genome.fa.s334.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  52  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11152684--11152724	19	2.1	20	86	4	57	29	4	4	60	1.38
11152847--11152909	3	21.0	3	100	0	126	33	33	0	33	1.58
11153130--11153291	84	2.0	82	92	4	272	31	12	17	37	1.88
11153423--11153494	4	18.0	4	91	0	81	55	2	1	40	1.23
11154754--11155021	124	2.2	124	84	1	358	29	22	13	35	1.92
11155057--11155107	20	2.5	20	100	0	102	37	25	17	19	1.94
11155806--11155847	15	2.8	16	82	13	54	33	7	14	45	1.72
11159094--11159205	47	2.4	47	81	0	116	40	17	10	31	1.84
11159079--11159251	94	1.8	94	80	2	204	39	16	10	32	1.84
11159237--11159352	47	2.5	47	83	5	146	37	22	13	26	1.92
11159282--11159395	47	2.4	47	83	0	129	37	19	15	27	1.92
11159659--11159715	30	1.9	30	85	7	80	33	19	14	33	1.91
11159799--11159873	29	2.6	29	76	2	78	29	22	12	36	1.90
11160399--11160457	30	2.0	29	86	3	82	30	11	15	42	1.83
11160401--11160464	29	2.2	30	82	2	76	31	15	17	35	1.91
11160501--11160575	30	2.6	28	74	12	71	40	21	9	29	1.84
11160619--11160680	30	2.1	30	84	0	79	43	16	8	32	1.77
11160635--11161073	30	14.7	30	70	7	124	35	22	10	32	1.87
11161630--11161834	31	6.6	31	70	6	101	39	18	8	33	1.82
11161709--11161770	15	4.1	15	77	4	61	41	19	4	33	1.72
11163758--11165116	162	8.5	160	74	10	878	42	15	9	32	1.78
11163758--11165114	324	4.2	318	78	7	1059	42	15	9	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11163758--11165144	485	2.9	476	80	5	1387	43	14	9	32	1.78
11165539--11165596	29	2.0	29	96	0	107	43	10	22	24	1.84
11166329--11166361	13	2.5	13	90	0	57	57	9	6	27	1.53
11168585--11168630	21	2.2	21	84	0	56	36	21	10	30	1.88
11169302--11169349	24	2.0	24	91	0	78	39	14	22	22	1.91
11170765--11170836	20	3.3	20	68	17	63	43	5	13	37	1.68
11171140--11171193	25	2.2	25	83	6	65	42	0	11	46	1.39
11171489--11171652	83	2.0	83	91	0	265	43	10	12	32	1.78
11172990--11173040	25	2.0	25	85	7	68	50	9	1	37	1.47
11184876--11185105	39	5.9	39	78	6	207	24	13	17	43	1.86
11185132--11185324	80	2.4	79	81	5	212	26	12	15	45	1.81
11185036--11185221	98	1.9	97	81	2	221	24	12	16	47	1.80
11185135--11185324	39	4.8	39	79	9	206	26	12	14	46	1.80
11184998--11185271	137	2.0	139	80	8	310	25	12	16	45	1.82
11184961--11185288	178	1.8	177	82	5	421	25	11	17	45	1.82
11185703--11186080	39	9.6	39	79	6	332	26	12	15	45	1.82
11185703--11186048	79	4.4	78	79	5	349	27	12	14	45	1.80
11185703--11186048	158	2.2	156	82	5	410	27	12	14	45	1.80
11186275--11186319	15	3.0	15	86	0	54	37	31	17	13	1.89
11186443--11186511	4	17.2	4	81	0	84	21	5	2	69	1.23
11186542--11186599	21	2.7	21	89	5	80	25	8	0	65	1.21
11190280--11190330	2	25.5	2	100	0	102	0	50	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11190844--11190923	40	2.0	40	90	0	124	21	13	7	57	1.61
11193558--11193591	16	2.1	17	88	5	52	67	2	0	29	1.05
11198678--11198771	42	2.2	42	84	0	134	29	18	25	26	1.98
11202605--11202644	10	3.9	10	83	6	53	12	2	17	67	1.33
11203125--11203183	22	2.7	23	79	10	61	38	8	1	50	1.43
11203186--11203439	60	4.3	60	80	10	299	48	6	9	35	1.62
11203276--11203474	60	3.4	56	85	4	168	49	6	11	33	1.63
11204542--11204572	15	2.0	16	93	6	55	12	16	0	70	1.16
11206954--11206999	13	3.5	13	80	11	58	80	0	13	6	0.89
11207377--11207430	24	2.2	25	86	3	74	68	0	25	5	1.11
11208669--11208912	17	14.2	17	67	5	62	29	18	12	39	1.87
11208658--11208861	103	2.0	103	86	1	284	30	17	11	40	1.85
11208669--11208880	34	6.2	34	73	3	129	29	17	12	40	1.86
11209108--11209304	85	2.3	85	81	6	229	23	20	13	42	1.88
11210601--11210983	58	6.5	58	82	5	419	47	6	10	36	1.62
