genome.fa.s334.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  110  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20870150--20870595	120	3.8	117	82	7	510	34	10	6	47	1.65
20870198--20870595	58	6.8	58	83	6	441	33	10	7	48	1.65
20870149--20870595	178	2.5	174	82	8	510	34	10	6	47	1.65
20872652--20872684	12	2.8	12	100	0	66	18	0	42	39	1.50
20873870--20873961	34	2.7	34	78	9	89	35	9	21	32	1.86
20873947--20874008	17	3.6	17	80	8	72	38	11	24	25	1.88
20873938--20874059	34	3.6	33	74	1	100	40	13	17	28	1.87
20875372--20875405	14	2.4	15	90	9	54	14	5	0	79	0.91
20875349--20875421	38	1.9	37	83	2	92	10	8	1	79	0.99
20879013--20879051	19	2.1	18	85	9	51	66	0	2	30	1.05
20879789--20879828	19	2.1	19	86	9	55	37	2	5	55	1.35
20880493--20880528	14	2.6	14	86	13	56	52	0	0	47	1.00
20882577--20882636	29	2.1	29	81	6	68	53	0	0	46	1.00
20882749--20882817	33	2.2	33	84	10	90	46	2	0	50	1.16
20884802--20884907	34	3.2	34	69	10	101	59	5	4	30	1.41
20884797--20884898	22	4.7	23	68	24	69	59	5	2	31	1.36
20884819--20884877	26	2.4	22	78	16	55	57	6	3	32	1.41
20888128--20888192	26	2.5	26	80	7	69	41	0	1	56	1.08
20888413--20888440	14	2.0	14	100	0	56	78	0	0	21	0.75
20889421--20889919	42	12.2	42	77	6	336	44	15	13	27	1.83
20889551--20889646	34	2.8	34	82	6	131	41	16	16	25	1.89
20889616--20889879	85	3.1	83	83	5	323	44	14	13	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20890934--20890966	16	2.0	17	88	5	50	9	3	3	84	0.82
20891639--20891673	16	2.2	16	100	0	70	42	22	11	22	1.85
20897289--20897387	47	2.2	44	78	7	108	26	11	8	54	1.63
20898014--20898050	5	7.4	5	100	0	74	81	0	0	18	0.70
20900599--20900628	14	2.1	14	100	0	60	33	13	16	36	1.88
20905757--20905800	10	4.4	10	85	0	61	68	2	29	0	1.02
20907026--20907286	130	2.0	132	94	3	465	23	10	10	55	1.65
20909302--20909336	18	1.9	18	88	11	54	17	0	14	68	1.21
20909717--20909776	20	3.0	20	75	15	61	20	0	10	70	1.16
20915394--20915433	13	3.0	14	82	10	57	42	7	7	42	1.61
20915553--20915590	17	2.2	18	85	4	51	18	2	31	47	1.62
20915598--20915642	7	6.7	7	80	10	58	15	0	37	46	1.46
20915553--20915642	12	7.2	13	71	17	57	17	1	33	47	1.55
20915676--20915720	24	2.0	22	82	8	54	20	0	35	44	1.51
20915696--20915755	17	3.5	17	73	6	50	16	3	38	41	1.65
20916764--20916804	19	2.2	19	90	0	64	9	21	4	63	1.44
20917803--20918044	124	1.9	125	87	5	357	35	14	14	35	1.87
20917825--20918078	124	2.0	123	81	11	297	35	14	13	35	1.86
20918088--20918461	200	1.9	199	83	7	497	33	13	12	39	1.83
20919655--20919696	18	2.3	18	87	0	57	33	14	21	30	1.93
20919665--20919699	18	1.9	18	94	0	61	34	17	17	31	1.93
20919714--20919781	30	2.3	30	84	0	91	32	13	22	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20919736--20919910	51	3.4	49	79	8	154	34	15	21	28	1.94
20919955--20920153	42	4.9	42	73	11	121	37	11	17	34	1.85
20920216--20920315	42	2.4	41	83	1	128	39	13	18	30	1.88
20921956--20922337	212	1.8	205	83	10	497	48	7	10	32	1.66
20923258--20923407	7	22.3	7	68	13	57	20	1	33	44	1.60
20923349--20923394	13	3.4	13	87	6	65	21	0	34	43	1.53
20925200--20925249	20	2.5	21	74	9	59	30	14	10	46	1.77
20926290--20926398	35	3.2	34	75	12	91	41	11	15	32	1.82
20928663--20928689	7	3.9	7	100	0	54	0	14	11	74	1.08
20931348--20931424	25	3.1	25	98	0	145	50	10	11	27	1.71
20932064--20932098	18	2.1	18	89	10	56	0	14	0	85	0.59
20932064--20932098	17	2.1	16	89	5	52	0	14	0	85	0.59
20932552--20932702	7	22.4	7	72	11	120	17	1	37	44	1.57
20932550--20932693	13	11.3	13	68	14	59	16	1	38	43	1.57
20932582--20932700	34	3.6	34	83	8	138	16	0	38	43	1.54
