genome.fa.s334.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  12  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3675104--3675155	23	2.2	24	86	6	70	48	0	0	51	1.00
3677961--3678000	2	20.0	2	100	0	80	0	50	0	50	1.00
3685827--3685859	12	3.0	11	87	12	50	0	24	0	75	0.80
3689554--3689586	17	1.9	17	88	11	50	24	0	3	72	0.98
3689916--3689993	41	1.9	41	84	10	106	51	0	1	47	1.09
3690561--3690598	15	2.5	15	84	16	51	55	0	0	44	0.99
3691331--3691358	8	3.5	8	100	0	56	53	0	0	46	1.00
3696238--3696574	168	2.0	168	97	0	629	18	15	19	46	1.84
3700119--3700187	29	2.4	27	81	11	84	26	0	7	66	1.17
3701286--3701351	27	2.3	29	80	12	75	56	4	0	39	1.20
3701427--3701487	26	2.3	26	80	8	70	42	6	1	49	1.38
3701589--3701638	20	2.4	21	90	3	84	42	10	0	48	1.37
3715438--3715511	11	6.7	11	78	17	64	13	4	0	82	0.81
3715438--3715521	5	16.8	5	75	16	59	14	4	0	80	0.86
3715449--3715487	1	39.0	1	84	0	51	7	0	0	92	0.39
3715445--3715520	9	8.3	9	79	18	68	14	3	0	81	0.83
3715432--3715526	19	4.5	20	79	13	86	14	6	0	78	0.93
3715546--3715762	59	3.7	58	87	6	296	46	5	13	34	1.66
3715546--3715762	119	1.8	118	88	7	332	46	5	13	34	1.66
3715799--3715824	13	2.0	13	100	0	52	15	0	7	76	0.99
3718428--3718458	15	2.1	15	100	0	62	25	6	29	38	1.81
3729162--3729205	21	2.2	19	88	8	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3734427--3734464	20	1.9	20	88	0	58	42	5	18	34	1.73
3734758--3734813	28	2.0	27	83	10	69	46	0	3	50	1.19
3740138--3740177	18	2.2	18	90	0	62	45	0	20	35	1.51
3740257--3740288	15	2.1	15	94	0	55	28	3	37	31	1.73
3743237--3743286	26	2.0	25	84	4	64	52	6	6	36	1.51
3744040--3744116	19	4.2	19	73	15	63	49	0	0	50	1.00
3749762--3749807	16	2.6	19	80	16	62	34	4	0	60	1.16
3750922--3750962	6	6.8	6	91	0	55	41	17	41	0	1.49
3750922--3750967	18	2.6	18	82	0	56	39	15	45	0	1.46
3755107--3755178	30	2.4	30	76	2	74	58	2	0	38	1.13
3756427--3756514	43	2.0	44	82	8	108	37	1	2	59	1.18
3756448--3756522	22	3.5	22	75	14	66	41	1	1	56	1.16
3757470--3757501	15	2.1	15	94	0	55	50	0	3	46	1.17
3763311--3763352	20	2.0	21	86	9	59	28	2	11	57	1.47
3763720--3763756	18	2.1	18	94	0	65	48	10	10	29	1.72
3767357--3767399	20	2.2	20	83	8	52	2	16	2	79	0.95
3767742--3767790	21	2.3	20	76	10	53	71	2	4	22	1.13
3768831--3768882	26	2.0	27	84	3	70	36	1	3	57	1.28
3769886--3769910	2	12.5	2	100	0	50	52	48	0	0	1.00
3770330--3770409	30	2.7	28	81	16	90	36	8	6	48	1.59
3770444--3770507	29	2.2	29	75	5	67	53	4	7	34	1.51
3772731--3773211	161	3.0	161	87	0	683	38	8	6	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3772898--3772981	43	2.0	43	83	4	107	38	4	10	46	1.60
3773059--3773145	43	2.0	43	88	4	131	39	6	8	45	1.60
3773156--3773243	25	3.5	25	77	9	97	40	6	6	45	1.57
3773156--3773241	26	3.4	25	80	6	93	41	6	6	44	1.58
3773210--3773272	31	2.0	31	87	0	90	47	7	7	36	1.62
3773159--3773338	82	2.2	82	86	2	245	42	6	6	44	1.55
3774819--3774846	2	14.0	2	100	0	56	50	0	0	50	1.00
3774843--3774880	17	2.5	15	87	12	51	28	26	2	42	1.69
3776267--3776300	13	2.6	13	85	0	50	35	11	0	52	1.38
3816174--3816245	16	4.6	15	73	13	56	43	1	2	52	1.24
3816257--3816302	22	2.1	22	88	11	69	43	0	0	56	0.99
3816221--3816323	48	2.0	52	83	9	133	41	1	2	53	1.27
3816460--3816538	11	7.2	11	75	21	67	59	5	1	34	1.27
3816493--3816540	12	3.9	12	82	17	55	56	6	2	35	1.36
3837653--3837734	30	2.8	28	85	7	110	39	8	2	50	1.46
3837785--3837830	22	2.1	22	84	4	58	60	2	10	26	1.41
