genome.fa.s334.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  97  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18331902--18331950	21	2.3	22	89	3	73	40	4	20	34	1.71
18332059--18332114	20	2.7	21	86	2	69	37	8	16	37	1.80
18332064--18332122	21	2.9	21	89	2	84	37	10	15	37	1.81
18331918--18332115	79	2.5	79	86	3	281	38	10	18	32	1.85
18334815--18334862	24	2.0	24	87	0	69	68	2	25	4	1.18
18335229--18335258	9	3.3	9	90	0	51	86	3	10	0	0.67
18336464--18336511	21	2.2	22	88	3	71	35	10	16	37	1.83
18336494--18336627	57	2.3	57	92	1	223	36	12	19	31	1.89
18336552--18336775	79	2.8	79	86	4	301	37	10	17	34	1.85
18337145--18337397	41	6.3	41	80	7	272	22	12	22	41	1.87
18337279--18337349	36	2.0	36	83	5	90	23	11	26	38	1.89
18337152--18337359	83	2.6	79	82	9	237	22	12	22	42	1.87
18337404--18337429	9	2.9	9	100	0	52	92	7	0	0	0.39
18337768--18337810	20	2.0	22	82	17	54	60	9	18	11	1.57
18337847--18337881	14	2.3	16	90	9	56	40	0	2	57	1.14
18338408--18338448	19	2.2	19	86	4	57	17	0	4	78	0.93
18339285--18339330	21	2.2	21	92	0	74	45	8	0	45	1.34
18339619--18339674	29	1.9	29	88	0	85	71	0	1	26	0.96
18343996--18344021	13	2.0	13	100	0	52	30	7	7	53	1.57
18345710--18345745	13	2.6	14	86	8	56	63	0	5	30	1.17
18349382--18349606	111	2.0	111	91	0	360	32	10	12	45	1.75
18352838--18352869	15	2.1	15	100	0	64	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18353370--18353601	127	1.8	126	81	10	292	53	12	2	31	1.52
18353647--18353684	20	1.9	20	88	0	58	73	2	7	15	1.17
18355557--18355704	70	2.1	70	82	5	174	33	7	4	54	1.49
18362353--18362386	17	2.0	17	100	0	68	52	23	5	17	1.66
18363485--18363823	168	2.0	168	98	0	651	30	18	14	36	1.91
18364692--18365078	195	2.0	195	98	0	756	34	17	15	32	1.91
18367472--18367510	19	2.1	19	85	9	53	43	5	7	43	1.55
18371086--18371127	19	2.1	21	86	8	61	30	0	9	59	1.29
18371107--18374875	234	16.4	232	71	13	1616	31	11	6	50	1.63
18372471--18374200	934	1.8	931	78	7	1916	32	10	5	51	1.61
18372214--18374604	698	3.5	682	76	9	1949	31	11	6	50	1.63
18374601--18374649	20	2.4	21	82	3	55	32	6	4	57	1.42
18375464--18375526	10	6.2	10	78	10	65	25	9	17	47	1.77
18381499--18381528	14	2.1	14	93	0	51	63	0	0	36	0.95
18389770--18389831	32	2.0	32	84	9	83	40	9	4	45	1.58
18389850--18390130	49	5.7	49	71	10	189	30	12	11	45	1.77
18398531--18398584	26	2.1	26	96	0	99	24	7	7	61	1.49
18402378--18402408	16	1.9	16	93	0	53	48	16	6	29	1.70
18402439--18402568	25	5.1	24	70	14	82	50	11	4	33	1.59
18402427--18402597	78	2.2	78	89	2	261	50	11	5	32	1.61
18402558--18402623	21	3.2	20	78	8	69	54	9	6	30	1.56
18402577--18402630	17	3.1	17	86	7	65	53	11	7	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18402583--18402642	17	3.4	18	82	10	63	51	11	6	30	1.64
18402952--18403010	25	2.3	26	85	8	77	76	6	8	8	1.16
18404157--18404247	6	15.0	6	83	1	92	64	8	2	24	1.33
18404157--18404242	24	3.6	24	87	0	118	66	9	1	23	1.28
18404163--18404233	12	5.9	12	91	0	106	67	9	0	22	1.20
18408760--18408803	2	22.0	2	80	0	52	50	9	0	40	1.34
18413860--18413884	2	12.5	2	100	0	50	0	52	0	48	1.00
18417187--18417263	33	2.4	32	80	6	86	58	5	3	32	1.38
18418797--18418892	48	2.1	46	82	9	115	20	11	8	59	1.57
18423693--18423850	79	2.0	79	85	2	210	33	23	8	34	1.85
18424418--18424491	8	8.6	8	76	10	67	12	18	1	67	1.29
18424418--18424491	17	4.2	17	80	11	87	12	18	1	67	1.29
18425439--18425502	23	2.8	23	95	0	110	48	18	6	26	1.72
18436458--18436488	13	2.3	14	94	5	55	19	6	16	58	1.59
18437105--18437139	7	4.9	7	96	3	61	14	2	0	82	0.77
18437195--18437229	14	2.5	14	80	0	52	25	8	0	65	1.21
