genome.fa.s334.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  10  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3001196--3001222	2	13.5	2	100	0	54	48	0	0	51	1.00
3001941--3002003	22	2.9	22	87	0	81	50	4	7	36	1.53
3005198--3005474	147	1.9	147	85	1	385	38	14	19	27	1.90
3005405--3005784	200	1.9	200	89	2	584	36	12	22	29	1.91
3007841--3008011	34	5.2	34	64	20	121	52	5	9	32	1.57
3007834--3008029	65	3.0	65	94	0	349	51	5	8	34	1.56
3007875--3007977	31	3.2	31	66	22	86	52	5	7	33	1.54
3013792--3013831	2	20.0	2	89	0	62	45	0	5	50	1.23
3016623--3016662	16	2.4	17	91	4	64	50	7	2	40	1.44
3017300--3017447	62	2.4	62	77	6	147	43	12	10	32	1.78
3017905--3018068	61	2.7	62	80	2	179	35	12	13	37	1.83
3018487--3018761	63	4.5	62	79	8	240	37	15	10	35	1.83
3018657--3018778	62	2.0	63	81	4	149	44	12	7	36	1.70
3020086--3020293	105	2.0	104	96	0	380	43	10	10	35	1.73
3028941--3029016	20	3.8	20	69	23	61	50	0	0	50	1.00
3031459--3031581	30	4.2	30	74	14	91	39	7	2	50	1.43
3031621--3031697	29	2.7	31	75	22	87	61	3	2	32	1.28
3031752--3031777	13	2.0	13	100	0	52	30	0	0	69	0.89
3033960--3034025	17	3.7	17	76	10	53	43	6	4	45	1.49
3034410--3034447	15	2.4	16	82	13	51	60	0	0	39	0.97
3034418--3034447	15	1.9	16	93	6	53	60	0	0	40	0.97
3043895--3043943	12	3.6	14	78	13	57	30	4	0	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3043894--3043945	14	3.8	14	74	5	52	32	3	0	63	1.12
3046076--3046116	18	2.2	19	91	4	66	65	0	0	34	0.93
3046174--3046198	13	1.9	13	100	0	50	52	0	0	48	1.00
3074654--3074678	2	12.5	2	100	0	50	48	0	0	52	1.00
3078544--3078576	12	2.8	12	95	0	57	21	9	12	57	1.62
3078841--3078871	3	10.3	3	100	0	62	67	0	0	32	0.91
3083369--3083458	28	3.1	28	73	17	78	32	2	3	62	1.24
3083378--3083460	29	2.9	28	78	8	80	34	1	3	60	1.22
3088102--3088157	17	3.1	17	73	16	51	57	1	0	41	1.09
3088207--3088383	31	5.6	31	73	18	143	42	2	1	53	1.23
3088209--3088444	18	14.6	17	68	24	79	41	1	2	54	1.22
3088216--3088417	92	2.2	91	84	8	270	43	1	1	52	1.23
3104215--3104272	25	2.2	27	84	6	75	25	10	1	62	1.37
3105072--3105245	87	2.0	86	88	3	260	38	0	5	55	1.24
3105126--3105262	29	4.7	28	68	18	84	40	1	3	54	1.27
3109518--3109546	3	10.0	3	92	7	51	0	0	34	65	0.93
3114073--3114116	23	1.9	23	95	0	79	31	6	2	59	1.36
3116995--3117047	22	2.4	22	84	9	72	37	5	0	56	1.23
3117038--3117080	19	2.3	18	81	18	61	23	0	4	72	1.04
3117167--3117209	15	2.9	14	89	6	59	34	0	2	62	1.08
3117235--3117291	12	4.8	12	73	4	53	43	0	3	52	1.18
3117249--3117296	23	2.1	23	88	0	69	43	0	4	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3119488--3119530	15	2.8	16	78	7	52	65	0	0	34	0.93
3136002--3136056	20	2.8	19	74	15	51	47	1	7	43	1.41
3136264--3136294	12	2.7	12	95	5	55	19	0	3	77	0.90
3143739--3143763	8	3.1	8	100	0	50	76	0	0	24	0.80
3147316--3147370	20	2.8	19	74	15	51	47	1	7	43	1.41
3147574--3147606	13	2.6	13	95	4	59	18	0	3	78	0.87
3162678--3162717	21	1.9	21	89	0	62	17	15	15	52	1.75
3172837--3172881	18	2.5	17	79	10	54	48	2	2	46	1.26
3173219--3173260	21	2.0	21	95	0	75	50	9	7	33	1.62
3200054--3200098	21	2.1	22	84	12	58	40	0	2	57	1.11
3200085--3200141	27	2.2	26	81	12	64	61	0	5	33	1.18
3200763--3200790	2	14.0	2	100	0	56	50	0	0	50	1.00
3218300--3218344	15	2.8	16	80	6	56	84	6	0	8	0.78
3218299--3218346	8	6.1	8	79	11	55	83	6	0	10	0.81
3220438--3220479	3	14.0	3	100	0	84	33	0	0	66	0.92
3220478--3220512	3	11.7	3	93	0	61	31	34	0	34	1.58
