genome.fa.s334.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  50  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857339--10857375	10	3.7	10	88	0	56	29	18	16	35	1.93
10858010--10858095	36	2.4	36	84	9	106	43	2	11	43	1.53
10858570--10858598	8	3.8	8	95	4	51	37	0	0	62	0.96
10859502--10859526	5	5.0	5	100	0	50	80	0	0	20	0.72
10862910--10862939	16	1.9	16	93	6	53	46	0	0	53	1.00
10863177--10863661	134	3.6	133	78	4	444	28	14	19	38	1.90
10865417--10865584	89	1.9	88	80	8	198	38	12	10	39	1.77
10866283--10866307	11	2.3	11	100	0	50	60	0	8	32	1.26
10874216--10874282	32	2.1	32	91	0	107	28	14	11	44	1.81
10877096--10877152	2	28.5	2	92	0	87	0	43	3	52	1.18
10881111--10881214	48	2.2	48	86	8	149	46	2	1	49	1.28
10881327--10881382	21	2.5	22	80	14	69	39	0	0	60	0.97
10882267--10882333	28	2.2	29	84	10	82	44	0	2	52	1.16
10882393--10882452	20	2.8	23	75	17	65	48	1	0	50	1.11
10882428--10882516	35	2.9	29	77	18	97	52	1	0	46	1.07
10882432--10882502	35	2.0	35	94	0	124	54	1	0	43	1.08
10882462--10882517	29	1.9	29	92	0	94	51	0	0	48	1.00
10884191--10884215	4	6.2	4	100	0	50	24	0	0	76	0.80
10886024--10888265	235	9.5	236	76	6	1536	32	12	5	49	1.63
10886118--10888265	698	3.0	689	76	8	1977	32	12	5	50	1.63
10886168--10888238	236	8.8	233	74	10	1307	32	12	5	50	1.62
10890744--10890966	109	2.0	110	92	0	376	37	16	15	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10890902--10891272	48	7.7	48	80	7	385	40	20	11	27	1.87
10890911--10891274	50	7.5	49	78	11	324	40	20	11	27	1.87
10891215--10891245	15	2.1	15	93	0	53	45	19	3	32	1.66
10890912--10891272	98	3.7	98	85	4	448	40	20	11	27	1.87
10902238--10902276	16	2.4	16	80	16	53	10	2	5	82	0.93
10904463--10904526	19	3.5	17	79	14	65	78	1	20	0	0.84
10904463--10904526	23	2.8	22	73	19	60	78	1	20	0	0.84
10909518--10909547	7	4.1	7	91	8	51	33	0	0	66	0.92
10909518--10909547	15	2.1	14	93	6	51	33	0	0	66	0.92
10910535--10910568	17	2.0	17	88	0	50	32	20	17	29	1.96
10912205--10912475	52	5.1	53	75	6	226	45	5	12	36	1.65
10915984--10916021	16	2.4	17	86	8	53	2	5	7	84	0.86
10916082--10916172	23	4.3	21	74	16	73	74	2	0	23	0.92
10916096--10916173	27	3.1	26	73	19	83	75	1	0	23	0.87
10916089--10916163	23	3.2	23	81	9	82	73	2	0	24	0.96
10916976--10917108	3	45.7	3	81	8	159	60	0	3	35	1.17
10917607--10917755	52	2.8	53	78	10	151	43	16	19	20	1.88
10918988--10919027	13	2.9	14	85	7	64	2	12	0	85	0.71
10922718--10922773	29	2.0	29	82	10	71	12	5	14	67	1.38
10924985--10925037	25	2.1	25	85	0	70	15	13	5	66	1.43
10927113--10927407	151	1.9	153	88	1	441	33	16	18	31	1.94
10928568--10928606	8	4.9	8	87	0	51	17	5	0	76	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10928584--10928640	17	3.3	17	79	11	53	28	1	1	68	1.09
10928600--10928641	19	2.3	19	91	4	68	28	2	2	66	1.16
10929626--10929675	13	3.2	16	75	18	61	54	0	0	46	1.00
10929760--10929794	17	2.1	17	88	0	52	8	8	8	74	1.23
10929998--10930045	7	6.9	7	79	9	53	10	6	2	81	0.95
10929998--10930054	28	2.1	27	80	9	62	10	8	5	75	1.18
10934390--10934468	33	2.5	31	80	12	88	46	2	0	50	1.14
10939665--10939856	95	2.0	95	96	0	357	25	14	16	43	1.86
10942559--10942592	16	2.1	16	100	0	68	41	5	8	44	1.60
10942931--10942972	2	21.0	2	90	0	66	50	4	0	45	1.23
10944707--10944803	41	2.4	41	82	6	108	27	7	30	34	1.84
10949325--10949376	26	2.1	25	82	7	61	15	3	21	59	1.52
10950990--10951104	57	2.0	57	96	0	212	48	6	8	35	1.61
10951527--10951560	16	2.3	15	90	10	52	67	0	8	23	1.18
10951527--10951561	15	2.2	16	90	5	54	68	0	8	22	1.16
10951828--10951861	15	2.4	14	85	9	50	55	8	5	29	1.54