3852554--3852627	37	2.0	37	82	10	89	44	2	4	48	1.35
3855998--3856034	19	1.9	19	88	0	56	54	5	0	40	1.24
3857371--3857445	32	2.4	31	86	2	105	33	9	13	44	1.76
3858630--3858660	2	15.5	2	100	0	62	51	0	0	48	1.00
3861821--3861867	22	2.1	22	96	0	85	4	14	4	76	1.09
3862216--3862249	13	2.6	14	86	13	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3862407--3862500	42	2.2	45	81	16	119	46	0	2	51	1.13
3862694--3862731	19	2.0	20	90	10	62	34	0	0	65	0.93
3863184--3863214	2	15.5	2	93	0	53	3	51	0	45	1.17
3863309--3863343	18	1.9	18	88	0	52	5	8	54	31	1.54
3863696--3863724	15	1.9	15	100	0	58	20	3	62	13	1.46
3864014--3864055	3	14.0	3	84	0	57	4	2	59	33	1.31
3869111--3869378	135	2.0	135	84	3	351	40	9	16	33	1.82
3873088--3873124	2	18.5	2	100	0	74	51	0	48	0	1.00
3875219--3875259	2	21.5	2	85	9	59	56	0	43	0	0.99
3877843--3877874	2	16.0	2	93	0	55	50	3	0	46	1.17
3879600--3879625	3	8.7	3	100	0	52	0	34	0	65	0.93
3885032--3885063	16	2.0	16	93	0	55	59	0	15	25	1.36
3884985--3885116	50	2.6	52	82	4	160	45	3	19	31	1.68
3885745--3885834	25	3.6	25	83	5	103	43	7	27	21	1.80
3885749--3885812	24	2.6	25	90	5	103	40	9	32	17	1.81
3885729--3885817	25	3.6	24	77	10	90	41	7	31	19	1.80
3886121--3886225	52	2.0	52	83	3	131	46	7	17	28	1.75
3886630--3886666	12	2.9	13	84	15	51	29	0	0	70	0.88
3886617--3886658	12	3.6	12	78	18	52	33	0	0	66	0.92
3890208--3890239	11	2.9	11	100	0	64	28	0	0	71	0.86
3890208--3890252	22	2.0	22	83	8	56	26	4	2	66	1.22
3895798--3895858	27	2.2	27	83	13	72	8	8	3	80	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3895795--3895857	24	2.7	22	76	13	63	9	7	3	79	1.04
3912832--3912904	29	2.5	29	84	8	96	50	0	5	43	1.25
3918220--3918302	27	3.0	27	83	10	89	50	1	2	45	1.22
3918539--3918591	20	2.7	20	77	11	56	33	9	0	56	1.32
3918558--3918609	22	2.4	23	81	12	65	38	11	1	48	1.51
3918565--3918609	22	2.1	22	88	8	67	37	13	2	46	1.55
3924501--3924545	23	2.0	23	86	8	65	53	0	8	37	1.32
3925435--3925487	21	2.5	21	79	11	54	41	1	0	56	1.10
3925447--3925488	21	2.0	21	86	9	59	42	2	0	54	1.13
3926314--3926353	19	2.1	19	90	4	62	30	2	2	65	1.19
3926453--3926507	27	2.1	26	83	10	67	61	0	5	32	1.19
3942491--3942681	63	2.8	68	82	8	239	33	16	23	27	1.95
3942917--3942962	3	15.3	3	100	0	92	67	0	0	32	0.91
3953807--3953856	22	2.3	21	83	10	64	40	4	2	54	1.31
3954015--3954084	35	2.1	32	84	7	86	40	0	0	60	0.97
3954512--3954581	35	2.0	35	100	0	140	40	20	2	37	1.67
3954512--3954569	20	3.2	20	62	23	54	39	17	1	41	1.59
3955831--3955866	17	2.1	18	94	5	65	47	0	0	52	1.00
3956001--3956026	2	13.0	2	100	0	52	50	0	0	50	1.00
3958778--3958813	17	2.1	18	94	5	65	47	0	0	52	1.00
3960431--3960476	16	2.8	17	75	18	53	54	2	0	43	1.12
3960992--3961016	10	2.5	10	100	0	50	80	12	0	8	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3961136--3961238	49	2.1	49	87	0	143	38	14	13	33	1.85
3972673--3972717	23	2.0	23	90	0	72	17	26	26	28	1.98
3973414--3973452	20	2.1	19	85	9	53	25	10	20	43	1.83
3989979--3990013	6	5.8	6	100	0	70	34	48	0	17	1.47
3989980--3990019	18	2.2	18	90	0	62	37	47	2	12	1.55
3990859--3990884	4	6.5	4	100	0	52	50	0	0	50	1.00
3995267--3995327	30	2.0	30	90	0	95	44	1	9	44	1.47
3996111--3996157	12	3.9	12	81	8	60	61	2	0	36	1.08
3996088--3996189	35	2.8	35	74	21	93	68	2	0	28	1.04
3999678--3999731	26	2.1	26	96	0	99	51	31	3	12	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160