genome.fa.s334.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  152  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30202096--30203474	371	3.7	365	78	7	1167	20	29	22	27	1.98
30208449--30209850	371	3.8	369	81	5	1409	23	27	19	29	1.98
30215997--30216034	3	12.7	3	100	0	76	31	0	0	68	0.90
30218776--30218813	20	1.9	20	89	10	60	18	10	10	60	1.57
30219341--30219403	19	2.9	23	71	22	64	55	0	1	42	1.09
30219339--30219387	18	2.8	18	84	9	57	61	0	2	36	1.08
30219339--30219389	19	2.7	18	84	6	66	60	0	1	37	1.08
30220235--30220260	2	13.0	2	100	0	52	50	0	0	50	1.00
30222405--30222433	2	14.5	2	100	0	58	48	0	0	51	1.00
30223276--30223317	2	21.0	2	95	0	75	47	0	2	50	1.14
30238252--30238652	143	2.7	148	82	9	417	45	5	13	35	1.67
30238378--30238700	156	2.1	155	90	4	499	44	4	13	36	1.65
30239268--30239297	2	15.0	2	100	0	60	50	0	0	50	1.00
30260489--30260516	13	2.2	13	100	0	56	14	21	14	50	1.78
30265844--30265878	3	11.7	3	100	0	70	31	0	0	68	0.90
30276275--30276312	3	12.7	3	100	0	76	34	0	0	65	0.93
30285886--30285929	22	2.0	22	82	8	54	34	0	0	65	0.93
30285963--30286421	233	2.0	236	90	1	726	35	20	11	32	1.89
30306383--30306423	22	1.9	22	90	5	66	31	2	4	60	1.30
30311987--30312040	24	2.2	24	93	0	90	42	33	5	18	1.73
30315805--30315885	31	2.6	31	86	0	108	28	19	14	37	1.92
30317849--30317878	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30318436--30318506	31	2.3	31	90	0	106	25	23	25	25	2.00
30318567--30318604	20	1.9	20	94	0	67	31	26	18	23	1.97
30318891--30318915	12	2.1	12	100	0	50	16	44	40	0	1.47
30319060--30319518	60	7.8	59	88	7	659	43	8	13	34	1.74
30322960--30322989	15	2.1	14	93	6	51	50	6	36	6	1.55
30327889--30327936	8	5.8	8	88	9	51	81	0	8	10	0.88
30327878--30327936	17	3.3	17	83	7	64	81	1	6	10	0.94
30327890--30327974	17	4.8	17	78	17	84	75	0	12	11	1.05
30327889--30327981	9	10.6	9	80	15	88	76	0	12	10	1.02
30327890--30327986	17	5.6	16	76	17	70	74	0	14	11	1.08
30328999--30329416	41	10.2	40	88	7	599	22	16	20	40	1.91
30328999--30329384	165	2.3	164	93	2	659	22	16	20	40	1.91
30329396--30329434	20	2.0	20	89	0	60	35	5	20	38	1.75
30329355--30329475	61	2.0	61	85	6	165	27	13	21	38	1.90
30329416--30329717	42	7.3	42	90	3	445	23	16	24	35	1.95
30329416--30329717	83	3.7	83	91	2	450	23	16	24	35	1.95
30329416--30329717	125	2.4	123	90	5	468	23	16	24	35	1.95
30329727--30329825	8	12.6	8	77	12	98	82	10	0	7	0.83
30329726--30329825	10	10.6	9	77	17	71	83	10	0	7	0.82
30329726--30329825	48	2.1	47	85	9	132	83	10	0	7	0.82
30329725--30329818	1	94.0	1	72	0	53	84	9	0	6	0.79
30330020--30330046	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30330548--30330601	25	2.2	24	83	6	63	35	5	18	40	1.74
30330609--30330679	31	2.3	31	87	0	97	26	23	23	25	2.00
30331242--30331702	59	7.7	59	83	10	566	43	7	14	33	1.74
30331243--30331702	116	3.9	117	88	5	601	43	7	14	33	1.74
30337445--30337523	38	2.0	40	87	4	117	25	13	10	50	1.73
30340008--30340051	13	3.2	13	78	12	52	25	9	2	63	1.35
30340716--30341046	167	2.0	167	89	2	513	25	22	29	22	1.99
30347076--30347124	23	2.1	24	82	17	59	46	0	2	51	1.12
30347187--30347224	20	1.9	20	88	0	58	76	0	5	18	0.97
30356440--30356477	9	4.3	9	83	6	51	71	0	0	28	0.87
30358921--30359076	52	3.0	51	83	3	195	40	8	25	26	1.83
30359700--30359833	26	5.0	26	67	16	76	41	7	29	21	1.80
30359778--30359867	24	3.6	24	72	12	74	41	6	32	20	1.78
30359595--30359842	82	3.0	82	98	0	478	42	8	28	20	1.81
30360126--30360167	11	3.8	11	87	0	66	19	0	30	50	1.48
