Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  27  of  160  ( 19195 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6971637--6972034
58
6.7
56
81
13
424
36
12
6
43
1.70
6971637--6972032
120
3.3
119
86
6
520
37
12
6
43
1.69
6972061--6972113
21
2.5
20
82
8
70
77
3
7
11
1.10
6972045--6972148
5
20.4
5
74
16
81
76
2
4
15
1.06
6972045--6972136
17
5.6
16
74
14
80
78
2
5
14
1.02
6972812--6972858
21
2.3
20
75
13
51
8
27
6
57
1.53
6973046--6973089
21
2.0
22
86
4
63
68
6
4
20
1.31
6973195--6973289
15
5.9
15
77
20
52
73
1
0
25
0.90
6973229--6973303
5
14.6
5
83
9
73
74
0
1
24
0.89
6973218--6973303
23
3.7
23
76
14
79
74
1
1
23
0.96
6978639--6978770
65
2.0
65
100
0
264
40
9
12
37
1.74
6980284--6980349
30
2.2
30
83
5
80
57
9
3
30
1.45
6980677--6980714
18
2.1
18
85
9
51
68
2
5
23
1.23
6983309--6983360
7
7.3
7
85
12
61
80
0
1
17
0.80
6983269--6983360
14
6.5
14
72
13
64
76
2
2
19
1.00
6995695--6995738
21
2.1
21
83
8
54
65
2
0
31
1.05
7000310--7000342
5
6.6
5
92
0
57
15
0
3
81
0.80
7003134--7003173
21
1.9
21
89
0
62
55
17
15
12
1.70
7004878--7004910
17
1.9
17
100
0
66
42
6
9
42
1.61
7005058--7005090
17
1.9
17
93
0
57
42
9
9
39
1.68
7005141--7005210
35
2.0
35
97
0
131
48
18
2
30
1.62
7006951--7007008
27
2.1
27
83
0
71
51
6
6
34
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7014914--7014946
2
16.5
2
100
0
66
51
0
48
0
1.00
7026831--7026885
18
2.9
18
78
5
56
36
0
5
58
1.21
7027295--7027359
23
2.8
23
77
9
60
41
0
1
56
1.08
7027469--7027502
2
17.0
2
87
0
50
55
0
0
44
0.99
7028182--7028264
29
2.8
30
81
5
89
39
6
3
50
1.44
7034131--7034220
24
3.8
24
76
7
85
38
2
3
55
1.29
7038977--7039014
3
12.7
3
100
0
76
68
0
0
31
0.90
7039585--7039874
82
3.5
81
77
8
264
37
16
14
31
1.88
7045029--7045089
23
2.7
23
80
14
65
42
4
24
27
1.75
7046583--7046642
18
3.2
18
76
11
50
70
5
11
13
1.33
7047269--7047338
25
2.9
23
75
10
59
10
10
5
74
1.22
7047698--7047730
2
16.5
2
100
0
66
51
0
0
48
1.00
7052881--7052939
18
3.4
17
76
21
52
35
3
0
61
1.13
7053346--7053377
2
16.0
2
93
0
55
53
0
46
0
1.00
7062545--7062604
29
2.1
29
83
0
75
23
11
13
51
1.73
7068001--7068048
25
1.9
24
86
4
60
31
4
14
50
1.62
7070052--7070110
27
2.1
28
84
3
75
50
1
0
47
1.11
7071000--7071026
2
13.5
2
100
0
54
51
0
0
48
1.00
7071085--7071124
20
2.0
20
85
9
55
57
0
0
42
0.98
7071085--7071123
21
1.9
20
84
5
51
58
0
0
41
0.98
7082748--7082774
2
13.5
2
100
0
54
51
48
0
0
1.00
7089458--7089517
30
2.0
31
86
3
86
45
0
5
50
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7089481--7089518
17
2.2
17
90
0
58
44
0
0
55
0.99
7089506--7089584
30
2.7
29
83
13
99
56
0
2
40
1.12
7090948--7090995
21
2.2
23
85
14
66
22
2
22
52
1.58
7091024--7091063
20
2.0
20
85
0
53
47
5
7
40
1.54
7093982--7094050
34
2.0
34
100
0
138
27
26
11
34
1.91
7099232--7099273
21
2.0
21
86
9
59
28
0
2
69
1.01
7112729--7112996
49
5.4
50
77
5
231
32
10
17
39
1.84
7112715--7112988
99
2.8
99
80
3
266
32
10
16
39
1.84
7119163--7119200
8
4.8
8
84
12
51
78
0
10
10
0.95
7119162--7119201
9
4.8
9
82
14
50
80
0
10
10
0.92
7120273--7120664
43
9.0
43
80
5
378
29
11
16
42
1.83
7120273--7120677
87
4.6
87
81
9
355
28
11
16
43
1.81
7124196--7124277
29
2.8
30
78
12
100
35
1
2
60
1.17
7124253--7124286
16
2.2
15
89
5
50
44
2
0
52
1.16
7124292--7124428
30
4.7
30
73
11
97
49
1
5
43
1.35
7136386--7136419
2
16.5
2
93
6
59
47
0
2
50
