genome.fa.s334.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  21  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5769457--5769483	14	1.9	14	100	0	54	37	14	3	44	1.63
5771169--5771229	27	2.4	25	83	5	68	47	0	0	52	1.00
5771182--5771213	15	2.0	17	88	11	50	46	0	0	53	1.00
5772598--5772646	20	2.3	21	82	10	55	46	0	2	51	1.12
5777633--5777665	2	16.5	2	93	0	57	0	3	48	48	1.17
5778792--5778826	17	2.1	17	88	0	52	0	2	11	85	0.69
5778867--5778894	2	14.0	2	100	0	56	50	0	50	0	1.00
5780832--5780856	2	12.5	2	100	0	50	0	0	52	48	1.00
5790715--5790852	69	2.0	69	90	2	215	37	2	6	53	1.39
5792509--5792556	18	2.7	18	75	9	53	47	0	0	52	1.00
5793031--5793070	15	2.6	16	84	11	57	57	0	0	42	0.98
5793633--5793666	16	2.1	17	88	5	52	50	0	0	50	1.00
5793603--5793659	29	2.1	26	81	15	62	52	0	3	43	1.18
5795228--5795266	2	19.5	2	100	0	78	51	0	0	48	1.00
5795983--5796020	2	19.0	2	100	0	76	50	0	0	50	1.00
5814316--5814367	27	1.9	27	92	0	86	26	9	21	42	1.83
5822220--5822279	6	10.0	6	76	5	50	23	1	5	70	1.16
5822767--5822798	15	2.1	16	94	5	57	0	6	3	90	0.53
5823198--5823270	15	5.1	14	75	9	58	19	2	1	76	0.98
5823208--5823279	23	3.2	24	80	7	71	23	1	1	73	0.99
5823248--5823280	3	11.0	3	100	0	66	33	0	0	66	0.92
5827263--5827331	9	7.8	9	84	10	72	82	0	11	5	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5827266--5827331	25	2.7	24	84	9	80	84	0	10	4	0.75
5827265--5827331	18	3.7	18	84	7	82	83	0	11	4	0.78
5828035--5828097	24	2.6	24	89	0	99	22	14	26	36	1.92
5828385--5828444	29	2.1	29	90	0	93	26	3	20	50	1.64
5828838--5828979	67	2.1	67	98	0	275	26	16	14	42	1.86
5828942--5829002	16	3.8	16	78	4	61	31	22	11	34	1.90
5828960--5829005	16	2.9	16	86	0	65	34	21	10	32	1.88
5830424--5830494	12	5.8	12	79	11	72	22	1	0	76	0.87
5830435--5830495	18	3.3	18	79	18	72	26	1	0	72	0.94
5833412--5833451	21	1.9	21	89	0	62	50	0	22	27	1.50
5833682--5833787	36	3.0	36	68	13	94	50	2	1	45	1.27
5837223--5837435	55	3.8	55	76	3	201	61	10	4	23	1.47
5838038--5838136	50	2.0	50	85	0	135	60	7	6	26	1.46
5840236--5840282	23	2.0	23	83	0	58	46	4	8	40	1.54
5842372--5842397	13	2.0	13	100	0	52	30	0	0	69	0.89
5842843--5842879	16	2.2	18	90	9	60	54	0	0	45	1.00
5842845--5842879	17	2.1	16	89	5	52	54	0	0	45	0.99
5842836--5842895	24	2.5	22	79	12	66	50	0	0	50	1.00
5842983--5843044	29	2.1	30	88	8	92	41	0	1	56	1.09
5843121--5843146	3	8.7	3	100	0	52	30	0	34	34	1.58
5843261--5843290	15	2.0	15	93	0	51	26	6	23	43	1.78
5844070--5844165	32	3.0	31	81	7	95	44	1	1	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5844183--5844260	28	2.7	28	82	11	86	43	5	0	51	1.24
5850092--5850128	3	12.3	3	100	0	74	67	0	0	32	0.91
5850231--5850263	3	11.0	3	100	0	66	66	0	0	33	0.92
5850396--5850452	30	1.9	30	85	7	80	47	33	1	17	1.58
5850528--5850575	15	3.3	15	76	2	53	56	22	0	20	1.43
5858431--5858492	23	2.8	22	80	4	70	32	22	11	33	1.90
5858323--5858614	154	1.9	154	80	2	345	26	19	14	39	1.90
5858717--5858787	36	2.0	36	86	5	99	16	9	19	53	1.71
5858462--5858789	109	3.0	109	76	9	321	24	17	15	41	1.89
5858769--5858807	18	2.2	18	95	0	69	10	17	23	48	1.78
5858829--5859089	110	2.4	110	80	3	301	24	18	16	40	1.90
5859208--5859273	23	2.9	23	72	4	62	37	24	9	28	1.86
5858975--5859296	155	2.1	155	79	3	335	27	18	13	39	1.89
5859204--5859280	22	3.5	22	75	3	82	36	25	10	27	1.89
5859371--5859420	22	2.3	22	89	6	75	40	26	8	26	1.83