18437414--18437487	32	2.3	32	88	2	112	47	18	10	22	1.80
18439039--18439190	33	4.7	31	75	8	124	32	14	15	37	1.88
18439076--18439217	66	2.2	66	82	7	164	33	14	18	33	1.91
18439078--18439235	33	4.8	32	73	12	99	31	14	18	35	1.91
18439302--18439613	155	2.0	155	98	1	608	38	14	17	29	1.90
18440672--18440742	7	9.4	7	76	21	56	2	16	1	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18440676--18440743	33	2.1	33	83	5	84	2	16	1	79	0.93
18440710--18440757	19	2.5	20	83	13	64	6	18	0	75	1.01
18441998--18442059	18	3.3	19	80	17	76	4	19	1	74	1.09
18442000--18442043	9	4.6	9	88	8	61	2	18	2	77	0.98
18446899--18446923	7	3.6	7	100	0	50	28	0	0	72	0.86
18447209--18447267	25	2.3	26	85	2	75	22	5	22	50	1.68
18447225--18447269	13	3.5	13	81	6	56	17	4	22	55	1.60
18448455--18448505	20	2.7	18	80	16	59	31	7	9	50	1.64
18448530--18448603	24	3.1	23	88	3	94	31	2	9	56	1.45
18448455--18448623	24	8.4	20	70	19	70	28	5	11	53	1.59
18448582--18448750	55	3.1	55	88	0	259	30	6	8	55	1.55
18448587--18448861	87	3.2	88	82	6	262	30	6	9	53	1.59
18448698--18448783	32	2.7	32	92	1	136	30	5	8	55	1.52
18448729--18448844	55	2.2	51	83	7	142	32	6	6	53	1.54
18448775--18448820	20	2.2	20	88	7	65	34	4	8	52	1.52
18448950--18448987	17	2.2	17	86	9	51	31	5	13	50	1.63
18453756--18453802	21	2.2	21	82	14	53	46	14	12	25	1.80
18453906--18454342	145	3.1	144	79	10	510	33	16	10	39	1.83
18453974--18454242	130	2.0	132	86	4	375	31	15	11	40	1.83
18458732--18458761	15	1.9	16	93	6	53	33	13	3	50	1.58
18458985--18459033	11	4.2	11	75	14	53	83	4	10	2	0.85
18458985--18459033	12	4.1	12	79	7	55	83	4	10	2	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18460493--18460864	43	8.7	42	75	8	254	29	13	18	38	1.89
18460493--18460864	42	8.7	43	77	7	350	29	13	18	38	1.89
18460493--18460858	128	2.8	126	80	9	375	29	12	18	38	1.88
18460493--18460864	85	4.4	85	80	8	362	29	13	18	38	1.89
18460925--18461107	38	4.9	38	77	12	157	26	10	23	39	1.87
18460925--18461085	37	4.3	37	81	10	177	26	11	22	39	1.88
18461108--18461247	43	3.3	43	82	7	135	29	10	18	41	1.84
18461492--18461534	20	2.2	20	86	0	59	13	0	4	81	0.84
18462184--18462227	21	2.1	21	86	0	61	29	2	13	54	1.51
18462203--18462276	24	3.1	23	88	3	94	31	2	9	56	1.45
18462231--18462296	20	3.1	20	76	16	69	30	4	9	56	1.51
18462292--18462336	23	1.9	24	86	4	65	22	2	11	64	1.36
18462258--18462364	55	2.0	55	87	3	155	26	6	9	57	1.54
18462650--18462717	20	3.7	20	72	21	67	36	4	8	50	1.54
18463118--18463143	13	2.0	13	100	0	52	46	7	7	38	1.61
18463512--18463545	14	2.4	14	95	0	59	23	8	0	67	1.18
18463727--18463800	32	2.3	32	88	6	114	47	18	12	21	1.81
18465231--18465279	3	16.7	3	91	4	82	30	0	0	69	0.89
18469637--18469693	3	19.3	3	85	3	80	31	1	1	64	1.13
18470119--18470158	19	2.1	19	85	4	53	22	7	37	32	1.82
18471519--18471583	18	3.5	19	71	12	55	21	7	4	66	1.36
18481351--18481468	62	1.9	61	86	5	166	59	7	16	16	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18482155--18482661	119	4.2	119	78	6	438	20	19	14	45	1.85
18483006--18483037	3	11.0	3	93	6	57	31	0	0	68	0.90
18483910--18483958	19	2.6	19	90	3	73	12	4	2	81	0.91
18483925--18483993	18	3.9	17	79	9	59	24	2	1	71	1.09
18484066--18484120	26	2.2	25	90	6	85	63	9	0	27	1.24
18484192--18484216	12	2.1	12	100	0	50	48	8	0	44	1.32
18484205--18484245	19	2.1	19	90	4	64	60	9	0	29	1.28
18486807--18486859	21	2.5	21	81	6	63	32	30	9	28	1.88
18487703--18487772	4	17.2	4	82	11	81	21	1	4	72	1.09
18488243--18488299	26	2.2	26	82	14	66	38	3	0	57	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160