1.16
7136419--7136451
2
16.5
2
100
0
66
0
0
48
51
1.00
7140525--7140576
6
8.7
6
83
8
70
44
0
3
51
1.19
7140643--7140687
23
2.0
23
86
0
63
62
4
0
33
1.15
7144386--7144433
19
2.6
18
76
6
51
47
0
2
50
1.12
7144485--7144518
13
2.6
13
85
0
50
52
0
0
47
1.00
7146309--7146561
127
2.0
130
89
2
395
33
10
9
47
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7147626--7147838
67
3.2
65
81
11
213
24
8
8
58
1.56
7149619--7149660
3
14.0
3
100
0
84
33
0
0
66
0.92
7151724--7152378
219
3.0
217
79
4
683
55
9
11
23
1.64
7152747--7153391
216
3.0
213
80
6
692
55
8
10
25
1.62
7160472--7160496
7
3.6
7
100
0
50
32
0
0
68
0.90
7161413--7161719
151
2.0
150
94
3
533
52
8
10
29
1.64
7162176--7162209
2
17.0
2
100
0
68
50
0
0
50
1.00
7163802--7163861
30
2.0
29
83
6
75
51
5
3
40
1.40
7164196--7164248
21
2.5
22
79
11
58
41
0
3
54
1.18
7164637--7164662
2
13.0
2
100
0
52
50
0
0
50
1.00
7168428--7168468
20
2.0
20
85
0
55
39
2
7
51
1.43
7174640--7174735
49
2.0
49
91
0
156
33
18
16
31
1.94
7178325--7178360
11
3.4
11
88
7
56
16
0
25
58
1.38
7178457--7178487
13
2.4
13
100
0
62
70
12
0
16
1.16
7178459--7178499
12
3.3
12
89
3
55
70
14
0
14
1.16
7178645--7178701
29
1.9
30
82
10
73
68
14
0
17
1.21
7179901--7179945
18
2.6
18
82
3
56
40
17
8
33
1.81
7179914--7179966
18
2.9
18
83
5
63
39
15
9
35
1.79
7180063--7180098
16
2.2
17
90
5
56
36
11
16
36
1.84
7180137--7180185
18
2.7
18
100
0
98
40
12
10
36
1.77
7180427--7180536
22
4.8
24
75
10
104
46
12
7
33
1.70
7180429--7180558
22
5.7
23
75
8
97
46
13
6
34
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7180352--7180576
46
4.9
46
77
6
190
42
13
9
34
1.76
7180352--7180575
92
2.4
92
81
6
233
42
13
8
34
1.75
7185150--7185203
27
2.0
28
92
3
92
62
14
3
18
1.46
7186547--7186576
13
2.2
14
94
5
53
46
13
6
33
1.69
7186638--7186684
13
3.5
13
82
5
58
80
2
0
17
0.80
7186638--7186709
27
2.7
27
85
6
85
81
4
1
12
0.89
7187609--7187647
13
2.7
16
74
25
50
74
7
0
17
1.05
7187618--7187686
24
2.8
25
88
4
104
72
10
0
17
1.11
7187622--7187686
12
5.3
12
79
3
58
72
10
0
16
1.12
7187620--7187674
12
4.4
12
86
4
74
72
9
0
18
1.10
7187849--7187893
15
3.1
15
80
3
56
46
2
0
51
1.13
7189651--7189697
23
2.0
23
84
8
60
68
0
0
31
0.90
7198192--7198218
2
13.5
2
100
0
54
48
0
0
51
1.00
7199298--7199328
16
2.0
15
93
6
53
12
0
3
83
0.75
7199539--7199598
29
2.0
30
84
9
79
73
6
1
18
1.14
7199565--7199598
17
2.0
17
88
11
52
76
2
0
20
0.92
7199551--7199618
29
2.4
28
76
11
68
77
8
0
13
0.98
7200422--7200480
22
2.7
21
81
5
73
79
3
0
16
0.86
7200422--7200480
28
2.1
27
84
9
75
79
3
0
16
0.86
7200458--7200482
12
2.1
12
100
0
50
84
8
0
8
0.79
7200838--7201193
41
8.6
41
76
9
231
47
15
12
23
1.80
7200838--7201088
43
6.0
40
78
9
200
46
16
13
23
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7200849--7201028
83
2.2
86
83
5
235
46
15
13
25
1.82
7201704--7201769
25
2.8
24
79
6
80
40
12
7
39
1.71
7201704--7201798
23
4.2
21
76
11
64
38
12
10
37
1.78
7202124--7202277
63
2.4
63
81
2
184
29
24
12
33
1.93
7203363--7203401
9
4.3
9
87
12
62
2
10
0
87
0.65
7203902--7203948
23
2.1
23
84
4
60
53
17
2
27
1.55
7207342--7207389
25
1.9
24
83
8
60
41
6
2
50
1.39
7208304--7208328
11
2.3
11
100
0
50
80
0
0
20
0.72
7209529--7209585
30
1.9
30
100
0
114
24
24
14
36
1.92
7217197--7217227
15
2.1
15
94
5
55
67
12
6
12
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160