genome.fa.s334.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  19  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5378888--5378985	50	2.0	50	86	8	137	3	0	10	86	0.67
5378887--5378965	8	9.8	8	90	8	124	0	0	12	87	0.55
5378897--5378987	24	4.0	23	84	8	114	3	0	8	87	0.63
5378994--5379404	42	10.0	40	88	10	575	37	21	18	21	1.94
5378994--5379384	82	4.7	82	90	7	614	37	22	18	21	1.94
5380629--5380667	9	4.7	9	90	9	57	10	7	0	82	0.86
5380629--5380668	8	4.9	8	90	6	62	10	10	0	80	0.92
5380627--5380699	15	4.7	15	75	21	62	5	13	0	80	0.87
5380627--5380698	8	9.1	8	75	14	60	5	13	0	80	0.88
5380662--5380718	16	3.5	16	82	2	69	3	17	0	78	0.88
5380662--5380725	16	3.9	17	80	10	62	4	18	0	76	0.95
5384555--5385060	57	8.7	57	91	6	795	34	13	7	43	1.74
5384964--5385052	27	3.2	27	62	20	65	37	14	6	41	1.72
5386116--5386220	16	6.6	16	69	20	60	64	7	0	27	1.20
5386086--5386211	35	3.6	34	74	18	100	62	6	0	30	1.25
5387110--5387141	16	2.0	16	93	0	55	56	9	0	34	1.32
5387706--5387731	12	2.2	12	100	0	52	80	0	0	19	0.71
5392127--5392155	8	3.6	8	100	0	58	62	0	0	37	0.96
5392962--5393018	28	2.0	28	90	6	89	47	1	17	33	1.58
5393420--5393456	10	4.0	10	83	16	53	59	0	0	40	0.97
5395478--5395558	12	6.4	13	72	17	55	4	6	8	80	1.02
5395524--5395557	15	2.1	15	89	10	50	2	5	2	88	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5395603--5395674	36	2.0	36	100	0	144	41	19	19	19	1.90
5397223--5397248	11	2.4	11	100	0	52	15	7	0	76	0.99
5399795--5399819	7	3.6	7	100	0	50	88	0	0	12	0.53
5399981--5400025	24	1.9	23	86	13	65	77	2	0	20	0.87
5399793--5400192	206	2.0	199	79	12	433	50	7	7	34	1.60
5401214--5401267	13	4.2	13	82	13	60	75	0	1	22	0.89
5401214--5401306	29	3.3	28	78	13	93	74	1	4	20	1.05
5401214--5401306	27	3.3	27	76	20	93	74	1	4	20	1.05
5406186--5406246	25	2.5	23	79	10	68	6	4	9	78	1.07
5406331--5406359	15	1.9	15	100	0	58	55	0	6	37	1.27
5406323--5406570	60	4.0	60	73	16	218	48	5	12	34	1.63
5407986--5408030	22	2.1	22	87	4	65	33	8	2	55	1.43
5408418--5408490	30	2.4	30	77	11	87	39	9	1	49	1.44
5413994--5414031	11	3.5	11	79	13	51	34	5	0	60	1.19
5418630--5418655	3	8.7	3	100	0	52	0	0	30	69	0.89
5423510--5423541	13	2.4	13	94	5	55	9	0	6	84	0.78
5423865--5423906	21	2.0	21	85	4	57	71	0	0	28	0.86
5426600--5426642	19	2.2	20	83	4	52	23	2	2	72	1.08
5427065--5427106	21	2.0	22	85	4	59	47	0	2	50	1.14
5428743--5428794	24	2.2	24	86	6	70	17	15	15	51	1.76
5437616--5437649	14	2.4	14	90	0	50	35	0	0	64	0.94
5438137--5438167	16	1.9	16	93	0	53	61	3	6	29	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5439970--5439994	4	6.2	4	100	0	50	52	24	0	24	1.48
5444034--5444092	30	1.9	32	86	6	86	32	10	6	50	1.62
5447698--5447731	13	2.6	13	90	0	50	50	0	0	50	1.00
5448592--5448753	20	8.1	20	71	10	107	16	4	31	47	1.66
5450385--5450419	10	3.5	10	88	0	52	28	25	11	34	1.91
5452072--5452162	45	2.0	46	91	2	148	53	6	7	31	1.55
5453681--5453775	30	3.2	30	75	11	95	38	11	1	48	1.47
5453682--5453796	60	1.9	60	82	3	142	38	10	1	49	1.47
5453696--5453808	30	3.7	30	72	3	84	36	12	2	48	1.55
5456303--5456327	12	2.1	12	100	0	50	24	0	60	16	1.36
5462949--5462976	2	14.0	2	100	0	56	50	0	0	50	1.00
5464714--5464748	2	17.5	2	100	0	70	0	51	0	48	1.00
5465096--5465140	23	1.9	24	86	4	65	11	13	22	53	1.71
5465235--5465269	17	2.0	18	94	5	63	51	11	5	31	1.61
5465973--5466018	25	1.9	23	86	8	65	76	2	4	17	1.06
