genome.fa.s334.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  108  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20441706--20441749	22	2.0	23	86	4	63	38	6	2	52	1.41
20441932--20441957	2	13.0	2	100	0	52	50	0	0	50	1.00
20442579--20442620	21	2.0	22	90	4	68	38	11	4	45	1.62
20443149--20443177	13	2.1	14	93	6	51	48	0	3	48	1.18
20443789--20443834	18	2.5	19	85	3	67	43	4	4	47	1.42
20453588--20453916	163	2.0	163	98	0	640	39	14	16	28	1.88
20461525--20461567	2	21.5	2	100	0	86	48	0	51	0	1.00
20471299--20471358	30	2.0	30	83	0	75	28	8	10	53	1.63
20474954--20475021	28	2.4	29	80	4	86	45	20	5	27	1.74
20475599--20475635	16	2.1	19	85	14	53	56	13	0	29	1.37
20486099--20486136	19	2.0	20	84	5	51	21	0	5	73	1.02
20486106--20486149	19	2.2	19	84	15	54	18	0	2	79	0.83
20487050--20487091	22	1.9	22	90	0	66	23	19	26	30	1.98
20487142--20487186	23	2.0	21	83	8	54	13	2	6	77	1.05
20487393--20487430	20	1.9	19	89	5	58	23	5	13	57	1.56
20487410--20487445	16	2.2	16	90	0	54	19	5	16	58	1.58
20488951--20488991	17	2.4	17	81	18	50	51	0	0	48	1.00
20489210--20489252	11	3.9	11	76	11	52	18	4	0	76	0.95
20493154--20493258	52	2.0	52	100	0	210	40	9	13	36	1.77
20494776--20494825	22	2.3	23	82	10	68	54	0	0	46	1.00
20495399--20495447	21	2.6	18	83	9	53	40	2	0	57	1.10
20495988--20496078	19	4.9	19	68	12	66	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20495982--20496121	49	2.8	49	75	17	119	47	0	0	51	1.05
20496136--20496169	13	2.5	14	85	9	52	32	14	0	52	1.42
20498365--20498389	2	12.5	2	100	0	50	52	0	0	48	1.00
20500061--20500179	42	3.3	35	70	22	102	47	2	0	49	1.14
20500062--20500128	31	2.2	30	81	7	73	52	1	0	46	1.09
20502816--20502879	7	9.3	7	75	13	53	54	1	1	42	1.19
20507508--20507545	20	1.9	20	88	0	58	42	10	13	34	1.78
20516268--20516315	19	2.5	19	79	3	60	27	12	10	50	1.73
20516584--20516633	19	2.6	18	78	12	55	8	2	14	76	1.10
20517030--20517096	34	2.0	34	88	5	102	35	13	16	34	1.88
20517030--20517128	33	3.0	32	81	11	101	36	15	18	30	1.91
20517219--20517403	34	5.5	34	72	9	121	30	12	20	36	1.90
20517311--20517601	33	8.8	33	67	16	104	31	16	17	34	1.92
20517304--20517611	32	9.4	32	70	12	160	31	15	18	33	1.93
20517798--20517848	22	2.3	21	83	9	66	29	19	17	33	1.95
20519342--20519378	5	7.8	5	91	8	60	0	13	0	86	0.57
20520568--20520626	5	11.8	5	79	13	50	3	22	0	74	0.96
20523488--20523535	4	12.0	4	86	0	60	43	2	31	22	1.65
20528609--20529003	145	2.7	142	80	6	454	43	11	12	32	1.78
20531070--20531116	22	2.1	22	92	0	76	36	17	14	31	1.90
20531194--20531637	236	1.9	234	84	0	528	35	16	12	34	1.87
20532784--20532865	31	2.7	32	88	5	116	41	2	6	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20534528--20534580	26	2.0	26	85	7	72	64	9	0	26	1.24
20537257--20537328	26	2.6	29	75	18	80	20	1	18	59	1.45
20540966--20540999	13	2.7	13	90	4	52	50	2	0	47	1.16
20542416--20542471	18	3.1	18	76	5	51	48	17	7	26	1.73
20553340--20553453	42	2.6	42	73	17	108	50	0	0	48	1.13
20555142--20555250	56	1.9	57	92	1	184	30	4	12	52	1.60
20559963--20560012	26	1.9	26	83	0	64	46	12	2	40	1.52
20560200--20560240	17	2.4	16	81	14	55	48	0	7	43	1.30
20566317--20566350	2	17.0	2	93	0	59	50	2	0	47	1.16
20575543--20575744	99	2.0	99	100	0	404	33	6	23	37	1.80
20589609--20589635	11	2.5	11	100	0	54	18	0	0	81	0.69
20590518--20590558	14	3.1	14	76	23	52	0	36	0	63	0.95
20590517--20590554	11	3.1	12	82	17	51	0	34	0	65	0.93
20592168--20592345	94	1.9	94	85	2	250	32	11	12	44	1.77
20593918--20593947	13	2.3	13	94	0	51	36	26	3	33	1.73
20601558--20601594	15	2.4	15	86	4	56	32	0	24	43	1.55