3221471--3221515	10	4.9	9	79	15	56	20	2	2	75	1.01
3225433--3225460	14	2.0	14	100	0	56	35	7	28	28	1.84
3226457--3226495	15	2.5	16	87	4	53	64	0	0	35	0.94
3226509--3226545	16	2.3	16	90	0	56	75	8	0	16	1.02
3227630--3227669	20	2.0	21	90	5	64	70	5	0	25	1.08
3227855--3227895	21	1.9	22	85	5	57	60	0	4	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3228643--3228687	22	2.0	22	87	8	65	77	6	2	13	1.05
3239611--3240429	47	16.9	48	75	9	570	30	11	19	38	1.87
3239608--3240413	143	5.6	145	75	11	573	30	11	19	38	1.87
3241734--3241773	20	2.0	21	90	5	64	70	5	0	25	1.08
3249569--3249750	30	6.1	30	79	14	89	42	4	1	52	1.28
3249593--3249750	30	5.3	30	84	6	203	43	3	1	51	1.27
3250376--3250406	2	15.5	2	100	0	62	48	0	51	0	1.00
3251540--3251588	18	2.7	18	74	0	53	44	0	2	53	1.12
3268128--3268166	2	19.5	2	89	10	62	48	0	2	48	1.15
3273437--3273465	15	1.9	15	100	0	58	55	3	13	27	1.55
3274196--3274227	3	10.7	3	100	0	64	65	0	34	0	0.93
3275101--3275155	24	2.3	24	87	3	76	36	3	1	58	1.26
3276266--3276299	7	4.7	7	88	3	50	88	0	8	2	0.62
3276890--3276922	2	16.5	2	100	0	66	51	0	0	48	1.00
3288437--3288468	14	2.3	14	94	0	55	56	0	3	40	1.15
3288585--3288656	27	2.8	26	83	8	85	51	0	1	47	1.09
3288624--3288706	16	5.1	17	72	18	70	51	0	0	48	1.00
3288627--3288693	36	1.9	34	85	11	91	53	0	0	46	1.00
3288747--3288857	15	7.3	15	73	17	79	40	0	2	55	1.20
3288764--3288863	22	4.3	23	77	12	78	41	1	2	56	1.18
3288749--3288859	27	4.2	26	71	23	81	41	0	2	54	1.20
3288778--3288860	27	3.2	26	75	8	87	40	1	1	56	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3288835--3288872	18	2.1	18	90	0	58	50	0	2	47	1.15
3289590--3289618	2	14.5	2	100	0	58	48	0	0	51	1.00
3295295--3295338	19	2.2	21	84	8	56	2	9	2	86	0.75
3303223--3303271	24	2.0	24	100	0	98	40	12	0	46	1.41
3307193--3307225	14	2.2	16	89	10	52	39	0	0	60	0.97
3310292--3310390	49	2.0	49	92	0	162	33	8	20	38	1.82
3314453--3314483	2	16.0	2	93	6	55	48	0	0	51	1.00
3315074--3315148	7	11.7	7	67	27	51	52	0	0	48	1.00
3315077--3315144	20	3.6	20	77	14	74	51	0	0	48	1.00
3315104--3315156	25	2.2	25	80	19	67	50	0	0	49	1.00
3315074--3315144	18	3.8	19	78	14	85	50	0	0	49	1.00
3324245--3324293	25	2.0	24	92	4	80	48	2	0	48	1.12
3324247--3324307	25	2.4	25	83	10	70	49	4	0	45	1.23
3332430--3332481	23	2.3	23	83	16	72	28	1	0	69	0.99
3332442--3332482	12	3.5	12	75	18	50	29	0	0	70	0.87
3334612--3334645	17	2.0	17	100	0	68	41	23	0	35	1.55
3346826--3346858	12	2.8	12	90	4	50	90	0	9	0	0.44
3354064--3354141	21	3.6	20	74	20	68	38	0	3	57	1.17
3354076--3354140	23	2.8	23	75	13	62	35	0	4	60	1.18
3354064--3354142	22	3.6	21	75	23	74	37	0	3	58	1.16
3363557--3363610	3	18.3	3	86	3	74	74	0	0	25	0.83
3364533--3364599	26	2.6	24	73	15	71	47	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3365747--3365798	26	2.0	26	100	0	104	26	3	7	61	1.41
3369538--3369563	2	13.0	2	100	0	52	50	50	0	0	1.00
3371163--3371201	2	19.5	2	100	0	78	48	0	0	51	1.00
3372041--3372074	12	2.8	12	90	4	50	44	2	0	52	1.16
3372318--3372356	20	1.9	20	89	5	60	64	0	0	35	0.94
3374586--3374671	30	2.9	29	80	3	100	47	3	12	36	1.59
3374605--3374698	30	3.2	29	78	13	86	47	2	8	41	1.46
3374620--3374709	29	3.1	27	78	10	81	54	1	5	38	1.31
3377068--3377098	2	15.5	2	93	0	53	45	0	0	54	0.99
3380922--3380976	26	2.1	26	89	0	83	36	9	0	54	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160