genome.fa.s334.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  47  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10376368--10376411	19	2.3	19	84	0	61	25	15	20	38	1.92
10376695--10376758	23	2.7	23	83	7	67	17	4	3	75	1.11
10376742--10376774	16	2.0	17	88	5	50	12	3	3	81	0.91
10376871--10376929	20	2.9	19	78	16	57	61	6	0	32	1.22
10382836--10382884	17	2.7	17	81	9	53	24	2	12	61	1.42
10386085--10386224	70	2.0	70	97	0	262	27	13	16	42	1.86
10391973--10392004	12	2.7	12	95	0	55	50	15	31	3	1.60
10394088--10394132	21	2.1	21	87	0	63	57	4	8	28	1.48
10398589--10398687	7	13.4	7	72	21	62	72	11	1	15	1.17
10398612--10398680	18	4.0	17	85	10	79	73	11	1	13	1.15
10398627--10398687	25	2.4	25	94	5	106	75	11	0	13	1.05
10398634--10398709	10	8.3	10	70	21	51	78	10	1	9	1.01
10398652--10398709	18	3.2	18	83	11	73	81	10	1	6	0.95
10398612--10398662	17	3.1	16	88	8	75	72	11	1	13	1.20
10398623--10398709	9	10.0	8	72	17	50	78	11	1	9	1.03
10398637--10398710	18	4.0	19	78	13	66	77	10	2	9	1.10
10399779--10399818	20	2.0	21	90	5	64	70	5	0	25	1.08
10399996--10400041	18	2.6	18	86	6	67	63	2	8	26	1.35
10412006--10412451	49	8.9	50	79	5	438	28	12	21	37	1.89
10412049--10412450	99	4.1	98	83	6	477	28	12	21	37	1.89
10412050--10412454	200	2.0	198	87	1	569	28	12	21	37	1.90
10412736--10412770	16	2.2	16	89	0	52	74	8	0	17	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10412713--10412760	22	2.1	22	82	17	55	70	10	0	18	1.15
10416377--10416411	17	2.1	17	89	10	54	14	8	0	77	0.99
10417357--10417405	25	2.0	25	92	4	82	57	0	0	42	0.99
10417359--10417417	24	2.5	24	89	10	86	54	0	0	45	0.99
10419843--10419873	2	15.5	2	100	0	62	48	0	0	51	1.00
10420498--10420538	2	21.0	2	90	5	66	48	2	0	48	1.14
10424097--10424253	52	3.0	51	86	5	199	25	25	8	40	1.84
10424280--10424319	11	3.6	11	100	0	80	52	27	0	20	1.46
10424555--10424616	25	2.5	25	83	0	79	22	37	8	32	1.83
10424651--10424763	31	3.7	30	84	5	154	24	23	21	30	1.98
10425248--10425404	52	3.0	52	86	3	201	25	26	8	39	1.85
10425557--10425636	38	2.1	37	90	6	126	32	8	11	47	1.70
10426038--10426093	26	2.1	28	83	6	71	69	12	8	8	1.36
10427645--10427677	17	1.9	17	93	0	57	30	6	18	45	1.73
10427667--10427728	18	3.5	18	70	12	56	37	14	16	32	1.89
10427784--10427847	33	1.9	33	83	0	83	42	10	7	39	1.69
10427801--10427849	17	2.9	17	78	3	55	42	14	6	36	1.70
10428147--10428409	46	5.8	45	71	9	165	41	15	6	36	1.74
10428661--10428723	24	2.6	24	89	0	90	33	23	15	26	1.95
10429053--10429200	3	52.3	3	72	20	88	32	2	5	60	1.31
10429082--10429200	36	3.2	37	83	8	127	34	1	4	59	1.27
10429095--10429202	31	3.3	32	81	13	123	34	0	3	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10429079--10429202	5	23.6	5	75	18	85	34	1	4	59	1.26
10430010--10430097	5	17.0	5	71	24	51	19	0	4	76	0.96
10430010--10430097	15	6.0	15	74	11	76	19	0	4	76	0.96
10430063--10430097	5	7.0	5	87	12	54	20	0	0	80	0.72
10433473--10433576	3	36.0	3	74	14	58	31	1	4	61	1.28
10433467--10433510	23	1.9	23	85	0	61	22	2	6	68	1.25
10433474--10433692	8	25.9	8	66	17	72	33	3	6	56	1.42
10433493--10433585	48	1.9	49	83	14	122	34	2	6	56	1.37
10433639--10433692	3	18.0	3	75	21	51	33	3	1	61	1.25
10434497--10434582	8	10.1	8	69	16	57	17	1	2	79	0.91
10434489--10434533	19	2.3	20	92	3	74	13	2	2	82	0.86
10434516--10434565	17	3.1	15	78	13	55	20	2	0	78	0.86
10437552--10437641	42	2.1	43	81	2	101	40	20	11	28	1.86
10437732--10437763	14	2.3	14	94	0	55	0	15	0	84	0.63
10437964--10438011	19	2.5	20	83	13	64	62	8	8	20	1.49
10445099--10445146	24	2.0	24	84	8	62	41	14	10	33	1.80
