genome.fa.s334.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  159  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32701724--32701857	46	2.8	46	79	10	137	73	2	4	19	1.11
32701817--32701857	10	4.2	10	81	6	57	78	2	2	17	0.98
32701826--32701862	19	1.9	19	88	0	56	81	2	2	13	0.92
32702748--32702779	11	2.8	12	86	13	50	59	0	6	34	1.23
32702762--32702932	78	2.1	80	77	14	172	66	5	2	25	1.24
32702807--32702903	9	11.1	8	69	17	52	65	5	1	27	1.20
32702867--32702900	16	2.1	16	89	10	52	70	2	0	26	1.01
32703068--32703095	2	14.0	2	100	0	56	50	0	0	50	1.00
32703450--32703501	23	2.3	22	77	12	52	17	3	5	73	1.19
32703518--32703564	21	2.3	21	88	3	69	53	2	0	44	1.12
32705654--32705685	1	32.0	1	93	0	55	96	0	3	0	0.20
32709128--32709198	4	17.2	4	82	8	63	19	1	5	73	1.11
32709246--32709397	60	2.5	60	85	9	170	50	9	7	31	1.64
32713912--32714001	36	2.5	37	84	10	109	71	1	15	12	1.21
32713932--32713994	13	5.0	13	74	14	53	76	0	14	9	1.02
32713954--32714003	13	4.1	13	73	21	54	72	0	20	8	1.10
32713912--32714016	34	3.0	35	80	14	103	70	0	16	12	1.22
32714828--32714888	15	4.2	15	75	8	72	34	16	8	40	1.78
32714842--32714897	28	2.0	28	82	0	67	32	17	10	39	1.84
32715503--32715707	43	4.7	43	70	12	123	28	8	15	46	1.76
32715636--32715807	48	3.6	48	75	11	140	26	8	15	49	1.73
32715864--32715952	45	2.0	44	82	2	106	32	11	16	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32716015--32716057	17	2.6	16	81	3	50	32	9	16	41	1.80
32716078--32716148	36	2.0	36	88	0	106	33	11	7	47	1.66
32716093--32716241	18	8.3	18	71	5	104	26	13	10	48	1.75
32716075--32716218	54	2.7	52	77	10	128	30	13	9	46	1.75
32716173--32716242	35	2.0	36	85	2	97	27	11	10	51	1.69
32716929--32716996	4	16.8	4	73	8	57	19	2	7	70	1.24
32716935--32716996	16	3.8	16	75	12	63	19	1	8	70	1.20
32716999--32717043	20	2.2	20	84	8	54	68	0	2	28	1.01
32717489--32717626	66	2.1	66	93	0	231	42	5	12	39	1.66
32719656--32719680	2	12.5	2	100	0	50	52	0	0	48	1.00
32720375--32720402	1	28.0	1	100	0	56	100	0	0	0	0.00
32730669--32730700	15	2.0	17	88	11	50	28	0	6	65	1.16
32731423--32731619	97	2.0	97	98	0	376	36	17	9	37	1.82
32732539--32732568	2	15.0	2	100	0	60	50	0	0	50	1.00
32733007--32733046	13	3.1	13	85	0	53	85	0	12	2	0.71
32733061--32733282	58	3.8	60	86	6	285	39	12	6	41	1.69
32733177--32733269	29	3.2	30	61	27	72	37	16	7	38	1.77
32733066--32733282	118	1.8	118	84	5	296	39	11	6	42	1.68
32733334--32733373	3	13.0	3	94	5	71	67	0	0	32	0.91
32734264--32734347	3	24.7	3	74	17	51	61	1	4	32	1.24
32734220--32734341	42	2.9	41	78	10	106	59	0	6	32	1.29
32734254--32734347	21	4.5	22	72	17	85	61	1	5	31	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32734356--32734388	14	2.3	15	89	5	50	66	15	3	15	1.37
32734599--32734706	43	2.5	43	86	3	144	37	25	15	21	1.93
32734562--32734865	159	1.9	157	91	1	500	32	22	13	31	1.92
32734754--32735052	42	7.0	43	88	3	337	39	21	14	24	1.91
32734756--32735100	84	4.1	81	82	8	327	38	21	14	25	1.91
32734755--32735100	126	2.7	122	82	7	354	38	21	14	25	1.91
32736078--32736138	17	3.7	16	78	20	63	9	8	0	81	0.86
32736084--32736137	24	2.2	24	90	6	83	9	5	0	85	0.75
32738569--32738952	58	6.6	57	83	9	397	38	13	7	41	1.71
32738569--32738952	116	3.3	114	82	8	470	38	13	7	41	1.71
32738975--32739016	12	3.8	11	84	9	59	80	0	4	14	0.86
32739091--32739115	13	1.9	13	100	0	50	8	32	36	24	1.84
32739926--32740024	3	30.7	3	74	20	53	64	1	4	30	1.18
32739865--32740027	4	40.2	4	69	16	56	65	0	4	29	1.18
32739865--32740024	21	7.6	21	74	15	120	65	0	5	29	1.18
