genome.fa.s334.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  37  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9020513--9020572	31	2.0	30	86	3	84	40	3	8	48	1.50
9025273--9025303	3	10.3	3	100	0	62	64	0	0	35	0.94
9027041--9027082	1	42.0	1	100	0	84	0	0	0	100	0.00
9028503--9028549	24	2.0	24	91	0	76	27	10	14	46	1.78
9029927--9029984	10	5.6	10	74	8	53	68	5	0	25	1.10
9029941--9029990	16	3.1	16	72	11	57	64	6	0	30	1.18
9029927--9029990	32	2.0	32	100	0	128	65	6	0	28	1.16
9029998--9030088	20	4.6	20	84	9	98	47	12	7	32	1.69
9029998--9030088	41	2.3	40	83	7	105	47	12	7	32	1.69
9030616--9030673	20	3.0	19	78	14	57	62	20	0	17	1.33
9031219--9031276	16	3.7	15	73	15	55	6	6	6	79	1.06
9031242--9031290	14	3.3	15	83	13	57	10	4	10	75	1.17
9031258--9031292	7	5.0	7	96	0	61	14	2	14	68	1.32
9031335--9031370	5	7.0	5	90	6	54	77	2	0	19	0.88
9031774--9032016	17	14.5	17	75	11	139	35	13	16	34	1.88
9031762--9032016	34	7.6	34	73	11	168	34	13	16	35	1.88
9031762--9032049	84	3.4	83	87	2	355	35	12	16	35	1.87
9031792--9032022	50	4.6	51	75	7	204	35	12	16	35	1.88
9031791--9032055	34	7.9	34	76	4	216	35	12	16	35	1.87
9031808--9032068	17	15.6	17	75	8	151	36	12	16	35	1.86
9031766--9032084	50	6.3	50	73	7	155	35	11	16	35	1.86
9032118--9032174	21	2.7	22	78	8	64	50	17	1	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9032350--9032476	46	2.8	45	81	4	146	39	14	8	37	1.78
9032443--9032510	24	3.0	21	74	15	64	45	11	2	39	1.56
9045229--9045284	3	18.7	3	96	0	103	30	0	1	67	1.01
9046863--9046891	9	3.3	9	90	9	51	10	0	0	89	0.48
9046937--9046983	20	2.6	18	78	18	53	8	27	0	63	1.23
9048776--9048877	48	2.1	48	83	1	132	38	14	12	34	1.85
9048987--9049161	51	3.2	56	78	9	184	34	16	12	37	1.86
9049186--9049239	22	2.5	22	84	0	72	25	18	25	29	1.98
9049305--9049363	22	2.7	22	78	0	64	28	11	23	35	1.91
9049144--9049454	126	2.5	125	79	6	324	32	14	18	35	1.90
9049537--9049599	22	2.9	22	80	0	72	36	11	17	34	1.85
9049229--9049657	230	1.9	230	84	3	587	34	12	15	37	1.86
9049465--9049788	126	2.6	126	86	3	422	35	12	13	38	1.82
9049199--9049685	230	2.1	230	80	5	581	33	13	16	36	1.87
9049729--9049870	71	2.0	71	84	5	189	33	12	16	38	1.86
9050838--9050868	13	2.4	13	94	0	53	9	6	0	83	0.79
9056119--9056161	21	2.0	23	86	9	63	44	4	13	37	1.65
9058599--9058647	22	2.2	22	85	7	64	2	20	0	77	0.87
9058596--9058650	28	2.0	28	89	7	85	3	20	0	76	0.94
9059630--9059661	3	10.7	3	100	0	64	31	0	0	68	0.90
9060153--9060211	31	1.9	31	82	6	75	30	22	20	27	1.98
9060653--9060691	8	5.4	8	80	20	50	12	0	7	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9060644--9060685	13	3.3	13	86	3	59	11	2	7	78	1.04
9060772--9061295	60	8.7	59	87	9	715	45	7	12	33	1.71
9060772--9061295	118	4.4	117	90	6	772	45	7	12	33	1.71
9064383--9064435	11	4.7	11	75	13	54	84	1	3	9	0.81
9064399--9064509	9	13.2	8	81	14	111	73	0	14	11	1.09
9065521--9066419	41	21.9	40	87	6	1188	22	18	21	37	1.94
9065521--9066419	286	3.1	286	94	2	1488	22	18	21	37	1.94
9066427--9066549	28	4.3	28	85	12	171	86	12	0	0	0.60
9066428--9066550	1	123.0	1	75	0	111	87	11	0	0	0.58
9066428--9066550	21	6.2	20	86	11	150	87	11	0	0	0.58
9066430--9066579	14	10.8	13	82	11	149	85	10	0	4	0.73
9066763--9066800	3	13.0	3	84	15	53	28	0	2	68	1.03
9067379--9067437	31	1.9	31	82	6	75	28	20	22	28	1.98
9067878--9067904	8	3.4	8	100	0	54	11	0	11	77	0.99
9067860--9067919	16	3.8	16	75	16	54	13	1	5	80	0.96
