genome.fa.s334.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  84  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16225501--16226632	588	1.9	590	86	2	1596	25	26	24	22	2.00
16226639--16229708	865	3.6	859	89	1	4488	26	23	23	26	2.00
16230454--16230506	26	2.0	26	88	0	79	26	15	26	32	1.95
16231342--16231394	26	2.0	26	88	0	79	28	16	24	30	1.97
16231921--16231973	26	2.0	26	92	0	88	28	18	24	28	1.98
16232810--16232862	26	2.0	26	96	0	97	26	18	26	28	1.98
16231501--16244446	889	14.5	886	81	7	13875	25	24	24	25	2.00
16233688--16233740	26	2.0	26	88	0	79	28	20	22	28	1.99
16234577--16234629	26	2.0	26	100	0	106	26	20	26	26	1.99
16235477--16235529	26	2.0	26	88	0	79	24	20	24	30	1.99
16237228--16237280	26	2.0	26	85	0	70	30	18	20	30	1.97
16238121--16238170	26	1.9	26	87	0	73	26	20	26	28	1.99
16238305--16238357	26	2.0	26	88	0	79	24	20	26	28	1.99
16238092--16238505	184	2.2	184	82	2	490	19	27	29	22	1.98
16240059--16240108	26	1.9	26	100	0	100	28	20	28	24	1.99
16238276--16244446	861	7.1	884	84	4	7541	25	24	24	26	2.00
16240949--16241001	26	2.0	26	92	0	88	28	15	24	32	1.95
16246436--16246488	26	2.0	26	92	0	88	28	18	24	28	1.98
16245084--16249082	863	4.6	884	84	5	4983	25	24	24	25	2.00
16247992--16248027	12	3.1	12	92	4	56	36	16	30	16	1.91
16251073--16251125	26	2.0	26	88	0	79	26	22	22	28	1.99
16249721--16251840	887	2.4	887	87	2	3041	25	23	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16251314--16252375	536	2.0	535	90	2	1693	25	22	22	29	1.99
16251848--16253918	698	3.0	699	90	1	3200	26	24	22	26	2.00
16255646--16255698	26	2.0	26	92	0	88	26	22	24	26	2.00
16257398--16257450	26	2.0	26	88	0	79	24	22	26	26	2.00
16259150--16259202	26	2.0	26	88	0	79	24	22	26	26	2.00
16260274--16260326	26	2.0	26	100	0	106	26	20	26	26	1.99
16260217--16262706	860	2.9	862	84	7	3225	25	23	24	27	2.00
16264191--16264243	26	2.0	26	92	0	88	28	18	24	28	1.98
16265745--16265780	12	3.1	12	92	4	56	36	16	30	16	1.91
16262841--16266859	878	4.6	862	85	4	4925	25	24	24	25	2.00
16268825--16268877	26	2.0	26	88	0	79	26	22	22	28	1.99
16267473--16269592	887	2.4	886	86	2	3010	25	23	23	26	2.00
16269066--16270127	536	2.0	535	92	2	1765	25	21	23	29	1.99
16269601--16278170	864	9.8	877	84	6	10294	25	23	24	26	2.00
16272013--16272065	26	2.0	26	92	7	90	28	20	22	28	1.99
16273739--16273794	26	2.2	26	90	0	85	30	19	21	28	1.98
16274636--16274688	26	2.0	26	92	0	88	28	18	24	28	1.98
16277270--16277320	26	2.0	26	96	0	93	29	19	25	25	1.99
16277434--16278866	704	2.0	704	88	1	2088	26	22	23	27	2.00
16278850--16278900	26	2.0	26	88	0	75	29	11	29	29	1.92
16279738--16279789	26	2.0	26	92	0	86	28	17	25	28	1.97
16280629--16280680	26	2.0	26	84	0	68	28	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16278115--16282950	891	5.5	891	89	2	7095	25	24	24	26	2.00
16281487--16281537	26	2.0	26	96	0	93	27	17	27	27	1.98
16282376--16282427	26	2.0	26	84	0	68	32	17	21	28	1.96
16283505--16283555	26	2.0	26	88	7	77	31	21	23	23	1.98
16284393--16284445	26	2.0	26	88	0	79	26	22	26	24	2.00
16287928--16287980	26	2.0	26	92	0	88	30	16	22	30	1.96
16288817--16288869	26	2.0	26	96	0	97	26	18	28	26	1.98
16282952--16290618	888	8.7	890	87	2	10287	25	23	24	26	2.00
16289706--16289758	26	2.0	26	92	7	90	30	16	22	30	1.96
16292155--16292207	26	2.0	26	92	0	88	28	18	26	26	1.98
16293907--16293959	26	2.0	26	92	7	90	28	18	26	26	1.98
16294788--16294840	26	2.0	26	96	0	97	26	16	24	32	1.97
16291291--16296790	881	6.2	881	84	5	6848	25	24	24	25	2.00
16295678--16295730	26	2.0	26	100	0	106	26	20	26	26	1.99
16296550--16296599	26	1.9	26	91	0	82	26	18	30	26	1.98