11210601--11211019	60	7.2	58	77	10	259	47	6	10	35	1.64
11211341--11211412	36	2.0	36	97	0	135	26	25	15	33	1.95
11216738--11216788	22	2.5	20	87	12	68	50	0	0	49	1.00
11226123--11226162	20	2.1	19	86	9	55	72	0	0	27	0.85
11226143--11226184	15	2.7	16	92	3	68	61	0	0	38	0.96
11226229--11226261	17	1.9	17	93	0	57	63	3	0	33	1.10
11226248--11226288	20	2.0	20	90	0	64	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11226231--11226289	19	3.3	18	74	6	57	50	1	1	45	1.21
11226231--11226288	18	3.2	18	75	4	62	50	1	1	46	1.22
11226411--11226495	9	9.8	8	75	17	64	27	1	3	68	1.13
11226411--11226514	18	5.8	19	72	15	78	28	1	2	66	1.17
11226458--11226486	15	1.9	15	100	0	58	27	0	3	68	1.05
11226449--11226495	25	1.9	24	86	4	67	27	0	2	70	0.99
11226429--11226517	19	4.4	19	76	15	72	31	2	1	65	1.12
11226409--11226520	9	12.4	9	70	12	61	29	1	2	66	1.16
11226501--11226531	16	1.9	16	93	0	53	32	3	0	64	1.09
11226509--11226555	24	2.1	23	85	14	64	25	0	4	70	1.05
11226889--11226920	12	2.7	12	95	0	55	50	9	0	40	1.35
11227562--11227613	7	7.1	7	89	8	68	73	9	0	17	1.09
11227576--11227613	14	2.7	14	100	0	76	73	13	0	13	1.09
11228628--11228698	6	11.7	6	75	3	70	64	8	1	25	1.30
11228628--11228696	12	5.7	12	82	3	84	66	8	1	23	1.27
11229120--11229305	18	10.4	18	71	10	73	43	11	10	34	1.75
11229303--11229358	17	3.2	17	85	7	69	35	8	14	41	1.77
11229329--11229426	17	5.8	17	74	11	58	35	15	13	35	1.86
11229337--11229426	34	2.6	34	78	0	99	35	14	13	36	1.85
11229454--11229529	33	2.3	33	84	2	91	43	7	9	39	1.66
11229491--11229566	16	4.7	16	73	3	62	42	9	10	38	1.71
11229478--11229589	49	2.3	48	84	4	143	41	8	11	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11229812--11229873	24	2.7	22	78	9	70	41	12	6	38	1.69
11231384--11231427	19	2.2	20	84	4	54	11	9	0	79	0.93
11231384--11231427	20	2.2	20	84	8	54	11	9	0	79	0.93
11237080--11237111	15	2.1	16	94	5	57	12	15	6	65	1.44
11237128--11237217	6	15.0	6	73	0	63	62	10	3	24	1.42
11237145--11237185	18	2.3	18	95	0	73	68	7	0	24	1.15
11237122--11237212	30	3.0	30	91	0	137	63	12	3	20	1.42
11242567--11242617	2	26.0	2	92	4	86	49	0	1	49	1.12
11247810--11247913	12	9.2	12	75	11	103	23	9	25	41	1.84
11247816--11247914	4	25.0	4	81	2	92	23	9	25	42	1.83
11249739--11249764	2	13.0	2	100	0	52	50	0	0	50	1.00
11258046--11258070	13	1.9	13	100	0	50	52	0	0	48	1.00
11265066--11265094	2	14.5	2	100	0	58	51	0	0	48	1.00
11270872--11270906	16	2.2	16	100	0	70	51	17	8	22	1.72
11275917--11276070	79	1.9	80	89	1	238	35	19	12	33	1.89
11283517--11283562	24	1.9	24	81	0	56	19	8	0	71	1.11
11284451--11284499	19	2.5	19	96	3	89	20	4	0	75	0.96
11285399--11285445	7	6.9	7	78	11	53	12	4	0	82	0.80
11285399--11285450	26	2.0	27	92	3	88	15	3	0	80	0.85
11285398--11285450	27	2.0	27	92	7	90	15	3	0	81	0.83
11289447--11289492	18	2.5	19	75	10	51	8	8	6	76	1.17
11292055--11292111	14	4.2	13	85	14	80	75	7	1	15	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11292055--11292132	21	3.8	20	71	20	63	76	5	2	15	1.06
11292055--11292127	13	5.2	14	81	18	82	75	5	2	16	1.11
11292061--11292115	6	8.3	6	80	11	56	76	5	1	16	1.06
11292055--11292127	28	2.6	29	85	10	82	75	5	2	16	1.11
11292955--11293027	13	5.5	13	88	9	112	58	0	2	38	1.12
11292944--11293036	5	18.6	5	76	17	79	59	0	2	38	1.10
11293054--11293113	17	3.6	17	76	13	70	68	8	0	23	1.16
11293063--11293113	11	4.6	11	75	18	52	68	7	0	23	1.15
11292930--11293111	3	64.7	3	70	19	99	61	4	1	32	1.25
11307883--11307988	54	2.0	53	90	1	167	21	15	22	40	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160