genome.fa.s334.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  140  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26314289--26314328	19	2.1	19	100	0	80	60	15	15	10	1.60
26334856--26334930	29	2.6	28	79	8	78	54	1	2	41	1.23
26344698--26344733	17	2.1	17	100	0	72	27	11	11	50	1.72
26345428--26345455	2	14.0	2	100	0	56	50	0	0	50	1.00
26346081--26346139	31	1.9	31	85	0	82	49	13	0	37	1.43
26346879--26346908	15	2.0	15	100	0	60	26	13	20	40	1.89
26354177--26354214	18	2.1	18	85	9	51	23	0	0	76	0.79
26357408--26357469	23	2.5	25	79	10	74	24	4	3	67	1.25
26357890--26358070	84	2.2	83	84	6	231	47	30	2	18	1.63
26358131--26358164	15	2.3	15	89	0	50	50	32	0	17	1.47
26358138--26358193	15	3.7	15	84	11	62	53	26	0	19	1.45
26365727--26365774	21	2.3	20	72	13	53	43	0	6	50	1.27
26366168--26366247	17	4.7	17	80	8	83	33	17	22	26	1.96
26370887--26370915	15	2.0	15	93	6	51	41	24	0	34	1.55
26372222--26372255	17	2.0	17	94	0	59	55	0	0	44	0.99
26372257--26372367	32	3.4	33	75	12	113	40	1	8	49	1.43
26376257--26376281	11	2.3	11	100	0	50	36	0	0	64	0.94
26383021--26383480	229	2.0	230	96	0	841	31	9	12	46	1.74
26389165--26389207	22	2.0	22	85	0	59	44	0	2	53	1.13
26389185--26389229	18	2.4	19	85	7	65	37	2	4	55	1.32
26411294--26411319	4	6.5	4	100	0	52	73	0	26	0	0.84
26411801--26411898	40	2.5	40	83	1	126	46	0	4	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26411868--26411903	18	2.0	18	94	0	63	47	0	2	50	1.15
26411963--26412012	19	2.7	19	78	6	59	62	0	0	38	0.96
26414254--26414297	18	2.4	18	100	0	88	38	6	18	36	1.77
26419839--26421784	333	5.9	332	85	2	2444	37	12	14	35	1.84
26427646--26427685	20	2.0	20	100	0	80	50	15	20	15	1.79
26435683--26435712	14	2.1	14	93	0	51	30	36	20	13	1.90
26438282--26438309	3	9.3	3	100	0	56	35	0	64	0	0.94
26440631--26440668	17	2.2	18	85	4	51	57	0	0	42	0.98
26441310--26441348	20	2.0	20	89	0	60	46	0	2	51	1.14
26441315--26441355	20	2.1	20	86	4	57	46	0	2	51	1.14
26441357--26441402	14	3.5	13	75	18	51	36	0	0	63	0.95
26441335--26441407	26	2.8	26	78	14	69	43	1	0	54	1.08
26441389--26441441	23	2.3	23	86	3	70	43	1	1	52	1.23
26444838--26444862	13	1.9	13	100	0	50	20	0	0	80	0.72
26444834--26444880	23	2.0	23	84	8	60	21	0	4	74	0.99
26444917--26444954	7	5.6	7	81	6	51	71	0	0	28	0.87
26444912--26444953	20	2.1	19	86	8	57	73	0	0	26	0.83
26445031--26445485	127	3.6	125	81	7	478	49	6	9	35	1.61
26445069--26445371	127	2.4	126	92	0	498	52	6	8	33	1.57
26445997--26446058	16	4.0	16	78	16	60	67	3	1	27	1.15
26457587--26457693	42	2.6	42	77	4	119	28	13	15	42	1.85
26457487--26457843	160	2.2	162	81	4	400	28	13	17	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26457689--26457843	43	3.6	42	79	2	166	26	14	16	42	1.86
26458665--26458702	19	2.0	20	89	5	60	18	2	2	76	1.02
26458743--26458772	15	2.0	15	93	0	51	76	0	0	23	0.78
26458828--26459343	122	4.2	121	79	7	408	49	7	8	35	1.61
26465197--26465436	134	1.8	130	84	5	329	37	4	15	41	1.68
26470609--26470673	33	2.1	28	80	20	85	63	16	6	13	1.50
26471228--26471260	2	16.5	2	100	0	66	51	0	0	48	1.00
26482787--26482814	6	4.7	6	100	0	56	17	50	17	14	1.79
26501043--26501093	25	2.2	24	82	10	61	45	1	7	45	1.44
26502980--26503029	22	2.3	21	80	6	64	16	2	28	54	1.53
26510853--26510901	25	2.0	25	84	8	64	46	4	8	40	1.52
26512573--26512607	15	2.2	16	90	5	54	45	22	2	28	1.67
26515442--26515595	82	1.9	83	82	11	201	68	3	15	11	1.33
26516863--26516931	21	3.2	21	83	2	75	36	7	17	39	1.77
26516955--26516992	20	1.9	20	88	0	58	39	13	18	28	1.88
26517321--26517780	84	5.5	83	78	8	395	25	12	18	43	1.85