20604666--20605271	306	2.0	306	88	1	903	19	33	22	25	1.97
20604972--20605817	370	2.3	370	91	1	1363	18	33	23	24	1.96
20606892--20606922	16	1.9	16	93	0	53	35	6	25	32	1.82
20609490--20609525	12	2.8	13	87	8	56	75	0	5	19	1.00
20611260--20611311	22	2.3	22	83	9	61	42	9	11	36	1.74
20611435--20611472	13	2.8	13	81	18	51	39	13	21	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20616900--20616930	4	7.8	4	100	0	62	77	22	0	0	0.77
20620189--20620220	12	2.6	12	95	5	55	34	0	12	53	1.39
20625108--20625144	13	2.8	13	91	0	65	45	24	13	16	1.83
20625122--20625179	27	2.1	28	83	3	73	44	27	10	17	1.81
20629210--20629261	3	17.3	3	100	0	104	65	0	0	34	0.93
20630009--20630038	12	2.4	12	94	5	51	86	0	13	0	0.57
20631200--20631235	19	1.9	18	88	5	54	69	0	25	5	1.10
20631825--20631891	22	3.1	22	77	12	77	71	0	22	5	1.07
20633443--20633772	32	10.2	31	75	6	205	36	16	16	30	1.91
20633443--20633649	96	2.1	97	86	2	292	34	18	15	30	1.92
20633568--20633787	65	3.4	63	75	13	171	37	14	16	30	1.89
20636459--20636519	15	3.5	18	78	17	58	63	0	3	32	1.10
20636671--20636717	19	2.4	19	89	3	67	46	25	10	17	1.79
20636709--20636745	13	2.8	13	83	0	56	62	18	0	18	1.34
20639656--20639683	2	14.0	2	100	0	56	50	0	0	50	1.00
20642536--20642586	17	2.9	17	85	5	75	11	0	5	82	0.83
20642535--20642585	19	2.8	19	88	8	79	11	0	3	84	0.75
20642793--20643004	83	2.5	84	80	4	214	40	20	14	24	1.90
20642851--20643009	84	1.9	83	87	6	232	42	19	13	24	1.87
20645026--20645092	12	5.8	12	77	20	63	5	17	0	76	0.99
20645025--20645093	24	3.0	23	81	10	77	7	17	0	75	1.02
20645036--20645093	6	9.8	6	77	17	50	5	17	0	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20645370--20645487	61	1.9	62	87	6	177	27	5	11	56	1.54
20651540--20651581	17	2.4	17	84	4	57	30	4	0	64	1.14
20651537--20651578	18	2.5	17	81	11	59	28	4	0	66	1.12
20652940--20652980	3	13.7	3	100	0	82	34	0	0	65	0.93
20653960--20653993	17	2.0	17	88	11	52	23	0	0	76	0.79
20660485--20660569	41	2.0	42	86	2	118	32	15	15	36	1.89
20660855--20661201	182	1.9	182	83	4	457	38	14	14	33	1.86
20661325--20661364	20	2.0	20	90	0	62	32	7	22	37	1.82
20661584--20661612	11	2.6	11	100	0	58	34	17	6	41	1.76
20666691--20666719	2	14.5	2	100	0	58	48	0	0	51	1.00
20671575--20671615	17	2.4	17	88	8	57	31	2	2	63	1.20
20672031--20672136	21	4.9	21	72	12	72	48	10	2	38	1.52
20672033--20672121	16	5.5	16	72	7	63	49	8	2	39	1.47
20672033--20672133	22	4.7	21	71	10	78	48	9	2	38	1.52
20672059--20672117	27	2.2	27	80	16	70	47	11	1	38	1.50
20673775--20673853	36	2.1	39	86	11	112	36	1	0	62	1.04
20673809--20673876	30	2.3	30	89	2	102	35	2	1	60	1.21
20673810--20673878	15	4.7	14	71	13	50	33	2	1	62	1.19
20673779--20673882	16	7.1	15	65	17	58	35	1	0	61	1.14
20674716--20674747	3	10.7	3	100	0	64	34	0	0	65	0.93
20674974--20675027	14	4.1	13	80	9	56	27	0	1	70	0.98
20677971--20678038	25	2.7	25	75	6	66	45	29	2	22	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20678269--20678313	23	2.0	23	95	0	81	44	8	11	35	1.71
20679077--20679121	20	2.2	21	84	7	58	55	2	0	42	1.12
20679755--20679784	2	15.0	2	100	0	60	50	0	0	50	1.00
20680200--20680269	34	2.0	35	83	8	90	37	4	2	55	1.34
20681563--20681596	16	2.2	15	89	5	50	47	2	0	50	1.16
20681602--20681627	6	4.3	6	100	0	52	69	0	0	30	0.89
20683321--20683370	22	2.3	22	75	10	57	32	6	4	58	1.41
20688591--20688615	13	1.9	13	100	0	50	8	16	0	76	1.02
20689169--20689223	26	2.1	26	82	3	65	58	5	5	30	1.44
20692055--20692128	18	4.3	17	76	17	64	14	6	0	78	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160