16296576--16296946	159	2.3	159	82	4	417	20	26	30	22	1.98
16301456--16301508	26	2.0	26	100	0	106	26	16	26	30	1.97
16302349--16302400	26	2.0	26	96	0	95	26	17	26	28	1.97
16303240--16303292	26	2.0	26	100	0	106	26	20	26	26	1.99
16304123--16304174	26	2.0	26	96	0	95	26	17	26	28	1.97
16300733--16307547	882	7.7	880	86	4	8700	25	23	24	26	2.00
16308404--16308456	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16309283--16309335	26	2.0	26	85	0	70	30	15	20	33	1.93
16307556--16314618	878	8.1	875	87	3	9649	25	24	24	26	2.00
16311887--16311939	26	2.0	26	96	0	97	26	22	24	26	2.00
16312763--16312815	26	2.0	26	96	0	97	26	18	26	28	1.98
16314509--16314561	26	2.0	26	92	0	88	26	16	26	30	1.97
16315317--16315369	26	2.0	26	92	0	88	28	20	22	28	1.99
16316174--16316224	26	2.0	26	88	0	75	33	17	21	27	1.96
16317952--16318004	26	2.0	26	92	0	88	28	18	24	28	1.98
16315555--16318865	889	3.7	887	87	1	4847	25	23	24	26	2.00
16319200--16320557	699	1.9	699	87	0	1975	26	25	24	23	2.00
16321191--16321241	26	2.0	26	92	0	84	27	15	25	31	1.96
16322068--16322120	26	2.0	26	88	0	79	28	18	22	30	1.98
16319899--16327426	889	8.5	887	86	2	9965	25	24	24	25	2.00
16322957--16323009	26	2.0	26	96	0	97	26	18	26	28	1.98
16323847--16323899	26	2.0	26	92	0	88	28	15	24	32	1.95
16325619--16325670	26	2.0	26	92	0	86	28	17	25	28	1.97
16325848--16325872	12	2.1	12	100	0	50	16	28	56	0	1.41
16329088--16329139	26	2.0	26	88	0	77	28	15	25	30	1.96
16329783--16329813	12	2.6	12	100	0	62	38	19	29	12	1.89
16330871--16330922	26	2.0	26	92	0	86	28	17	25	28	1.97
16332362--16332415	26	2.0	27	89	3	83	27	22	24	25	2.00
16333021--16333070	26	1.9	26	91	0	82	30	22	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16331976--16333242	658	1.9	658	87	2	1882	26	26	23	22	2.00
16333914--16333966	26	2.0	26	100	0	106	26	20	26	26	1.99
16335339--16335722	159	2.4	159	83	4	472	21	28	27	21	1.99
16336389--16336446	26	2.2	27	90	3	91	27	18	22	31	1.97
16334216--16340443	884	7.1	861	79	8	6220	25	24	24	25	2.00
16338135--16338186	26	2.0	26	84	0	68	28	17	25	28	1.97
16339887--16339938	26	2.0	26	88	0	77	30	15	26	26	1.96
16342428--16342480	26	2.0	26	88	0	79	28	16	24	30	1.97
16340830--16346411	840	6.4	882	83	6	6621	25	23	24	26	2.00
16345031--16345083	26	2.0	26	92	0	88	26	20	24	28	1.99
16343418--16346411	883	3.4	836	81	8	3162	25	23	24	26	2.00
16346699--16346751	26	2.0	26	92	0	88	26	20	24	28	1.99
16347582--16347640	26	2.3	26	85	5	86	27	18	27	27	1.98
16349366--16349418	26	2.0	26	100	0	106	26	20	26	26	1.99
16346410--16358225	890	13.4	888	87	2	15353	25	24	24	25	2.00
16352910--16352960	26	2.0	26	88	0	75	31	17	23	27	1.97
16356428--16356483	26	2.2	26	93	0	94	28	17	19	33	1.95
16360648--16360700	26	2.0	26	96	0	97	26	18	26	28	1.98
16358902--16378921	890	22.4	885	77	9	13899	25	23	24	26	2.00
16362401--16362452	26	2.0	26	96	0	95	26	21	21	30	1.98
16361536--16365285	892	4.2	885	87	3	4975	25	24	24	25	2.00
16365042--16365094	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16365068--16365459	159	2.5	158	84	4	468	22	28	29	18	1.98
16366965--16367041	26	3.0	26	100	0	154	27	19	25	27	1.99
16367742--16367767	9	2.9	9	100	0	52	0	69	19	11	1.18
16367891--16367941	26	2.0	24	85	7	66	27	17	21	33	1.96
16368752--16368802	26	2.0	26	96	0	93	27	17	25	29	1.98
16368759--16378921	887	11.4	880	84	4	12342	25	23	24	26	2.00
16369630--16369682	26	2.0	26	92	7	90	26	16	26	30	1.97
16370514--16370566	26	2.0	26	92	0	88	28	18	24	28	1.98
16371400--16371452	26	2.0	26	88	0	79	28	20	22	28	1.99
16365227--16378921	878	15.4	887	85	4	16897	25	23	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160