genome.fa.s334.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  98  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18490135--18490233	50	2.0	51	90	6	157	45	5	4	45	1.44
18490254--18490378	53	2.4	52	88	5	184	45	8	3	43	1.49
18490801--18490873	35	2.0	35	82	10	85	53	5	2	38	1.39
18495460--18495518	26	2.3	26	100	0	118	40	6	10	42	1.65
18503389--18503427	21	2.0	20	85	10	53	20	0	12	66	1.24
18503708--18503740	14	2.3	14	94	5	57	9	0	12	78	0.95
18503708--18503752	15	3.0	15	87	6	65	8	2	13	75	1.13
18503896--18503938	19	2.3	19	95	0	77	11	6	32	48	1.66
18504524--18504590	23	3.0	21	75	16	62	37	2	5	53	1.41
18509702--18509996	138	2.1	138	99	0	581	46	13	7	32	1.71
18509961--18510003	18	2.5	17	88	7	61	46	11	6	34	1.67
18509925--18510008	16	4.7	17	70	16	55	48	11	4	34	1.61
18510070--18510268	32	6.7	30	67	20	107	53	10	5	31	1.57
18510027--18510233	88	2.3	91	85	5	269	55	10	3	29	1.52
18510150--18510268	56	2.1	57	81	4	152	52	9	5	33	1.55
18510027--18510268	88	2.7	88	80	6	256	54	10	4	30	1.53
18515676--18515714	17	2.3	17	86	8	53	43	7	7	41	1.62
18515871--18515950	22	3.6	22	84	0	88	43	7	8	40	1.64
18526705--18526751	25	1.9	24	83	12	60	51	0	8	40	1.33
18537170--18537623	239	1.9	241	86	1	653	36	13	11	38	1.81
18541886--18541926	3	13.3	3	94	5	73	34	0	0	65	0.93
18541925--18541958	3	11.3	3	93	0	59	32	29	0	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18542091--18542124	18	1.9	17	88	5	50	17	2	5	73	1.16
18542275--18542407	4	33.2	4	77	3	70	39	6	9	44	1.62
18542300--18542390	26	3.4	26	74	6	85	36	3	13	47	1.59
18542386--18542412	14	1.9	14	100	0	54	44	18	0	37	1.50
18542446--18542550	39	2.6	39	80	4	102	42	25	13	18	1.86
18543875--18543910	3	12.3	3	88	5	56	33	27	0	38	1.57
18543877--18543937	6	10.3	6	92	1	52	34	14	0	50	1.43
18543909--18543941	3	11.0	3	100	0	66	33	0	0	66	0.92
18546785--18546819	13	2.7	13	100	0	70	31	11	25	31	1.91
18555617--18555682	28	2.4	28	92	0	114	22	10	9	57	1.60
18556962--18556999	18	2.1	18	100	0	76	36	15	5	42	1.70
18558116--18558208	31	3.0	31	76	6	107	25	7	29	37	1.83
18560542--18560576	17	2.1	17	100	0	70	22	17	17	42	1.88
18566129--18566388	51	4.9	50	73	12	191	28	13	18	39	1.88
18566230--18566345	58	2.0	58	88	3	171	26	12	16	44	1.82
18566178--18566389	109	1.9	109	81	3	257	28	12	18	40	1.87
18566687--18566755	23	3.0	24	77	16	65	39	23	17	20	1.92
18567873--18568721	280	3.0	279	90	1	1306	23	17	19	40	1.91
18571815--18571844	14	2.1	14	93	6	51	73	0	13	13	1.10
18576536--18576835	149	2.0	150	96	0	557	28	20	15	36	1.93
18587791--18587819	8	3.8	8	95	4	51	6	27	10	55	1.59
18596300--18596633	50	6.4	50	77	10	289	31	15	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18596303--18596513	101	2.1	100	87	6	311	31	15	18	34	1.92
18599413--18599453	9	4.6	9	84	0	55	68	12	0	19	1.21
18603390--18603546	85	1.8	85	84	2	217	19	15	24	40	1.91
18603429--18603585	85	1.8	85	81	5	192	21	15	23	40	1.91
18605878--18605902	13	1.9	13	100	0	50	80	0	0	20	0.72
18606211--18606296	42	2.1	41	84	2	109	34	20	17	26	1.95
18606792--18607066	21	12.3	21	70	18	83	38	12	9	39	1.76
18606820--18606990	21	7.5	23	73	16	117	36	14	9	39	1.79
18606820--18606988	46	3.7	46	90	0	266	35	14	10	40	1.79
18606820--18606988	92	1.8	92	93	0	293	35	14	10	40	1.79
18607459--18607634	63	2.8	63	85	1	237	23	26	13	35	1.92
18608366--18608431	17	3.8	17	78	13	71	6	19	0	74	1.03
18608364--18608424	16	3.6	16	79	12	68	6	21	0	72	1.07
18608404--18608436	11	2.8	12	90	9	50	6	12	0	81	0.85
18614967--18615012	22	2.1	22	91	0	74	69	4	4	21	1.24
18618056--18618164	57	1.9	57	90	3	175	44	11	4	39	1.60
