genome.fa.s334.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  24  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6395026--6395076	9	5.3	9	84	11	57	82	0	9	7	0.85
6395027--6395069	9	4.7	9	88	5	59	86	0	6	6	0.72
6395028--6395061	17	1.9	17	88	5	50	88	0	5	5	0.64
6395024--6395080	19	2.8	20	79	15	73	80	0	10	8	0.90
6395350--6395408	31	1.9	30	82	3	73	76	1	11	10	1.10
6396411--6396463	17	3.1	17	75	2	52	30	15	16	37	1.90
6396479--6396515	18	2.1	18	85	14	51	32	10	13	43	1.79
6396355--6396712	170	2.1	172	82	4	429	31	18	13	36	1.90
6396355--6396759	86	4.7	85	78	4	307	31	17	14	36	1.90
6397240--6397300	3	20.0	3	89	3	95	31	3	0	65	1.09
6397307--6397336	6	5.0	6	100	0	60	0	16	0	83	0.65
6397307--6397342	18	2.0	18	88	0	54	2	19	0	77	0.88
6397404--6397445	17	2.5	16	85	11	57	23	7	7	61	1.47
6397760--6397799	20	2.0	20	85	0	53	20	7	30	42	1.79
6399996--6400029	14	2.4	14	95	0	59	55	5	2	35	1.39
6401035--6401091	22	2.7	21	86	5	78	59	1	0	38	1.08
6401547--6401576	15	2.0	15	93	0	51	50	0	0	50	1.00
6402453--6402491	16	2.5	15	84	8	51	56	10	0	33	1.33
6411823--6411870	23	2.0	24	84	11	64	45	2	2	50	1.25
6411890--6411944	24	2.3	24	77	0	65	40	7	1	50	1.40
6411913--6411983	33	2.1	34	84	2	90	36	5	1	56	1.32
6412868--6412902	2	17.5	2	100	0	70	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6417155--6417194	21	1.9	21	90	10	64	20	0	7	72	1.08
6424395--6424495	51	2.0	51	92	0	166	27	27	21	22	1.99
6428874--6428908	18	1.9	18	94	0	61	5	22	28	42	1.76
6429537--6429795	131	2.0	131	89	1	403	38	15	8	37	1.78
6435695--6435732	12	3.0	13	76	7	51	28	0	0	71	0.87
6435693--6435731	13	3.1	13	77	7	53	33	0	0	66	0.92
6436318--6436940	155	4.0	156	96	0	1106	38	14	6	41	1.70
6436318--6436940	311	2.0	311	94	0	1104	38	14	6	41	1.70
6450663--6450688	12	2.2	12	100	0	52	34	11	30	23	1.90
6450806--6450853	24	2.0	24	88	8	71	14	18	6	60	1.55
6452019--6452073	27	2.0	28	85	3	76	29	0	10	60	1.31
6453364--6453410	6	7.8	6	90	0	76	34	2	2	61	1.20
6454371--6454404	17	1.9	18	88	5	52	58	0	2	38	1.13
6454551--6454641	37	2.5	37	79	0	101	49	12	8	29	1.70
6457957--6458130	86	2.0	86	96	0	321	33	20	13	32	1.92
6458967--6458999	13	2.4	14	85	10	50	75	0	9	15	1.03
6460881--6460944	18	3.7	17	76	16	69	34	12	15	37	1.85
6461059--6461114	17	3.2	17	80	5	67	37	16	12	33	1.86
6461056--6461111	18	3.2	18	79	5	69	41	14	12	32	1.83
6461056--6461126	35	2.0	35	88	0	106	42	14	12	30	1.82
6461307--6461388	36	2.3	36	77	12	87	30	12	12	45	1.78
6461908--6461964	23	2.5	23	83	11	64	35	1	8	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6462490--6462520	14	2.2	14	94	0	53	45	19	9	25	1.81
6462529--6462596	24	2.8	24	78	12	61	44	16	8	30	1.78
6462964--6463015	21	2.5	21	90	6	79	42	13	26	17	1.86
6463292--6463554	49	5.4	48	76	11	155	52	6	14	26	1.66
6463422--6463583	49	3.3	49	83	3	148	49	10	11	28	1.72
6463447--6463583	49	2.8	49	86	3	168	50	11	11	26	1.73
6465299--6465369	35	2.0	35	86	0	97	30	5	7	56	1.49
6471468--6471624	76	2.1	77	92	1	262	53	1	2	42	1.25
6473517--6473547	2	15.5	2	93	0	53	48	0	3	48	1.17
6476063--6476087	11	2.3	11	100	0	50	52	0	0	48	1.00
6480881--6480914	17	2.0	17	94	0	59	0	20	11	67	1.21
6481475--6481501	2	13.5	2	100	0	54	0	48	0	51	1.00
6483998--6484038	2	21.0	2	87	5	57	51	2	0	46	1.14
6484332--6484448	55	2.1	57	81	9	134	64	5	5	23	1.39
6496693--6496754	9	6.6	9	77	15	63	61	0	0	38	0.96
6496712--6496749	11	3.6	11	79	13	53	52	0	0	47	1.00