5470109--5470140	2	16.0	2	93	0	55	50	3	0	46	1.17
5470154--5470210	24	2.6	21	77	22	64	54	0	0	45	0.99
5470181--5470215	17	2.1	17	88	0	52	54	0	0	45	0.99
5470121--5470226	41	2.5	41	81	9	115	51	0	0	47	1.07
5472749--5472791	22	2.0	22	90	0	68	32	16	9	41	1.80
5472924--5472975	24	2.2	24	86	6	70	19	17	9	53	1.70
5479883--5479921	18	2.1	18	85	9	51	43	5	7	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5482195--5482228	5	6.4	5	93	6	50	73	0	0	26	0.83
5485097--5485126	15	1.9	16	93	6	53	20	0	0	80	0.72
5487735--5487910	84	2.1	85	96	1	327	59	6	14	19	1.58
5501455--5501483	13	2.2	13	100	0	58	86	13	0	0	0.58
5521273--5521307	12	2.9	12	100	0	70	8	42	0	48	1.33
5525323--5525369	23	2.0	23	100	0	94	27	29	21	21	1.98
5525385--5525414	10	3.1	10	95	4	53	36	0	0	63	0.95
5525387--5525416	9	3.2	9	95	4	51	36	0	0	63	0.95
5527042--5527117	39	1.9	39	91	0	125	21	5	39	34	1.76
5531467--5531494	3	9.3	3	100	0	56	32	0	0	67	0.91
5533271--5533357	30	2.9	30	98	0	165	8	9	22	59	1.54
5533271--5533355	15	5.7	15	70	10	66	8	8	23	60	1.53
5533718--5533743	1	26.0	1	100	0	52	0	0	0	100	0.00
5533998--5534030	15	2.2	15	94	0	57	30	9	27	33	1.88
5548675--5548704	10	3.1	10	95	4	53	36	0	0	63	0.95
5548677--5548706	9	3.2	9	95	4	51	36	0	0	63	0.95
5550335--5550414	39	2.1	39	92	0	133	22	5	38	33	1.76
5556478--5556540	30	2.1	30	93	0	108	9	11	22	57	1.62
5556483--5556538	15	3.7	15	72	9	51	10	7	23	58	1.56
5557171--5557203	15	2.2	15	94	0	57	30	9	27	33	1.88
5557245--5557401	77	2.0	77	88	0	233	41	8	12	38	1.72
5570065--5570094	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5570294--5570370	18	3.9	21	74	14	58	64	1	3	29	1.19
5570294--5570334	22	2.0	20	85	9	55	65	2	4	26	1.25
5570317--5570370	9	5.8	9	80	6	63	64	0	3	31	1.11
5570324--5570387	18	3.4	19	80	6	76	57	0	4	37	1.19
5570317--5570376	18	3.2	19	80	7	77	65	0	5	30	1.14
5570409--5570445	19	1.9	20	94	5	67	54	5	0	40	1.24
5570428--5570472	11	4.3	10	83	8	54	62	6	2	28	1.33
5570477--5570520	17	2.6	17	85	7	54	61	2	2	34	1.21
5570518--5570556	15	2.5	16	79	8	53	69	15	2	12	1.30
5570558--5570634	10	7.6	10	76	12	68	55	1	6	36	1.34
5570558--5570624	11	6.5	11	77	8	61	55	1	5	37	1.34
5570558--5570723	10	17.5	10	70	21	60	57	3	3	35	1.31
5570616--5570684	8	8.0	8	70	20	50	59	4	1	34	1.26
5570568--5570723	20	8.3	19	73	18	114	58	3	2	35	1.27
5570760--5570822	19	3.2	19	90	6	90	49	3	0	47	1.17
5570789--5570864	38	2.0	38	87	10	111	36	0	1	61	1.04
5570778--5570850	19	3.9	18	76	3	65	45	0	0	54	0.99
5570996--5571075	35	2.3	36	76	8	85	35	5	0	60	1.19
5574062--5574096	2	17.5	2	100	0	70	48	0	0	51	1.00
5574134--5574177	20	2.1	21	87	4	63	40	0	2	56	1.11
5578670--5578710	17	2.5	17	84	11	50	75	2	2	19	1.03
5580574--5580840	60	4.5	59	79	4	252	48	3	10	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5581139--5581174	17	2.1	17	90	10	56	33	0	2	63	1.08
5581142--5581173	14	2.2	15	94	5	57	34	0	3	62	1.11
5581164--5581236	35	2.0	37	82	10	89	26	4	4	65	1.28
5581229--5581269	18	2.5	16	82	17	57	14	9	7	68	1.39
5581238--5581290	28	1.9	27	84	3	70	16	11	3	67	1.35
5581558--5581611	25	2.2	25	83	6	65	38	5	18	37	1.74
5582112--5582136	9	2.8	9	100	0	50	20	0	0	80	0.72
5582162--5582246	6	13.7	6	68	19	50	15	7	1	76	1.06
5582198--5582246	16	3.1	15	80	8	53	16	6	0	77	0.96
5582264--5582787	117	4.4	118	92	4	851	44	8	12	33	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160