35	10	19	35	1.86
18317468--18317507	21	1.9	21	89	0	62	40	7	17	35	1.78
18317388--18317567	79	2.3	79	88	1	263	35	13	18	32	1.89
18317489--18317625	58	2.4	58	89	0	211	35	13	18	32	1.89
18317588--18317644	21	2.8	21	89	2	80	35	10	19	35	1.86
18318065--18318399	41	8.3	41	80	6	283	23	11	21	43	1.85
18318069--18318399	124	2.7	123	82	4	361	23	11	21	43	1.85
18318276--18318392	36	3.1	36	82	6	135	24	11	20	43	1.84
18318111--18318399	83	3.6	79	80	6	253	23	11	21	43	1.84
18318777--18318838	27	2.2	28	83	8	74	69	9	16	4	1.33
18323460--18323503	23	1.9	23	90	9	72	45	4	22	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18323795--18323836	21	2.0	21	90	0	66	40	9	14	35	1.78
18323859--18323913	21	2.7	21	86	5	69	43	7	12	36	1.71
18323942--18323993	21	2.5	21	84	3	70	36	9	19	34	1.84
18323954--18323993	21	1.9	21	94	0	71	37	7	20	35	1.81
18323810--18324083	79	3.5	79	86	0	379	37	11	18	32	1.86
18324493--18324784	41	7.2	41	78	8	197	25	12	19	43	1.86
18324493--18324786	82	3.6	82	80	6	334	24	12	19	43	1.86
18330266--18330313	24	2.0	24	87	0	69	68	2	25	4	1.18
18330679--18330722	19	2.3	19	80	11	54	75	0	18	6	1.02
18331535--18331578	23	1.9	23	86	9	63	43	6	25	25	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160