18626171--18626230	26	2.4	24	79	17	68	36	8	5	50	1.55
18626651--18626691	13	3.2	13	83	13	57	4	0	39	56	1.21
18626658--18626718	32	1.9	32	82	0	77	13	0	39	47	1.42
18626690--18626774	38	2.2	38	83	8	102	22	1	32	43	1.61
18626702--18626780	19	4.1	20	68	15	67	26	1	30	41	1.64
18627720--18627751	11	2.8	11	95	4	55	87	9	0	3	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18631897--18632021	3	42.3	3	85	9	168	33	0	2	63	1.13
18632508--18632545	19	2.0	19	89	0	58	34	7	13	44	1.72
18632894--18632984	12	7.2	12	74	16	60	21	3	1	73	1.04
18632893--18632985	25	3.6	27	80	12	90	23	3	1	72	1.06
18632901--18632984	13	6.7	12	72	14	62	22	2	1	73	1.01
18632901--18632964	8	7.3	9	76	11	62	20	3	1	75	1.03
18636347--18636733	196	2.0	196	97	0	729	32	22	13	32	1.92
18637522--18637559	15	2.5	15	95	4	67	86	5	7	0	0.69
18639629--18639743	3	39.3	3	74	17	91	36	0	4	58	1.24
18639683--18639715	13	2.4	14	90	5	50	33	3	6	57	1.38
18640313--18640418	51	2.1	50	81	8	117	24	14	18	42	1.88
18640597--18640671	6	12.3	6	71	12	55	20	2	1	76	0.99
18640604--18640683	23	3.4	23	82	12	92	21	3	1	73	1.06
18640596--18640691	41	2.3	41	82	8	106	22	3	1	72	1.04
18640621--18640691	18	3.9	17	73	15	63	23	2	1	71	1.07
18645395--18645482	32	2.7	31	77	10	88	39	15	18	26	1.90
18648447--18648566	63	1.9	63	84	3	161	40	17	13	28	1.87
18648516--18648745	76	3.0	76	89	1	363	34	23	11	30	1.90
18652183--18652231	22	2.2	22	85	7	64	59	10	8	22	1.56
18653299--18653417	46	2.7	46	81	6	129	39	17	12	30	1.87
18660167--18660205	17	2.2	18	86	13	55	79	2	2	15	0.95
18661274--18661316	12	3.5	12	78	15	52	72	11	2	13	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18661276--18661324	25	2.0	24	88	8	71	73	8	6	12	1.24
18663243--18663267	8	3.1	8	100	0	50	12	12	0	76	1.04
18676191--18676230	21	1.9	21	89	0	62	25	2	2	70	1.13
18684394--18684457	32	2.0	32	100	0	128	34	9	21	34	1.86
18686748--18687098	43	8.1	43	75	5	262	27	12	17	42	1.86
18686748--18686943	85	2.3	86	84	6	245	26	13	16	43	1.85
18686993--18687122	44	3.0	42	73	14	113	25	10	19	44	1.83
18688354--18688378	7	3.6	7	100	0	50	76	0	0	24	0.80
18688714--18688828	46	2.4	49	81	11	139	56	9	13	20	1.64
18690879--18690918	16	2.4	17	83	4	55	30	17	2	50	1.59
18692500--18692538	20	1.9	21	89	5	62	61	0	0	38	0.96
18699880--18699920	19	2.2	19	86	8	57	78	7	7	7	1.11
18700688--18700716	2	14.5	2	100	0	58	48	0	0	51	1.00
18702506--18702989	141	3.4	142	81	9	540	33	15	9	40	1.80
18702446--18702989	143	3.8	144	80	8	574	34	15	9	39	1.80
18703382--18703436	21	2.6	21	80	8	58	63	10	18	7	1.49
18712807--18712912	44	2.4	44	79	0	113	33	20	20	25	1.97
18712807--18712919	22	5.1	22	78	4	102	33	19	20	26	1.96
18713086--18713744	34	19.4	34	68	14	161	33	20	12	33	1.90
18713239--18713537	69	4.4	68	71	11	218	33	21	14	31	1.93
18713554--18713747	69	2.8	69	79	6	171	34	20	11	34	1.88
18713814--18713886	34	2.1	34	89	0	110	36	16	9	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18713730--18714045	136	2.3	135	77	6	334	35	17	13	34	1.89
18713826--18713912	34	2.5	34	81	1	102	40	10	11	37	1.76
18713200--18714051	68	12.5	68	70	10	278	33	19	13	33	1.91
18714721--18715072	127	2.8	126	82	3	402	35	17	11	35	1.86
18715151--18715289	37	3.6	36	78	14	136	26	13	21	38	1.91
18715174--18715291	41	3.0	40	76	16	129	28	13	20	37	1.91
18716774--18716811	19	2.0	19	94	0	67	81	0	18	0	0.69
18716721--18716857	70	2.0	69	89	4	213	67	5	21	5	1.31
18722839--18722886	19	2.6	19	87	12	73	47	0	0	52	1.00
18722842--18722886	20	2.3	20	92	3	74	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160