genome.fa.s334.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  95  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17973731--17974090	161	2.2	161	80	6	399	41	15	10	33	1.80
17978263--17978309	24	2.0	24	86	0	67	61	14	8	14	1.55
17979443--17979474	3	10.7	3	93	0	55	71	0	0	28	0.86
17979443--17979496	9	6.2	9	78	8	58	72	0	1	25	0.95
17979710--17979750	20	2.0	20	86	9	57	58	2	2	36	1.24
17998777--17998838	4	15.5	4	74	12	56	70	0	4	24	1.06
17999993--18000117	34	3.7	34	77	8	121	43	12	7	36	1.71
18002086--18002128	2	21.5	2	90	0	68	46	2	2	48	1.27
18002787--18002812	5	5.2	5	100	0	52	80	0	0	19	0.71
18007772--18007818	2	23.5	2	100	0	94	51	0	48	0	1.00
18010946--18010983	12	2.9	13	88	7	51	0	47	2	50	1.15
18010964--18011022	30	2.0	30	86	0	82	13	52	0	33	1.41
18010964--18011019	6	9.3	6	88	7	60	12	53	0	33	1.39
18013577--18013638	31	2.0	31	90	0	97	32	4	19	43	1.72
18013708--18013796	44	2.0	44	86	4	126	41	7	4	46	1.53
18021392--18022557	230	5.0	235	81	4	1244	33	9	11	44	1.74
18021392--18022558	457	2.5	457	80	4	1301	33	9	11	44	1.74
18028365--18029083	205	3.5	203	80	4	681	35	12	10	42	1.76
18029855--18030063	101	2.1	102	86	5	291	37	6	15	40	1.73
18035057--18035093	15	2.3	17	86	9	51	16	18	5	59	1.55
18035450--18035625	94	1.9	94	84	2	237	27	15	20	36	1.93
18035861--18035906	23	2.0	23	83	8	58	73	6	8	10	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18047104--18047203	51	2.0	51	84	4	130	29	17	15	39	1.89
18047515--18047820	62	5.2	60	73	15	217	42	14	14	29	1.85
18047573--18047776	112	1.8	112	81	9	254	42	11	16	29	1.83
18047510--18047838	174	1.9	174	83	5	432	42	14	15	28	1.85
18048136--18048183	24	2.0	24	84	8	62	16	22	2	58	1.49
18054021--18054062	21	2.0	21	90	0	66	16	7	35	40	1.76
18055215--18056211	322	3.1	321	83	3	1114	32	10	14	42	1.80
18055290--18056211	161	5.8	161	79	2	860	32	10	14	41	1.80
18056214--18057148	161	5.8	159	81	5	956	31	10	15	42	1.80
18056214--18057166	322	3.0	321	85	2	1184	31	10	15	42	1.80
18059184--18059218	12	2.8	12	86	4	52	82	0	8	8	0.83
18066171--18066210	19	2.1	19	86	9	55	60	0	0	40	0.97
18067758--18067782	2	12.5	2	100	0	50	52	0	0	48	1.00
18067780--18067826	19	2.5	19	77	19	53	63	10	0	25	1.26
18072450--18072502	27	2.0	27	88	0	79	52	1	0	45	1.11
18079139--18079204	30	2.2	30	88	0	96	54	1	12	31	1.46
18079668--18079695	14	2.0	14	100	0	56	7	35	7	50	1.57
18090656--18090694	13	3.0	13	88	0	51	76	2	0	20	0.90
18099203--18099244	19	2.2	19	83	8	50	45	2	4	47	1.36
18114931--18114979	3	16.3	3	95	0	80	34	4	32	28	1.76
18114978--18115010	3	11.7	3	87	12	52	69	0	0	30	0.88
18116058--18116091	15	2.3	15	85	5	52	61	0	5	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18116333--18116357	2	12.5	2	100	0	50	52	0	0	48	1.00
18116837--18116888	15	3.5	15	75	17	54	50	11	0	38	1.39
18117525--18117586	25	2.4	26	84	10	83	46	0	1	51	1.10
18117523--18117561	21	1.9	20	89	5	60	46	0	0	53	1.00
18117523--18117604	20	4.1	19	73	16	60	47	0	2	50	1.14
18118264--18118298	17	2.1	17	94	0	61	51	2	0	45	1.16
18118263--18118305	16	2.6	17	85	7	54	55	2	0	41	1.12
18119487--18119513	3	9.0	3	100	0	54	66	0	0	33	0.92
18120030--18120059	16	1.9	15	93	6	51	53	6	0	40	1.27
18124136--18124257	56	2.2	55	79	8	122	40	14	3	40	1.62
18124366--18124513	59	2.5	57	81	6	154	42	14	5	37	1.68
18124600--18124672	36	2.1	34	84	5	92	46	12	2	38	1.56
18135510--18135591	9	8.4	9	72	15	56	76	2	17	3	1.03
18135546--18135594	24	2.1	23	85	11	64	73	2	22	2	1.04
18137022--18137220	41	4.8	41	77	3	184	30	13	14	41	1.84
18137231--18137280	20	2.5	20	84	15	59	18	14	22	46	1.84