9067998--9068639	60	10.7	59	86	10	880	45	7	12	33	1.72
9070418--9070482	31	2.1	31	97	0	121	41	9	16	32	1.80
9071712--9071737	2	13.0	2	100	0	52	50	0	0	50	1.00
9072058--9072083	12	2.2	12	100	0	52	0	7	7	84	0.77
9074592--9074665	11	6.5	11	74	20	55	70	0	1	28	0.96
9074552--9074636	26	3.2	26	71	17	68	56	0	0	43	0.99
9074613--9074665	10	5.2	10	80	13	63	73	0	1	24	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9074625--9074665	16	2.6	16	84	3	57	75	0	2	21	0.92
9082767--9082801	2	17.5	2	100	0	70	48	0	0	51	1.00
9083575--9084160	296	2.0	290	96	2	1091	34	9	10	45	1.71
9084166--9084225	18	3.2	18	76	6	57	21	5	1	71	1.14
9085209--9085235	12	2.2	12	100	0	54	0	7	7	85	0.75
9087439--9087473	2	17.5	2	93	0	61	54	0	0	45	0.99
9096366--9096481	38	3.1	38	98	0	223	26	7	12	53	1.65
9096840--9096877	2	19.0	2	100	0	76	50	0	0	50	1.00
9097365--9097393	1	29.0	1	100	0	58	0	100	0	0	0.00
9101406--9101444	21	1.9	20	89	5	60	53	2	2	41	1.28
9104578--9104641	21	3.2	20	80	10	69	51	18	4	25	1.65
9104598--9104650	21	2.5	21	81	0	61	49	18	3	28	1.65
9105423--9105464	14	2.9	15	75	7	50	21	0	9	69	1.17
9105445--9105567	29	4.1	29	68	13	88	35	0	5	57	1.28
9109248--9109599	144	2.5	144	82	1	422	31	13	13	42	1.82
9110214--9110254	16	2.5	17	81	18	59	73	4	12	9	1.24
9111869--9111905	3	12.3	3	100	0	74	32	0	0	67	0.91
9115138--9115356	59	3.7	58	86	8	302	34	15	7	42	1.75
9115138--9115373	60	3.9	59	87	5	316	33	15	7	42	1.76
9115317--9115411	41	2.3	40	85	8	131	32	14	5	47	1.67
9115257--9115471	99	2.1	99	86	7	301	33	15	6	45	1.72
9115367--9115642	60	4.6	59	85	4	349	33	14	7	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9115367--9115642	119	2.3	120	91	1	439	33	14	7	44	1.74
9115148--9115578	218	2.0	217	90	4	688	32	15	6	44	1.74
9115663--9115745	6	13.5	6	72	17	64	78	1	6	14	1.00
9115663--9115738	30	2.4	30	84	8	89	78	1	5	14	0.98
9115769--9115802	4	8.5	4	100	0	68	76	0	0	23	0.79
9116642--9116681	18	2.2	18	86	0	53	67	5	12	15	1.38
9117101--9117141	8	4.9	8	88	8	55	4	0	9	85	0.73
9117093--9117150	17	3.2	19	80	11	61	5	0	10	84	0.77
9117093--9117141	25	2.0	25	84	8	64	6	0	8	85	0.73
9117094--9117140	16	2.9	15	81	12	58	6	0	8	85	0.75
9117162--9117713	81	6.8	81	93	4	922	37	21	18	22	1.94
9117162--9117713	40	13.7	39	89	8	804	37	21	18	22	1.94
9122858--9123489	60	10.7	59	85	6	831	34	14	7	43	1.74
9122845--9123488	118	5.5	117	86	7	835	34	14	7	43	1.74
9123515--9123562	16	3.1	15	82	8	60	79	2	4	14	0.98
9123525--9123590	12	5.5	11	82	10	69	80	3	3	13	0.95
9123525--9123590	24	2.8	23	80	19	82	80	3	3	13	0.95
9123621--9123654	4	8.5	4	100	0	68	76	0	0	23	0.79
9124140--9124191	11	4.5	11	77	15	52	46	17	1	34	1.59
9124143--9124195	25	2.2	24	89	3	79	39	18	1	39	1.62
9124590--9124642	23	2.3	24	79	20	60	58	5	0	35	1.22
9124802--9124842	20	2.0	21	90	4	66	14	24	34	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9127326--9127363	16	2.5	15	87	12	51	23	5	0	71	1.07
9127493--9127587	16	5.8	16	73	8	75	20	2	29	48	1.61
9129031--9129073	13	3.2	13	87	6	59	2	16	2	79	0.95
9129031--9129074	14	3.2	14	83	3	54	2	15	2	79	0.93
9129112--9129143	14	2.2	15	94	5	57	34	3	0	62	1.11
9129139--9129167	15	1.9	15	100	0	58	44	0	6	48	1.29
9129117--9129145	3	10.0	3	92	7	51	34	0	0	65	0.93
9131477--9131518	20	2.0	22	86	9	61	80	11	2	4	0.95
9131538--9131749	70	3.0	71	77	6	198	41	17	11	29	1.85
9132436--9132476	9	4.4	9	81	6	55	85	4	9	0	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160