genome.fa.s334.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  65  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13509487--13509530	18	2.5	18	81	3	54	36	22	11	29	1.89
13509518--13509562	18	2.4	19	88	7	65	31	11	11	46	1.74
13509787--13509927	66	2.1	66	81	0	156	20	24	11	43	1.84
13513212--13513241	3	10.0	3	100	0	60	33	0	0	66	0.92
13518743--13518779	15	2.2	17	86	13	51	13	0	8	78	0.96
13519133--13519166	10	3.5	10	84	8	52	76	0	2	20	0.92
13519502--13519544	13	3.4	12	81	9	50	76	0	6	16	0.99
13519502--13519544	6	6.8	6	82	10	50	76	0	6	16	0.99
13525364--13525415	21	2.5	22	84	9	72	34	21	7	36	1.82
13525493--13525531	20	2.0	20	89	0	60	46	17	5	30	1.70
13525588--13525672	38	2.3	38	83	6	102	35	14	16	34	1.89
13525792--13526007	38	5.5	38	78	10	229	31	12	15	41	1.84
13525875--13526073	44	4.8	42	69	23	145	31	11	14	42	1.81
13525808--13526073	120	2.2	120	91	0	408	31	11	14	42	1.81
13525920--13526032	38	3.0	38	85	3	140	30	12	14	42	1.82
13525875--13526118	45	5.8	44	70	15	149	33	11	13	41	1.80
13526657--13526819	49	3.3	48	82	6	177	33	14	12	40	1.83
13526809--13526979	90	1.9	91	87	1	254	27	12	18	40	1.87
13527546--13527609	21	3.0	21	90	6	94	18	53	4	23	1.64
13528017--13528058	20	2.1	20	86	0	57	78	14	4	2	1.01
13528775--13528807	17	2.0	17	88	5	50	15	0	15	69	1.19
13529559--13529602	17	2.6	17	78	7	54	79	0	2	18	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13531400--13531441	20	2.1	20	86	0	57	59	9	7	23	1.53
13531631--13531911	143	2.0	144	85	3	388	33	15	12	39	1.84
13532194--13532250	24	2.5	23	83	13	66	64	5	19	10	1.43
13533317--13533371	25	2.4	22	75	21	58	63	0	10	25	1.27
13540288--13540318	3	10.3	3	100	0	62	67	0	0	32	0.91
13540872--13540920	25	2.0	25	83	0	62	16	30	4	48	1.64
13541021--13541072	23	2.3	23	80	12	63	75	1	21	1	1.00
13541019--13541085	23	2.8	23	72	19	57	77	1	17	2	0.97
13542471--13542535	32	2.0	32	81	0	76	32	16	18	32	1.94
13542841--13542915	33	2.3	33	92	0	123	38	14	13	33	1.85
13543217--13543539	140	2.3	139	80	6	323	19	18	13	48	1.80
13543280--13543667	70	5.5	71	74	10	282	19	20	12	48	1.80
13543157--13543732	35	16.5	35	70	12	161	20	20	11	48	1.80
13543157--13543732	105	5.5	103	72	10	328	20	20	11	48	1.80
13544128--13544166	20	2.0	20	84	0	51	58	12	7	20	1.58
13545921--13545968	16	2.8	17	78	9	53	20	6	8	64	1.43
13546379--13546407	14	2.1	14	100	0	58	58	20	0	20	1.39
13546413--13546472	25	2.4	25	91	0	93	48	23	8	20	1.76
13547441--13547492	25	2.0	25	85	7	68	30	5	0	63	1.18
13547433--13547501	35	1.9	34	82	8	84	27	4	0	68	1.09
13547592--13547645	18	3.0	17	81	10	63	27	1	5	64	1.26
13547620--13547666	19	2.4	19	78	3	58	27	0	8	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13547621--13547665	20	2.2	21	84	7	58	24	0	8	66	1.20
13547750--13547801	19	2.7	19	83	13	63	21	0	7	71	1.11
13547789--13547830	17	2.4	18	84	11	61	33	4	0	61	1.17
13547871--13547935	11	6.1	11	73	7	53	23	1	9	66	1.29
13547879--13547935	10	5.5	10	79	6	60	21	1	10	66	1.31
13550985--13551028	19	2.2	21	88	8	65	31	2	9	56	1.43
13550076--13551375	647	2.0	635	85	5	1674	39	9	7	44	1.64
13553315--13553360	20	2.2	20	88	3	65	60	13	6	19	1.54
13553322--13553360	20	1.9	21	94	5	71	56	15	7	20	1.63
13556180--13556335	85	1.8	85	80	5	190	24	10	23	41	1.86
13561526--13561574	3	16.7	3	81	12	57	32	0	2	65	1.04
13562092--13562140	23	2.2	22	88	3	71	53	2	0	44	1.12
13563007--13563039	17	1.9	17	93	0	57	63	3	0	33	1.10
13563481--13563541	22	2.8	22	97	0	113	40	19	14	24	1.89
13563934--13563971	15	2.6	15	91	4	60	52	21	2	23	1.59
13565106--13565316	15	14.9	15	67	13	92	50	0	0	47	1.14