20932550--20932702	27	5.7	26	74	8	121	16	1	37	43	1.57
20932589--20932708	13	8.9	14	73	14	76	18	0	37	44	1.50
20932552--20932702	20	7.5	21	73	11	120	17	1	37	44	1.57
20946276--20946314	11	3.2	12	85	10	53	0	12	0	87	0.55
20946283--20946314	13	2.4	14	94	5	57	0	9	0	90	0.45
20947107--20947149	17	2.5	17	80	3	50	6	16	0	76	0.99
20949651--20949741	37	2.5	37	86	10	118	29	6	21	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20953647--20953701	19	2.8	20	75	10	60	7	20	3	69	1.28
20954794--20954862	29	2.4	28	83	9	84	4	0	14	81	0.84
20954820--20954865	11	4.3	11	84	13	60	0	0	15	84	0.62
20954815--20954865	16	3.2	16	86	5	68	0	0	17	82	0.67
20954795--20954865	27	2.6	27	84	8	83	4	0	15	80	0.86
20955115--20955166	22	2.4	22	90	0	77	34	15	19	30	1.93
20955506--20955653	50	3.0	50	82	2	163	34	11	15	38	1.84
20955620--20955800	37	4.9	37	81	5	204	35	18	15	30	1.92
20955808--20955890	37	2.2	37	87	4	114	36	20	13	30	1.91
20955719--20955983	87	3.0	88	87	2	383	34	17	13	34	1.89
20956914--20956961	1	48.0	1	78	0	51	4	2	4	89	0.64
20956906--20956961	11	5.2	11	80	10	62	7	1	3	87	0.72
20956906--20956961	10	5.6	10	83	12	62	7	1	3	87	0.72
20965758--20965790	16	2.1	16	88	5	50	42	33	0	24	1.55
20967608--20967635	3	9.3	3	100	0	56	32	0	0	67	0.91
20967889--20967914	10	2.6	10	100	0	52	53	0	0	46	1.00
20972176--20972226	25	2.0	25	96	0	93	49	3	15	31	1.63
20972882--20972911	5	6.0	5	100	0	60	0	20	0	80	0.72
20973186--20973213	14	2.0	14	100	0	56	42	7	7	42	1.59
20973212--20973236	9	2.8	9	100	0	50	40	12	24	24	1.88
20973384--20973622	7	34.6	7	68	13	129	15	1	36	46	1.54
20973356--20973611	7	39.0	6	67	21	67	16	1	35	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20973405--20973631	124	1.8	124	92	1	384	16	1	36	45	1.56
20973530--20973622	27	3.4	28	74	15	95	12	1	38	47	1.49
20973587--20973717	57	2.3	57	80	6	140	17	3	32	45	1.66
20973706--20973743	19	2.0	19	85	10	51	15	0	36	47	1.46
20973755--20973816	17	3.6	17	86	0	79	24	8	27	40	1.83
20980207--20980272	34	1.9	34	84	0	87	36	18	10	34	1.85
20980873--20981263	212	1.9	203	83	7	500	36	12	9	41	1.76
20980873--20981263	104	3.8	103	83	6	452	36	12	9	41	1.76
20981314--20981351	13	2.7	14	88	8	51	65	0	2	31	1.06
20982339--20982376	17	2.2	18	90	4	60	73	0	5	21	1.02
20982350--20982412	17	3.6	17	77	12	56	69	0	7	22	1.13
20983269--20983331	22	2.8	23	80	4	58	28	12	25	33	1.92
20989400--20989843	104	4.3	104	77	10	381	39	12	7	40	1.72
20989400--20989843	103	4.3	103	77	8	404	39	12	7	40	1.72
20991069--20991106	17	2.2	18	90	4	60	73	0	5	21	1.02
20992494--20992752	42	6.1	42	74	7	202	28	13	15	43	1.84
20994524--20994605	7	11.4	7	70	23	55	15	1	3	79	0.94
20994529--20994605	29	2.6	29	76	17	79	15	1	3	79	0.95
20994531--20994605	15	5.1	14	78	13	73	14	1	4	80	0.93
21020131--21020231	50	2.0	50	96	0	184	48	6	20	23	1.74
21021530--21021590	2	32.5	2	77	12	58	47	3	0	49	1.18
21021955--21022028	30	2.4	30	76	10	78	47	5	6	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21022387--21022425	21	1.9	19	90	10	60	25	10	0	64	1.25
21022395--21022436	21	2.0	21	86	9	59	28	9	2	59	1.41
21022720--21022744	2	12.5	2	100	0	50	48	0	0	52	1.00
21024452--21024501	25	2.0	25	84	7	66	56	2	10	32	1.44
21027975--21028025	3	17.0	3	95	0	93	35	0	0	64	0.94
21030876--21030905	11	2.6	11	94	5	51	60	0	0	40	0.97
21031157--21031222	29	2.3	29	86	0	87	28	10	10	50	1.70
21032175--21032246	6	11.8	6	73	19	60	66	1	30	1	1.08
21032175--21032273	42	2.3	43	85	10	125	65	2	29	3	1.18
21032885--21033217	169	2.0	169	91	1	542	27	20	15	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160