26517321--26517780	40	11.1	41	77	10	363	25	12	18	43	1.85
26517321--26517703	43	9.1	44	78	7	269	25	12	18	43	1.85
26517320--26517763	124	3.5	124	78	7	459	25	12	18	43	1.86
26518747--26518798	25	2.2	22	90	10	77	19	0	3	76	0.93
26525214--26525265	19	2.7	19	94	5	88	19	26	13	40	1.88
26525394--26525589	55	3.6	53	76	9	178	21	21	13	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26525398--26525598	110	1.8	110	81	8	248	21	20	13	44	1.86
26525816--26525943	3	42.7	3	91	3	204	31	0	3	64	1.14
26526241--26526291	22	2.3	23	80	12	54	21	1	25	50	1.59
26526257--26526319	22	2.9	21	81	6	72	17	4	26	50	1.66
26526741--26526801	14	4.4	14	81	10	63	13	1	4	80	0.95
26526756--26526801	7	6.4	7	79	20	51	15	0	4	80	0.86
26526749--26526809	14	4.4	14	78	15	65	14	0	4	80	0.87
26532863--26532963	49	2.0	50	84	1	132	29	14	9	45	1.78
26550680--26550710	2	15.5	2	100	0	62	48	0	0	51	1.00
26552753--26552795	2	21.5	2	90	0	68	44	2	2	51	1.27
26566014--26566054	17	2.5	17	84	4	57	24	0	19	56	1.42
26567135--26567166	14	2.3	14	94	0	55	0	6	15	78	0.95
26567480--26567542	23	2.9	22	85	4	65	41	0	0	58	0.98
26575359--26575401	19	2.3	19	87	0	59	53	2	2	41	1.26
26580587--26580619	2	16.5	2	100	0	66	48	0	0	51	1.00
26581638--26581686	22	2.3	21	86	10	73	53	18	6	22	1.66
26581646--26581689	22	2.0	22	100	0	88	50	13	9	27	1.72
26581651--26581701	22	2.3	22	83	6	59	50	11	15	21	1.76
26582426--26582491	28	2.4	28	82	5	71	56	3	0	40	1.15
26583043--26583091	23	2.1	23	84	0	62	44	2	8	44	1.45
26583424--26583485	23	2.7	23	87	2	81	53	3	0	43	1.17
26592627--26592696	16	4.6	16	74	10	58	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26592624--26592672	24	2.0	24	84	7	64	40	0	0	59	0.98
26592632--26592690	16	3.9	16	78	10	61	45	0	0	54	0.99
26594154--26594251	44	2.2	44	89	1	144	52	10	4	33	1.54
26597580--26597623	22	2.0	22	90	0	70	34	11	11	43	1.77
26598003--26598037	18	1.9	18	88	0	52	22	14	25	37	1.92
26598387--26598430	22	2.0	22	100	0	88	36	13	27	22	1.92
26612714--26612738	8	3.1	8	100	0	50	36	0	52	12	1.39
26613016--26613066	25	2.0	25	96	0	93	21	27	11	39	1.88
26614454--26614502	15	3.5	14	72	27	50	51	0	2	46	1.12
26614646--26614698	26	2.0	28	88	7	83	52	1	0	45	1.11
26614806--26614836	2	16.0	2	93	6	55	51	0	0	48	1.00
26614908--26615110	101	2.0	101	100	0	406	39	19	20	20	1.93
26627722--26627875	75	2.0	77	92	2	258	35	3	11	49	1.57
26628260--26628305	19	2.5	19	85	3	58	65	2	2	30	1.16
26630118--26630155	3	12.7	3	100	0	76	31	0	0	68	0.90
26639362--26639389	2	14.0	2	100	0	56	50	0	0	50	1.00
26645357--26645390	12	2.8	12	91	8	52	26	2	0	70	1.01
26657200--26657261	32	1.9	32	83	6	81	24	14	8	53	1.68
26658876--26658936	24	2.6	23	85	12	79	16	1	3	78	0.96
26658874--26658918	13	3.5	13	75	25	51	13	2	6	77	1.05
26658883--26658934	11	4.6	11	78	9	52	15	0	3	80	0.85
26658883--26658931	19	2.7	18	82	17	57	14	0	4	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26658876--26658926	21	2.2	21	86	13	66	13	1	3	80	0.94
26664021--26664062	4	10.5	4	100	0	84	50	0	23	26	1.50
26668212--26668251	17	2.4	17	82	0	53	80	5	15	0	0.88
26671296--26671335	20	2.0	20	85	4	55	22	7	0	70	1.12
26671787--26671821	17	2.1	17	88	0	52	5	11	0	82	0.82
26675820--26675856	13	3.0	12	88	7	56	0	13	0	86	0.57
26675821--26675858	17	2.2	17	90	9	60	0	10	0	89	0.49
26675821--26675858	18	2.1	17	90	9	58	0	10	0	89	0.49
26679887--26679920	16	2.2	16	89	5	52	64	8	0	26	1.22
26690494--26690710	108	2.0	108	89	1	328	24	17	12	45	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160