13565103--13565329	18	12.6	18	66	24	90	49	0	1	48	1.15
13565090--13565170	23	3.8	23	76	15	93	50	0	0	49	1.00
13565091--13565301	40	5.2	39	70	19	112	48	0	0	49	1.14
13565090--13565184	40	2.4	42	86	10	119	50	0	0	49	1.00
13565106--13565321	30	7.6	29	69	16	150	49	0	1	48	1.16
13565118--13565300	23	8.3	22	70	14	74	49	1	1	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13565202--13565313	53	2.2	51	78	3	125	49	1	1	47	1.22
13565278--13565352	32	2.4	32	79	2	89	49	1	2	46	1.24
13565103--13565348	94	2.6	92	76	15	231	48	1	1	48	1.19
13568155--13568194	3	13.3	3	100	0	80	65	0	0	35	0.93
13569066--13569104	2	20.0	2	89	5	62	46	0	0	53	1.00
13569284--13569334	24	2.1	24	85	7	77	56	3	11	27	1.52
13576530--13576568	19	2.1	19	100	0	78	10	10	17	61	1.55
13578674--13578753	38	2.1	38	100	0	160	32	13	13	40	1.84
13579444--13579520	30	2.6	30	79	4	84	37	19	6	36	1.78
13580037--13580066	15	1.9	16	93	6	53	53	10	6	30	1.60
13582454--13582506	16	3.2	17	76	7	56	52	16	1	28	1.54
13588002--13588068	19	3.6	19	75	15	68	41	40	2	14	1.62
13588058--13588217	13	12.4	13	67	16	75	45	31	1	21	1.63
13588075--13588117	20	2.2	20	91	0	68	44	34	0	20	1.52
13590377--13590565	37	5.1	37	79	7	177	35	15	10	38	1.83
13590377--13590565	73	2.5	73	82	4	209	35	15	10	38	1.83
13596291--13596554	140	1.9	140	86	1	377	41	9	19	30	1.82
13602766--13602832	14	4.7	14	77	17	59	71	1	17	8	1.19
13604616--13604697	43	1.9	42	82	2	101	30	14	17	37	1.89
13604978--13605086	57	1.9	57	83	1	139	28	11	17	43	1.83
13607624--13607719	49	2.0	49	86	12	135	31	15	8	44	1.76
13607757--13607935	19	9.6	19	75	7	152	41	38	3	16	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13607951--13608065	20	5.8	20	78	11	82	46	26	0	26	1.53
13607969--13608084	13	8.9	14	74	18	90	44	31	0	23	1.59
13607931--13608032	33	3.1	31	83	6	107	46	26	0	27	1.53
13607963--13608100	7	21.5	6	71	22	70	45	29	0	23	1.58
13607974--13608129	33	5.0	31	79	6	122	44	32	1	21	1.60
13609061--13609111	24	2.1	24	96	0	93	70	9	0	19	1.14
13611068--13611095	3	9.3	3	100	0	56	35	0	0	64	0.94
13615576--13615601	4	6.5	4	100	0	52	76	0	0	23	0.78
13616398--13616422	3	8.3	3	100	0	50	68	0	0	32	0.90
13616414--13616737	161	2.0	161	95	1	578	45	6	7	40	1.59
13617148--13617189	17	2.6	16	88	7	66	59	0	0	40	0.97
13619385--13619433	14	3.6	14	81	15	59	83	0	16	0	0.64
13619385--13619425	19	2.1	20	90	4	66	85	0	14	0	0.60
13623974--13624018	21	2.1	21	83	0	54	48	4	20	26	1.68
13624711--13624750	21	1.9	21	84	0	53	37	17	5	40	1.72
13625932--13626068	63	2.2	63	80	2	150	47	9	8	35	1.66
13626920--13626968	20	2.4	21	89	3	73	16	18	26	38	1.91
13627683--13627730	24	2.0	24	95	0	87	41	22	0	35	1.54
13639018--13639051	8	4.2	8	100	0	68	76	11	0	11	1.02
13639533--13639665	51	2.6	52	81	1	160	36	15	9	39	1.80
13639874--13640010	65	2.1	65	86	2	186	45	12	22	19	1.84
13640008--13640077	28	2.5	28	97	2	133	42	20	4	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13640227--13640477	86	2.9	86	81	2	236	35	11	19	33	1.88
13642322--13642349	13	2.2	13	100	0	56	7	14	0	78	0.95
13642333--13642384	22	2.4	22	80	6	61	3	11	7	76	1.12
13642697--13642740	12	3.4	13	81	9	54	13	13	0	72	1.12
13646539--13646637	35	2.8	35	77	7	103	75	4	3	17	1.08
13646539--13646636	34	2.8	34	77	9	99	75	4	3	17	1.09
13646599--13646637	20	1.9	21	89	5	62	79	5	2	12	1.00
13646599--13646628	14	2.2	13	94	5	51	80	6	0	13	0.91
13647107--13647255	51	2.9	51	80	1	154	34	17	10	37	1.83
13648851--13648886	18	1.9	18	94	5	63	5	25	0	69	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160