genome.fa.s334.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  14  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4241523--4241563	18	2.3	18	86	0	55	2	39	4	53	1.35
4241516--4241581	27	2.4	27	79	0	69	4	36	9	50	1.55
4242022--4242063	16	2.6	17	81	7	52	64	0	2	33	1.07
4242972--4243147	50	3.4	52	78	12	193	42	8	0	49	1.33
4242954--4243147	104	1.9	104	84	9	263	42	7	0	50	1.31
4243137--4243209	31	2.4	29	82	12	94	41	10	2	45	1.54
4243762--4243837	35	2.2	35	88	2	109	47	7	1	43	1.40
4243787--4243871	35	2.4	36	82	9	95	44	9	0	45	1.36
4243821--4243869	17	2.7	18	81	6	55	40	12	0	46	1.41
4244086--4244140	20	2.8	20	89	8	78	50	0	0	49	1.00
4244143--4244172	12	2.6	12	94	5	53	66	3	0	30	1.07
4247833--4247961	60	2.1	61	80	12	149	50	3	3	43	1.33
4248109--4248199	43	2.1	42	82	6	103	48	2	4	45	1.34
4248233--4248296	26	2.5	25	78	16	69	46	1	1	50	1.20
4249086--4249168	33	2.5	33	98	2	157	28	19	12	39	1.87
4251511--4251547	3	12.3	3	100	0	74	67	0	0	32	0.91
4254550--4254600	23	2.2	23	89	6	77	45	1	0	52	1.12
4254723--4254791	24	2.8	24	78	6	68	56	1	1	40	1.17
4255122--4255148	5	5.4	5	100	0	54	81	0	0	18	0.69
4256990--4257032	22	2.0	22	90	0	68	62	0	0	37	0.95
4260781--4260830	20	2.4	21	83	12	68	38	0	0	62	0.96
4261847--4261893	17	2.9	15	87	12	58	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4265076--4265112	2	18.5	2	94	0	65	51	0	0	48	1.00
4267261--4267300	18	2.2	19	95	4	73	42	7	5	45	1.54
4267269--4267311	18	2.3	18	88	4	59	44	9	6	39	1.64
4267276--4267690	61	7.0	58	81	9	428	38	10	4	46	1.59
4267279--4267701	117	3.6	116	81	6	494	38	10	4	46	1.59
4267770--4267841	4	18.5	4	78	13	55	70	4	2	22	1.17
4268658--4268698	16	2.8	14	82	13	55	80	2	0	17	0.82
4268964--4269560	86	6.9	86	77	9	523	44	14	19	21	1.86
4268970--4269422	178	2.6	178	80	8	475	44	15	18	21	1.87
4268931--4269750	172	4.8	171	74	12	652	44	14	19	21	1.86
4269492--4269629	69	2.0	69	82	0	168	46	12	21	19	1.83
4269558--4269750	86	2.2	86	90	1	298	45	16	18	20	1.86
4270636--4270748	53	2.2	53	86	1	156	23	14	8	53	1.68
4281287--4281395	24	4.5	24	72	16	75	74	0	14	11	1.08
4281287--4281395	16	6.8	16	75	13	75	74	0	14	11	1.08
4281302--4281355	8	6.6	9	77	16	55	70	0	18	11	1.16
4282679--4282739	21	2.9	21	87	0	95	34	4	16	44	1.69
4282860--4282898	20	2.0	20	89	0	60	35	7	20	35	1.81
4282812--4282903	44	2.1	45	82	10	109	36	9	14	39	1.79
4283237--4283277	17	2.4	17	95	0	73	29	9	7	53	1.60
4283271--4283315	18	2.5	18	85	7	56	40	11	8	40	1.72
4283672--4283711	17	2.4	17	87	8	55	15	2	5	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4284763--4284793	4	7.8	4	92	0	53	19	0	3	77	0.90
4285710--4285765	16	3.6	16	76	11	53	19	5	0	75	1.00
4289610--4289767	78	2.0	78	93	0	271	44	13	15	25	1.83
4293507--4293544	6	6.3	6	84	9	51	52	28	0	18	1.45
4293511--4293548	12	3.2	12	85	14	53	60	23	0	15	1.35
4293772--4293814	3	14.7	3	95	4	79	65	0	34	0	0.93
4293775--4293819	9	5.2	8	94	2	54	62	0	37	0	0.96
4293946--4293970	1	25.0	1	100	0	50	100	0	0	0	0.00
4295239--4295266	2	14.0	2	100	0	56	50	0	0	50	1.00
4304163--4304209	13	3.5	13	77	13	51	36	0	0	63	0.94
4304161--4304209	27	1.9	26	84	12	66	38	0	0	61	0.96
4305068--4305125	30	1.9	30	86	6	82	48	3	10	37	1.54
4305967--4306009	19	2.4	18	77	11	52	51	4	0	44	1.22
4307873--4307919	18	2.9	15	77	17	58	34	0	0	65	0.93
4307883--4307918	18	2.0	18	94	0	63	30	0	0	69	0.89
4311346--4311417	25	3.0	25	76	13	69	34	2	1	61	1.19