6496703--6496754	20	2.6	20	100	0	104	59	0	0	40	0.97
6496750--6496794	23	2.0	23	86	8	65	77	0	8	13	0.98
6496750--6496794	24	1.9	23	86	4	63	77	0	8	13	0.98
6496938--6496992	21	2.6	20	80	11	65	78	1	10	9	1.05
6497607--6497645	19	2.0	20	90	5	62	51	0	5	43	1.24
6497607--6497647	20	2.0	21	85	4	57	51	0	4	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6497753--6497796	19	2.3	19	88	7	63	34	0	9	56	1.31
6499508--6499567	29	2.1	29	83	0	75	48	0	8	43	1.33
6503053--6503099	2	23.0	2	82	4	58	51	6	0	42	1.27
6503301--6503339	2	20.0	2	84	5	53	48	5	0	46	1.24
6503721--6503757	2	18.5	2	94	0	65	48	0	51	0	1.00
6506867--6506906	20	2.0	21	85	5	55	37	22	7	32	1.82
6510078--6510139	24	2.6	24	82	2	63	20	1	3	74	1.05
6514313--6514357	19	2.4	19	88	0	63	31	26	17	24	1.97
6516049--6516105	30	1.9	30	92	0	96	45	15	14	24	1.83
6517183--6517233	22	2.3	22	93	0	93	31	21	13	33	1.92
6518893--6518947	27	2.1	26	83	10	67	60	0	5	34	1.20
6521853--6521904	12	4.5	12	73	26	58	67	0	1	30	1.02
6521847--6521914	16	4.0	16	75	17	66	67	0	1	30	0.99
6521998--6522030	16	2.0	17	88	5	50	66	6	0	27	1.15
6524423--6524463	21	1.9	22	85	14	59	60	2	2	34	1.23
6524655--6524724	35	2.0	35	91	0	113	52	1	8	37	1.41
6525205--6525234	2	15.0	2	100	0	60	50	0	0	50	1.00
6526051--6526079	2	14.5	2	100	0	58	51	0	48	0	1.00
6529019--6529082	6	9.8	6	82	14	74	18	0	3	78	0.89
6529005--6529090	34	2.5	35	85	11	115	20	1	4	73	1.08
6529063--6529205	42	3.6	42	75	13	124	30	1	3	65	1.18
6529189--6529280	34	2.7	34	80	11	107	18	3	2	76	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6529063--6529213	4	38.2	4	71	15	68	29	1	3	66	1.16
6529191--6529307	48	2.5	46	78	12	121	17	4	2	75	1.08
6529165--6529269	34	3.3	33	74	18	91	23	2	1	71	1.10
6530051--6530183	5	26.4	5	69	22	66	15	2	3	78	1.00
6530052--6530183	22	5.9	22	67	21	62	15	2	3	78	1.00
6530107--6530175	6	11.7	6	77	14	56	11	2	1	84	0.81
6530107--6530175	17	4.3	15	81	15	68	11	2	1	84	0.81
6530052--6530170	9	12.6	9	71	17	73	15	2	3	78	1.00
6530210--6530514	58	5.1	58	84	8	373	47	5	11	35	1.63
6530186--6530516	119	2.8	118	83	8	397	47	6	10	35	1.62
6530465--6530559	46	2.1	46	92	2	156	48	9	8	33	1.66
6530403--6530731	106	3.0	103	82	11	335	48	6	9	35	1.61
6530511--6530827	58	5.4	58	89	5	428	47	5	9	36	1.61
6530210--6530826	340	1.8	342	88	5	962	47	5	10	36	1.63
6534113--6534174	19	3.3	19	84	8	83	82	0	6	11	0.84
6534113--6534153	9	4.4	9	96	3	73	87	0	2	9	0.62
6534148--6534192	23	2.0	22	83	16	56	73	0	15	11	1.10
6535199--6535450	41	6.0	40	79	12	226	24	16	20	38	1.93
6535199--6535450	43	6.0	42	86	7	302	24	16	20	38	1.93
6535199--6535446	126	2.0	124	84	8	324	24	16	19	39	1.92
6535458--6535564	1	107.0	1	66	0	52	83	10	0	6	0.82
6535458--6535521	10	6.4	10	83	7	76	82	14	0	3	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6535468--6535564	36	2.7	35	88	6	131	82	10	0	7	0.84
6535468--6535564	9	10.6	10	83	11	95	82	10	0	7	0.84
6535464--6535564	45	2.3	43	84	5	132	83	9	0	6	0.82
6535719--6535788	9	7.3	10	78	15	51	22	0	5	71	1.07
6535746--6535782	16	2.2	18	80	14	51	27	0	2	70	1.01
6535751--6535870	41	3.0	39	75	13	118	30	0	5	64	1.21
6535806--6535938	31	4.1	31	70	19	85	24	2	4	68	1.20
6535758--6535879	47	2.5	50	75	11	119	29	0	4	65	1.16
6536753--6536879	11	11.8	10	68	15	67	18	2	3	75	1.06
6536813--6536887	11	7.2	10	82	13	73	14	2	2	80	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160