32739880--32740027	7	20.7	7	69	18	67	63	0	5	30	1.21
32740023--32740090	10	6.5	11	79	12	56	73	8	1	16	1.15
32740034--32740066	14	2.3	15	89	5	50	66	15	3	15	1.37
32740066--32740104	5	7.8	5	88	0	60	76	5	0	17	0.96
32744424--32744460	14	2.6	14	82	0	56	45	0	0	54	1.00
32745204--32745243	19	2.1	19	86	9	55	55	5	0	40	1.22
32762191--32762237	12	3.7	12	86	13	67	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32762196--32762249	26	2.2	24	90	6	81	64	0	0	35	0.94
32767335--32767491	4	39.5	4	67	14	51	31	3	1	63	1.23
32767405--32767512	22	5.0	22	81	2	128	32	3	0	62	1.19
32767395--32767512	44	2.7	43	84	6	148	33	3	0	61	1.18
32768049--32768090	15	2.8	15	79	20	52	54	0	45	0	0.99
32768337--32768362	4	6.5	4	100	0	52	23	0	0	76	0.78
32768403--32768455	6	9.3	6	79	8	58	20	1	0	77	0.87
32768388--32768447	28	2.1	27	81	6	66	28	3	1	66	1.17
32768455--32768626	58	3.0	58	85	5	224	45	6	9	37	1.65
32779029--32779069	8	5.2	8	80	13	50	85	0	2	12	0.70
32780080--32780251	41	4.1	41	80	8	193	26	15	21	37	1.93
32780090--32780345	86	2.9	86	88	4	354	23	14	22	40	1.90
32780132--32780345	45	4.8	45	83	4	292	22	14	22	40	1.90
32780519--32780562	8	5.5	8	78	10	54	11	2	4	81	0.92
32780522--32780593	25	2.8	25	78	16	67	15	2	6	75	1.14
32780576--32780782	4	52.5	4	71	14	121	29	3	0	65	1.15
32780576--32780799	22	10.4	22	78	13	200	29	4	0	65	1.17
32780631--32780800	42	3.9	42	81	11	175	29	4	1	64	1.21
32780588--32780799	64	3.4	64	77	13	210	29	4	0	65	1.17
32780692--32780813	42	2.8	43	81	8	124	27	5	0	67	1.13
32781325--32781364	17	2.3	18	83	12	57	57	0	42	0	0.98
32781640--32781747	22	5.1	22	66	17	59	25	1	3	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32781692--32781756	6	11.3	6	85	8	75	16	3	1	78	0.96
32781786--32781913	59	2.1	61	89	2	197	43	7	11	37	1.68
32781837--32781984	77	2.0	74	88	9	219	39	4	14	41	1.64
32781939--32781972	17	2.0	17	94	0	59	44	5	2	47	1.42
32781914--32782120	59	3.6	56	81	10	238	41	4	13	41	1.63
32788491--32788688	98	2.0	98	97	0	369	30	22	9	37	1.85
32788715--32788818	52	2.0	52	88	0	154	28	16	6	48	1.71
32789570--32789672	52	2.0	52	86	0	143	32	12	5	49	1.64
32795631--32795655	3	8.3	3	100	0	50	68	0	32	0	0.90
32807989--32808018	2	15.0	2	100	0	60	50	0	0	50	1.00
32808081--32808130	21	2.4	21	83	9	59	54	0	4	42	1.19
32819699--32819724	2	13.0	2	100	0	52	0	0	50	50	1.00
32822300--32822338	16	2.4	17	83	12	55	20	10	25	43	1.83
32829221--32829261	20	2.0	21	85	4	57	31	12	2	53	1.51
32829668--32829798	52	2.5	52	79	9	160	45	6	16	31	1.72
32830398--32830446	24	2.0	24	84	7	64	38	10	30	20	1.86
32830408--32830457	25	2.0	25	84	7	66	38	6	30	26	1.80
32830701--32830743	22	2.0	22	86	9	61	23	0	25	51	1.49
32830768--32830893	51	2.5	51	81	6	130	46	7	17	28	1.74
32830789--32830893	51	2.0	54	83	5	135	46	6	18	28	1.74
32832463--32832493	2	15.5	2	100	0	62	51	0	0	48	1.00
32833531--32833602	37	1.9	37	91	0	117	31	9	15	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32843118--32843151	2	17.0	2	87	0	50	44	0	0	55	0.99
32844352--32844398	24	2.0	24	83	8	60	72	2	0	25	0.96
32844353--32844398	17	2.7	17	89	0	65	73	2	0	23	0.94
32862337--32862629	149	2.0	149	89	4	450	35	11	11	41	1.78
32862813--32862855	18	2.3	18	84	4	50	74	4	0	20	1.00
32868282--32868318	19	2.0	19	89	5	58	72	5	0	21	1.04
32870547--32870771	60	3.8	58	84	6	285	36	12	7	44	1.69
32870547--32870765	117	1.9	115	83	6	289	35	12	6	45	1.69
32872242--32872595	119	3.0	116	79	8	390	37	10	4	46	1.60
32872242--32872583	60	5.8	57	80	11	316	37	11	4	46	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160