4311589--4311616	2	14.0	2	100	0	56	50	0	0	50	1.00
4315122--4315172	10	5.4	9	77	13	50	70	3	0	25	1.04
4315903--4315937	18	2.0	18	88	5	54	74	11	0	14	1.08
4316325--4316358	17	2.0	17	100	0	68	29	11	17	41	1.85
4316375--4316403	13	2.3	13	94	5	51	79	13	0	6	0.93
4320191--4320232	19	2.2	19	86	0	57	23	26	11	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4324176--4324211	2	18.5	2	94	5	65	47	0	0	52	1.00
4343154--4343192	2	19.5	2	100	0	78	48	0	51	0	1.00
4354485--4354524	19	2.0	19	85	9	53	22	7	5	65	1.38
4357498--4357525	2	14.0	2	100	0	56	50	0	50	0	1.00
4357939--4358004	30	2.2	31	86	8	91	50	0	0	50	1.00
4357928--4357995	18	3.6	19	72	9	50	47	0	0	52	1.00
4359699--4359736	19	2.0	20	89	5	60	15	15	0	68	1.22
4364408--4364461	28	2.0	28	92	3	92	40	1	14	42	1.57
4365766--4365802	19	1.9	19	88	0	56	10	21	0	67	1.21
4367985--4368022	20	1.9	20	89	10	60	52	2	0	44	1.14
4373118--4373159	18	2.3	18	84	8	59	57	0	0	42	0.99
4373204--4373306	20	4.8	20	73	16	66	40	2	2	53	1.31
4373199--4373306	43	2.5	42	78	13	112	41	2	2	52	1.30
4373494--4373552	29	2.0	29	90	0	91	40	0	10	49	1.37
4373532--4373597	24	2.7	24	75	15	64	54	0	3	42	1.15
4373625--4373672	24	2.0	24	84	8	62	52	0	0	47	1.00
4373613--4373676	21	3.0	20	72	18	56	45	0	0	54	0.99
4374535--4376817	857	2.7	850	82	3	2586	35	21	8	34	1.83
4385882--4386275	106	3.7	107	78	3	359	43	7	5	44	1.54
4385968--4386010	23	2.0	22	82	17	54	37	4	4	53	1.43
4387457--4387488	3	10.7	3	100	0	64	31	0	0	68	0.90
4388809--4388869	22	2.8	20	74	13	59	55	0	4	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4388803--4388869	21	3.1	21	72	21	57	56	0	4	38	1.19
4389054--4389082	12	2.3	13	94	5	51	65	6	0	27	1.18
4389861--4389920	24	2.5	24	86	0	84	46	6	8	38	1.60
4392731--4392779	3	16.3	3	100	0	98	34	0	0	65	0.93
4392919--4392961	13	3.2	13	78	15	52	41	4	2	51	1.35
4392961--4392994	14	2.4	14	100	0	68	26	0	0	73	0.83
4392969--4393009	14	3.1	14	86	6	50	34	0	0	65	0.93
4393099--4393142	18	2.7	15	83	16	52	15	2	6	75	1.12
4393092--4393142	14	3.4	14	76	23	50	15	1	5	76	1.07
4393117--4393160	23	1.9	23	86	9	63	20	0	2	77	0.88
4393164--4393200	19	1.9	19	100	0	74	72	5	0	21	1.04
4393168--4393235	19	3.6	19	77	15	70	73	7	0	19	1.06
4393165--4393243	19	3.8	20	73	23	67	75	6	0	17	1.00
4395600--4395703	34	3.1	34	84	1	138	45	3	9	41	1.55
4395659--4395715	24	2.3	25	76	11	64	47	3	5	43	1.43
4397612--4397637	6	4.3	6	100	0	52	0	50	0	50	1.00
4400729--4400772	2	22.0	2	80	0	52	50	6	40	2	1.42
4407694--4407718	9	2.8	9	100	0	50	60	0	0	40	0.97
4408083--4408147	26	2.5	26	80	12	62	44	3	10	41	1.55
4408761--4409147	193	2.0	193	93	0	666	37	11	13	37	1.81
4409659--4409729	25	2.8	25	77	8	65	35	4	19	40	1.71
4409675--4409835	85	1.9	85	80	5	191	38	3	16	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4410072--4410205	61	2.2	60	81	9	148	35	2	14	47	1.60
4410360--4410415	26	2.2	26	83	6	69	44	1	10	42	1.49
4411091--4411116	13	2.0	13	100	0	52	84	0	0	15	0.62
4418250--4418277	14	2.0	14	100	0	56	0	21	14	64	1.29
4421993--4422059	33	2.0	33	100	0	134	43	29	17	8	1.80
4427629--4427662	2	17.0	2	93	0	59	47	2	0	50	1.16
4430177--4430210	17	2.0	17	94	0	59	41	20	5	32	1.76
4432199--4432251	26	2.0	26	85	0	70	37	1	3	56	1.28
4432790--4432840	26	1.9	26	84	11	68	29	0	1	68	1.00
4451232--4451292	25	2.5	24	79	10	61	59	0	6	34	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160