10951472--10952071	304	2.0	301	88	2	880	35	10	11	43	1.74
10953350--10953416	34	1.9	34	82	8	82	43	5	17	32	1.74
10957858--10957937	35	2.3	35	85	10	101	31	13	7	47	1.71
10960230--10960266	14	2.6	14	91	4	56	67	0	0	32	0.91
10960241--10960277	13	2.9	13	84	15	51	70	0	0	29	0.88
10960231--10960278	14	3.5	13	80	13	53	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10962073--10962163	18	5.1	18	73	11	71	35	15	13	36	1.86
10962194--10962266	24	3.0	23	74	20	67	50	13	5	30	1.64
10962191--10962277	16	5.2	16	75	19	63	49	13	9	27	1.73
10964260--10964328	6	11.5	6	77	10	70	2	15	0	81	0.81
10964262--10964329	13	4.9	14	78	18	72	2	16	0	80	0.82
10964272--10964323	20	2.6	20	84	6	61	3	17	0	78	0.89
10966506--10966599	6	15.0	6	78	9	82	22	2	1	74	0.99
10966515--10966666	33	4.3	35	78	10	143	23	4	1	71	1.12
10966509--10966599	39	2.4	36	90	7	137	23	2	1	73	1.01
10966541--10966649	36	3.0	35	81	9	121	23	4	0	70	1.11
10966508--10966629	6	19.3	6	74	14	50	22	3	1	72	1.09
10966634--10966680	21	2.2	21	85	7	60	25	6	0	68	1.13
10966604--10966684	17	4.7	17	79	8	76	25	6	0	67	1.13
10971271--10971317	14	3.4	14	80	19	55	65	0	0	34	0.93
10971274--10971316	6	6.5	6	82	17	50	67	0	0	32	0.91
10971312--10971361	19	2.5	20	90	9	75	74	6	6	14	1.21
10978647--10978676	11	2.6	12	89	10	53	63	10	10	16	1.51
10981265--10981328	29	2.2	29	86	8	85	45	1	17	35	1.58
10985956--10986685	21	35.1	21	66	19	218	46	3	3	46	1.37
10986284--10986572	147	1.9	149	87	5	424	47	4	3	44	1.40
10986490--10986543	26	2.2	24	86	6	72	42	1	3	51	1.30
10986469--10986614	66	2.2	65	80	11	147	45	4	4	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10986596--10986716	11	10.9	11	69	18	81	40	1	1	56	1.19
10986633--10986692	30	2.0	30	93	3	102	41	1	0	56	1.09
10986599--10986693	19	5.2	20	67	27	66	42	2	1	54	1.19
10986627--10986676	14	3.4	14	74	15	55	42	2	0	56	1.11
10986624--10986701	17	4.6	17	73	16	74	41	1	0	57	1.07
10986637--10986739	47	2.2	46	82	5	125	38	0	4	55	1.28
10986831--10986881	26	1.9	27	88	4	77	33	1	3	60	1.26
10986830--10986887	26	2.2	27	81	3	73	36	1	3	58	1.25
10986921--10986954	3	11.0	3	93	6	59	35	0	0	64	0.94
10986970--10986998	10	2.7	11	94	5	51	89	0	6	3	0.57
10987395--10987428	10	3.3	10	92	8	59	26	0	11	61	1.30
10987395--10987429	11	3.3	11	84	8	54	25	0	11	62	1.28
10988456--10988537	34	2.3	35	80	12	89	56	2	0	41	1.13
10988464--10988504	18	2.2	19	86	4	57	63	0	0	36	0.95
10992663--10992691	15	1.9	15	100	0	58	55	20	3	20	1.58
11000322--11000417	39	2.4	40	80	1	113	25	8	17	48	1.75
11000571--11000830	40	6.5	40	85	4	328	26	11	17	45	1.82
11000532--11000795	120	2.2	121	87	4	390	26	12	17	43	1.84
11001864--11001918	27	2.0	27	82	6	67	18	3	7	70	1.25
11003249--11003372	21	5.9	20	77	11	97	51	0	5	42	1.25
11003404--11003539	11	12.5	11	66	21	63	36	1	2	59	1.22
11003404--11003544	22	7.1	20	69	25	77	36	1	2	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11003494--11003544	21	2.4	22	84	15	72	41	1	1	54	1.22
11006768--11006819	21	2.5	21	83	0	77	19	21	25	34	1.96
11009798--11009829	16	2.0	16	93	0	55	43	9	0	46	1.35
11010496--11010567	29	2.4	30	84	11	94	45	2	0	51	1.15
11011185--11011222	17	2.2	18	86	13	53	73	2	23	0	0.95
11011514--11011554	15	2.6	16	81	14	50	73	0	26	0	0.84
11019053--11019078	2	13.0	2	100	0	52	50	0	50	0	1.00
11037143--11037195	27	2.0	27	85	7	72	81	5	7	5	1.00
11038148--11038304	53	3.0	53	77	5	185	33	10	15	40	1.82
11038149--11038362	103	2.2	96	85	8	286	35	11	14	39	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160