18137245--18137349	51	2.0	52	85	1	140	24	15	20	40	1.91
18137250--18137465	52	4.2	52	79	4	177	28	17	16	37	1.91
18137385--18137519	51	2.6	51	87	3	173	31	17	14	36	1.90
18137468--18137700	102	2.3	102	83	5	283	27	19	17	36	1.94
18137419--18137649	51	4.5	51	74	13	174	27	19	16	36	1.93
18137524--18137740	51	4.3	50	77	9	174	27	18	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18137530--18137796	51	5.3	50	76	10	161	29	18	17	34	1.94
18138307--18138579	116	2.4	116	94	0	474	32	22	14	30	1.94
18138581--18138671	22	4.1	22	80	2	67	31	27	14	26	1.95
18138634--18138737	22	4.7	22	75	4	102	36	22	11	29	1.89
18138641--18138737	44	2.2	43	83	8	124	37	21	10	30	1.87
18141152--18141207	26	2.1	27	86	3	78	46	44	0	8	1.34
18141219--18141318	13	7.6	13	69	12	62	41	34	2	23	1.66
18141474--18141499	13	2.0	13	100	0	52	38	0	0	61	0.96
18142365--18142403	16	2.4	16	86	0	60	74	0	5	20	1.01
18142367--18142395	8	3.6	8	100	0	58	79	0	0	20	0.74
18142435--18142481	17	2.8	17	90	3	69	76	0	17	6	0.98
18142435--18142481	8	5.8	8	82	5	58	76	0	17	6	0.98
18142517--18142621	25	4.2	25	84	4	131	29	11	9	49	1.70
18142517--18142621	50	2.1	50	87	3	149	29	11	9	49	1.70
18143629--18143764	35	3.9	34	75	5	119	33	22	10	33	1.88
18152894--18152932	18	2.1	18	95	4	69	79	0	10	10	0.94
18153995--18154166	45	3.9	44	79	2	184	27	11	16	44	1.82
18155233--18155270	13	2.9	13	88	7	51	18	0	2	78	0.86
18155233--18155269	17	2.2	17	95	0	65	18	0	2	78	0.87
18156771--18156828	31	1.9	31	96	3	109	50	10	8	31	1.67
18157600--18157645	16	2.8	16	93	3	74	86	2	6	4	0.75
18158049--18158120	25	2.7	26	81	12	76	73	1	20	4	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18159599--18159789	41	4.6	41	75	14	151	28	15	13	42	1.84
18159586--18159800	82	2.6	83	77	4	209	28	15	13	42	1.84
18159854--18159981	51	2.5	51	74	5	125	29	16	18	35	1.93
18160064--18160196	51	2.6	51	83	4	162	31	16	14	37	1.89
18160107--18160220	51	2.2	50	80	6	122	35	20	11	32	1.88
18160831--18160905	31	2.4	31	80	14	84	40	12	9	38	1.75
18160854--18160950	40	2.4	41	81	5	117	40	9	9	41	1.69
18160991--18161056	22	3.0	21	74	20	64	27	24	15	33	1.95
18161072--18161211	54	2.6	54	76	6	140	37	19	7	35	1.79
18163683--18163763	7	12.4	7	72	15	66	48	35	0	16	1.46
18163679--18163732	20	2.7	20	88	5	74	44	37	0	18	1.50
18163685--18163770	13	6.7	13	68	10	52	47	36	0	16	1.47
18167839--18167877	19	2.0	19	85	5	51	2	12	2	82	0.89
18168426--18168479	27	2.0	27	100	0	108	40	0	7	51	1.30
18169300--18169329	14	2.1	14	93	0	51	60	13	3	23	1.48
18170581--18170618	12	3.4	11	86	13	51	13	0	2	84	0.73
18171012--18171052	17	2.4	18	80	11	52	48	2	2	46	1.28
18175798--18175983	40	4.7	38	73	7	158	33	19	14	32	1.92
18175736--18175983	78	3.2	75	83	8	270	33	18	14	34	1.91
18175900--18176240	171	2.0	171	86	0	475	34	17	10	37	1.84
18176215--18176265	19	2.7	19	84	0	66	17	13	7	60	1.56
18176255--18176471	40	5.3	39	71	17	147	32	19	11	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18176259--18176488	126	1.8	125	80	9	279	33	20	10	35	1.87
18177148--18177251	30	3.7	29	64	23	69	36	15	12	35	1.85
18177153--18177294	53	2.6	53	86	6	196	34	16	13	35	1.87
18177233--18177315	23	3.8	23	75	20	81	33	18	15	32	1.92
18177233--18177335	43	2.5	42	81	7	111	34	19	13	32	1.91
18177207--18177383	96	1.8	96	86	4	259	34	17	14	33	1.90
18177199--18177430	96	2.4	96	80	5	256	34	16	15	33	1.90
18177457--18177593	23	6.3	23	72	12	112	29	12	16	40	1.85
18177451--18177601	43	3.5	43	92	0	239	28	12	17	41	1.86
18177450--18177556	20	5.1	20	76	11	106	27	12	18	42	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160