5859238--5859489	132	1.9	132	85	1	344	24	20	16	38	1.93
5859444--5859622	36	4.9	37	77	8	134	14	20	19	45	1.85
5859422--5859655	37	6.4	36	74	10	163	14	18	20	46	1.84
5859422--5859655	73	3.2	73	80	3	249	14	18	20	46	1.84
5860212--5860243	16	2.0	16	100	0	64	43	18	0	37	1.51
5860238--5860270	15	2.2	15	94	0	57	36	18	6	39	1.75
5862166--5862218	15	3.5	15	87	5	70	83	3	3	9	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5862162--5862209	25	2.0	25	91	4	80	83	4	2	10	0.87
5862165--5862219	16	3.5	16	87	2	76	83	3	3	9	0.88
5862579--5862637	30	1.9	31	86	10	86	69	25	0	5	1.09
5863155--5863194	15	2.8	15	88	7	57	20	0	5	75	0.99
5863316--5863362	3	16.7	3	78	12	55	65	2	2	29	1.15
5863314--5863344	16	1.9	16	100	0	62	70	0	0	29	0.87
5863311--5863362	19	2.7	19	85	11	70	67	1	1	28	1.12
5863455--5863526	3	24.0	3	97	0	135	66	1	0	31	1.00
5863695--5863770	29	2.6	30	74	4	82	46	25	5	23	1.73
5867937--5867983	3	15.7	3	100	0	94	68	0	0	31	0.90
5868277--5868321	23	2.0	23	100	0	90	44	17	15	22	1.86
5868226--5868369	71	2.0	73	91	4	238	38	22	14	24	1.92
5868300--5868511	48	4.5	48	84	5	288	34	24	13	26	1.93
5868300--5868512	93	2.3	94	89	4	322	34	24	13	26	1.93
5872558--5872588	14	2.2	14	100	0	62	35	16	6	41	1.74
5880325--5880356	3	10.7	3	100	0	64	68	0	0	31	0.90
5882384--5882419	2	18.0	2	88	0	54	55	0	0	44	0.99
5884069--5884119	15	3.2	16	73	15	52	54	0	1	43	1.11
5884819--5884859	17	2.4	17	91	4	64	26	0	0	73	0.84
5885100--5885167	30	2.3	30	82	2	84	55	1	0	42	1.08
5885154--5885179	12	2.2	12	100	0	52	65	0	0	34	0.93
5885519--5885557	20	2.1	19	85	9	53	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5887144--5887181	12	2.9	14	81	18	55	21	13	0	65	1.26
5890771--5890810	17	2.2	19	86	8	57	25	0	5	70	1.08
5890996--5891050	28	2.0	28	82	13	69	54	0	0	45	0.99
5892059--5892088	9	3.3	9	95	0	51	50	0	0	50	1.00
5897319--5897357	17	2.3	17	95	0	69	48	0	2	48	1.15
5897582--5897623	14	3.0	14	89	0	57	50	11	7	30	1.66
5897841--5897899	7	8.7	7	73	26	56	69	0	0	30	0.89
5897840--5897882	14	3.0	14	96	3	77	65	0	0	34	0.93
5898329--5898388	20	3.2	19	84	11	79	58	16	0	25	1.38
5898931--5898995	18	3.6	17	80	10	67	63	7	1	27	1.31
5898931--5899007	6	12.8	6	74	10	59	64	6	1	27	1.25
5898955--5899023	24	2.9	23	82	6	84	63	7	1	27	1.29
5898931--5899007	36	2.1	36	83	9	95	64	6	1	27	1.25
5899191--5899222	2	16.0	2	100	0	64	50	0	50	0	1.00
5901156--5901185	2	15.0	2	92	0	51	46	0	0	53	1.00
5905933--5905968	17	2.1	18	89	5	56	66	8	13	11	1.44
5910131--5910208	30	2.6	30	83	0	102	61	2	1	34	1.18
5911697--5911734	15	2.5	15	87	8	51	21	5	5	68	1.29
5911692--5911741	17	3.1	17	74	8	50	28	6	6	60	1.44
5913476--5913543	33	2.1	33	91	0	109	32	30	13	23	1.93
5915345--5915380	14	2.5	15	86	9	56	61	5	2	30	1.33
5916156--5916212	14	4.0	14	81	6	62	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5916177--5916212	16	2.1	16	90	10	54	33	0	0	66	0.92
5916209--5916252	20	2.2	20	88	8	63	47	2	0	50	1.13
5916215--5916253	20	1.9	21	94	5	71	48	0	0	51	1.00
5923839--5923874	17	2.1	17	94	0	63	63	0	2	33	1.08
5924136--5924164	13	2.1	14	93	6	51	34	3	13	48	1.60
5924447--5924483	2	18.5	2	94	0	65	48	2	0	48	1.15
5925660--5925712	26	2.0	26	92	0	88	39	15	9	35	1.79
5933647--5933752	48	2.2	48	91	3	169	51	8	14	25	1.70
5941799--5941840	19	2.2	20	91	4	68	64	0	0	35	0.94
5941799--5941852	19	2.8	20	81	18	62	62	1	0	35	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160