30360125--30360167	22	2.0	22	95	0	77	20	0	30	48	1.50
30360193--30360348	52	3.0	52	85	1	197	42	8	22	26	1.81
30362712--30362736	13	1.9	13	100	0	50	52	8	8	32	1.60
30369973--30370025	29	1.9	26	88	11	79	35	24	1	37	1.67
30371048--30371123	40	1.9	40	91	0	125	17	19	6	56	1.62
30379487--30379526	14	2.9	14	80	0	53	45	0	0	55	0.99
30380702--30380743	20	2.0	20	90	4	66	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30382365--30382410	24	2.0	23	86	4	65	50	0	2	47	1.13
30382387--30382430	19	2.3	19	80	7	54	45	2	2	50	1.27
30382437--30382480	11	4.0	11	82	8	54	52	0	0	47	1.00
30387457--30387483	14	1.9	14	100	0	54	0	37	0	62	0.95
30389436--30389479	14	3.1	14	83	3	52	68	2	29	0	1.02
30406661--30406691	12	2.5	13	94	5	55	29	22	25	22	1.99
30411746--30411817	11	6.8	11	71	15	62	47	1	1	50	1.18
30416739--30416820	41	1.9	43	85	11	116	41	2	7	48	1.44
30419761--30419794	14	2.5	14	90	4	52	82	8	0	8	0.85
30428533--30428575	2	21.5	2	90	0	68	55	0	0	44	0.99
30428533--30428575	16	2.7	16	100	0	86	55	0	0	44	0.99
30435704--30435733	2	15.0	2	100	0	60	50	0	0	50	1.00
30439572--30439600	10	2.7	11	89	10	51	37	0	0	62	0.96
30447569--30447707	69	2.0	70	87	1	199	33	8	20	36	1.84
30469555--30469612	19	2.8	21	76	12	57	53	0	0	46	1.00
30486466--30486517	23	2.3	23	82	0	59	50	0	3	46	1.20
30486473--30486513	16	2.7	16	79	20	52	48	0	0	51	1.00
30497045--30497085	17	2.4	18	80	12	50	51	0	4	43	1.23
30533652--30533695	22	2.0	22	90	0	70	43	11	11	34	1.77
30533705--30533729	8	3.1	8	100	0	50	52	12	12	24	1.72
30537556--30537599	22	2.0	22	95	0	79	43	13	11	31	1.80
30538733--30538795	33	1.9	33	93	0	108	19	9	25	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30551779--30551823	19	2.3	18	82	14	54	53	2	4	40	1.33
30551776--30551826	21	2.5	21	81	9	61	52	1	5	39	1.37
30555745--30555777	4	8.5	4	93	6	59	51	27	0	21	1.48
30557311--30557339	10	3.0	10	95	5	51	93	0	6	0	0.36
30557791--30557819	2	15.0	2	92	7	51	51	0	0	48	1.00
30559859--30559883	11	2.3	11	100	0	50	16	68	16	0	1.22
30562731--30562756	6	4.3	6	100	0	52	30	0	15	53	1.42
30569401--30569502	23	4.5	23	67	11	66	47	0	0	52	1.00
30569438--30569497	22	2.7	21	74	18	59	48	0	0	51	1.00
30569458--30569496	16	2.4	16	87	8	53	51	0	0	48	1.00
30569370--30569501	68	2.0	67	82	7	160	47	0	0	51	1.06
30573424--30573494	29	2.3	32	83	9	85	57	1	0	40	1.07
30574410--30574443	16	2.1	16	88	0	50	35	0	0	64	0.94
30574412--30574455	17	2.5	18	88	3	63	34	0	0	65	0.93
30576639--30576674	3	12.0	3	100	0	72	66	0	0	33	0.92
30576641--30576709	9	8.1	8	79	20	54	63	4	0	31	1.14
30576644--30576750	45	2.4	45	90	4	164	60	8	0	30	1.26
30583232--30583274	22	2.0	22	90	0	68	25	18	11	44	1.84
30588611--30588686	36	2.1	36	80	7	82	34	0	2	63	1.09
30589635--30589681	16	3.1	14	80	16	58	55	0	2	42	1.12
30589670--30589731	21	3.0	21	81	4	65	40	3	0	56	1.15
30589785--30589829	17	2.6	18	82	3	56	26	6	0	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30590940--30590991	26	1.9	27	84	7	70	50	3	3	42	1.39
30596640--30596665	12	2.2	12	100	0	52	30	15	26	26	1.96
30600367--30600434	34	2.0	34	91	0	109	41	13	13	32	1.83
30608915--30608948	12	2.8	12	91	8	52	64	0	0	35	0.94
30610264--30610293	2	15.0	2	100	0	60	50	0	50	0	1.00
30615037--30615069	10	3.4	10	91	8	59	72	0	0	27	0.85
30615991--30616024	14	2.4	14	90	0	59	64	0	0	35	0.94
30617200--30617242	18	2.5	17	88	3	59	41	0	0	58	0.98
30625017--30625077	32	1.9	32	84	15	83	47	0	1	50	1.10
30625103--30625150	21	2.3	21	82	7	62	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160