10445081--10445193	59	1.9	59	88	0	172	38	12	11	38	1.79
10445105--10445151	24	2.0	24	87	8	69	44	10	8	36	1.70
10445106--10445163	24	2.3	24	82	11	64	41	8	8	41	1.66
10445301--10445386	43	2.0	44	86	2	120	29	18	12	39	1.88
10445593--10445628	17	2.2	16	90	9	56	11	0	5	83	0.80
10447998--10448086	38	2.3	38	96	0	160	38	12	14	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10447998--10448103	38	2.8	38	87	5	108	41	14	13	31	1.84
10459913--10459947	18	1.9	18	88	0	52	42	2	11	42	1.55
10463548--10463654	53	2.0	53	85	5	146	32	11	6	49	1.64
10464142--10464180	4	9.8	4	86	10	53	76	5	0	17	0.96
10464609--10464656	21	2.3	22	85	10	73	52	14	14	18	1.75
10464885--10464921	19	1.9	19	88	0	56	24	10	10	54	1.67
10465404--10465493	4	21.8	4	70	15	58	70	2	6	21	1.22
10465404--10465451	26	1.9	24	87	8	69	66	2	8	22	1.29
10465517--10465591	7	10.3	7	72	17	55	69	5	4	21	1.25
10470222--10470262	21	2.0	21	85	0	55	41	7	4	46	1.53
10470289--10470347	24	2.4	25	81	15	79	50	1	0	47	1.11
10472656--10472693	17	2.3	17	86	13	53	23	0	2	73	0.95
10472897--10472941	11	4.0	11	83	11	56	77	4	2	15	1.02
10472897--10472942	23	2.0	23	86	0	65	78	4	2	15	1.01
10474172--10474968	120	6.7	120	74	6	420	45	13	21	19	1.85
10475303--10475355	17	3.1	17	73	13	54	33	13	18	33	1.90
10476612--10476662	23	2.2	24	89	10	79	0	15	5	78	0.93
10479879--10479964	43	2.1	41	82	8	104	65	3	12	18	1.40
10480791--10480840	5	8.5	6	80	14	52	78	0	2	20	0.86
10480791--10480840	18	2.9	17	82	11	66	78	0	2	20	0.86
10481720--10481816	3	33.7	3	69	12	51	57	2	5	35	1.32
10481720--10481806	38	2.3	39	81	2	104	56	2	4	36	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10482495--10482545	3	17.0	3	100	0	102	66	0	0	33	0.92
10483234--10483262	3	9.7	3	100	0	58	31	0	0	68	0.89
10483467--10483596	29	4.4	29	86	1	125	56	6	3	33	1.42
10483490--10483601	58	1.9	60	83	3	147	54	7	4	33	1.48
10483819--10483867	19	2.6	19	83	0	53	53	2	0	44	1.12
10483839--10483898	18	3.3	18	88	4	86	38	0	1	60	1.07
10483839--10483897	6	9.8	6	83	7	75	37	0	1	61	1.07
10484939--10484981	22	2.0	22	90	9	70	37	9	6	46	1.63
10491843--10491906	29	2.3	29	94	5	114	35	17	4	42	1.70
10491856--10491916	29	2.1	29	81	3	70	37	14	3	44	1.62
10492865--10493119	129	2.0	129	90	0	402	38	21	11	28	1.89
10495536--10495571	16	2.2	16	95	0	63	13	11	36	38	1.81
10498033--10498173	45	3.1	45	94	2	246	36	5	29	28	1.80
10502197--10502242	22	2.1	22	95	0	83	43	6	17	32	1.75
10503697--10503726	14	2.1	14	100	0	60	56	0	30	13	1.37
10505299--10505332	17	1.9	18	94	5	61	50	0	0	50	1.00
10506009--10506039	13	2.4	13	94	0	53	45	0	0	54	0.99
10511306--10511364	9	6.4	9	74	16	50	69	1	5	23	1.18
10511379--10511415	8	4.6	8	96	0	65	86	0	10	2	0.67
10512297--10512375	3	28.0	3	85	12	78	58	2	0	39	1.12
10512298--10512369	19	3.7	19	90	3	99	56	2	0	40	1.13
10512301--10512441	5	28.2	5	73	16	55	53	4	0	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10513988--10514071	41	2.0	41	100	0	168	33	9	7	50	1.62
10516381--10516422	15	2.9	14	82	6	57	88	9	2	0	0.61
10516371--10516422	22	2.3	22	84	12	70	84	9	3	1	0.82
10519025--10519063	16	2.4	16	82	0	51	43	0	2	53	1.14
10519485--10519533	19	2.4	21	83	6	66	51	0	0	48	1.00
10519932--10520009	4	19.2	4	69	12	52	20	3	3	71	1.17
10519932--10520009	12	6.4	13	72	11	58	20	3	3	71	1.17
10519957--10520008	16	3.1	17	88	5	70	17	3	5	73	1.19
10520939--10520980	19	2.1	20	82	8	50	19	4	9	66	1.38
10523608--10523661	18	3.0	18	77	0	63	50	0	3	46	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160