genome.fa.s334.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  70  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14642921--14643160	130	1.8	130	83	3	313	37	16	16	29	1.91
14643110--14643272	41	3.8	41	74	13	139	39	15	16	28	1.89
14643167--14643229	22	3.0	22	69	19	62	44	17	12	25	1.84
14643211--14643778	41	13.8	42	75	10	381	38	11	17	32	1.86
14644913--14644950	16	2.5	15	87	12	51	2	13	0	84	0.73
14645286--14645336	13	3.8	13	78	14	59	1	21	0	76	0.88
14645318--14645356	21	1.9	21	89	5	62	5	15	2	76	1.06
14645537--14645583	21	2.2	21	85	7	60	2	14	2	80	0.89
14645862--14645937	18	4.1	18	91	5	125	36	0	11	51	1.39
14655696--14655752	12	4.8	12	73	18	57	56	0	0	43	0.99
14655696--14655743	24	2.0	24	95	0	87	52	0	0	47	1.00
14655737--14655805	18	4.2	17	75	17	74	55	2	1	40	1.24
14655895--14655965	26	2.8	25	87	8	99	49	1	1	47	1.18
14655895--14655965	25	2.8	26	89	4	101	49	1	1	47	1.18
14655892--14655957	15	4.5	16	70	24	56	48	1	1	48	1.20
14656083--14656117	14	2.5	14	95	0	61	34	22	2	40	1.69
14656250--14656289	21	1.9	21	85	10	55	20	5	20	55	1.62
14667118--14667156	3	13.7	3	89	10	64	28	0	0	71	0.86
14668984--14669028	15	3.1	15	83	6	65	20	4	0	75	0.97
14675925--14676125	91	2.2	91	89	0	294	43	15	5	35	1.71
14676065--14676224	65	2.5	64	80	4	180	43	6	10	39	1.66
14680424--14680461	15	2.5	15	84	16	51	21	0	2	76	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14680640--14680709	19	3.9	19	68	21	60	22	12	22	41	1.88
14680785--14680820	13	2.8	13	91	4	56	25	5	13	55	1.60
14681027--14681057	3	10.0	3	93	6	53	32	0	0	67	0.91
14682598--14682646	16	3.0	16	84	3	53	20	6	0	73	1.04
14682602--14682652	19	2.7	20	84	6	61	19	7	0	72	1.08
14682669--14682720	18	3.1	16	83	16	61	26	1	0	71	0.97
14682669--14682720	16	3.1	17	83	16	63	26	1	0	71	0.97
14682673--14682715	8	5.1	8	81	18	52	25	2	0	72	0.97
14683051--14683149	1	99.0	1	67	0	54	2	2	12	83	0.81
14683054--14683109	10	5.3	10	81	10	67	0	1	16	82	0.76
14683052--14683149	6	16.7	6	78	17	82	2	2	12	83	0.82
14683052--14683148	16	5.9	16	81	15	101	2	2	12	83	0.82
14683053--14683149	19	4.8	21	74	18	89	2	2	12	83	0.82
14683240--14683479	71	3.4	72	76	7	197	51	14	17	17	1.77
14683241--14683652	35	11.6	36	72	7	146	51	15	16	16	1.76
14683512--14683669	71	2.2	71	81	2	183	51	15	15	17	1.77
14683241--14683669	36	12.1	37	72	8	184	51	15	16	16	1.77
14683696--14683942	72	3.4	70	76	4	206	50	14	16	18	1.79
14683672--14683962	36	8.1	36	73	8	144	50	14	16	18	1.78
14684118--14684182	33	1.9	34	84	3	87	27	7	21	43	1.80
14684163--14684241	32	2.5	32	82	0	95	34	12	21	31	1.91
14684187--14684277	32	2.7	33	83	5	94	31	15	23	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14684228--14684425	69	2.9	67	74	14	190	33	14	18	33	1.91
14685349--14685402	14	3.8	14	76	11	56	0	20	1	77	0.86
14685912--14685962	10	4.8	10	77	13	57	5	11	0	82	0.83
14689732--14689771	21	1.9	21	84	0	53	32	12	12	42	1.80
14696397--14696454	21	2.8	21	100	0	116	27	17	10	44	1.81
14699048--14699083	3	12.0	3	100	0	72	33	0	0	66	0.92
14702865--14702981	25	4.6	25	71	12	87	17	5	21	56	1.60
14702861--14702981	37	3.2	37	80	4	118	17	4	22	55	1.61
14702863--14702981	50	2.4	51	84	7	161	16	5	22	55	1.61
14702861--14702981	13	9.6	13	75	12	92	17	4	22	55	1.61
14704565--14704615	18	2.8	19	82	8	54	19	7	1	70	1.21
14704577--14704615	17	2.4	17	87	12	55	23	7	0	69	1.14
14704680--14704715	5	7.6	5	87	12	58	33	0	0	66	0.92
14704675--14704715	18	2.3	18	100	0	82	34	0	0	65	0.93
14704685--14704710	13	2.0	13	100	0	52	30	0	0	69	0.89
14704611--14704712	52	2.0	51	81	11	118	33	0	0	65	0.99
14704726--14704766	21	2.0	21	90	0	64	36	2	4	56	1.34
14708383--14708434	25	2.1	25	96	0	95	42	26	9	21	1.83
14711153--14711242	33	2.7	31	81	11	92	26	7	0	65	1.19
14711258--14711284	3	9.0	3	100	0	54	33	0	0	66	0.92
14713211--14713249	14	2.8	14	84	0	51	76	0	12	10	1.01
14713210--14713249	21	1.9	21	89	0	62	75	0	15	10	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14713407--14713442	19	1.9	18	88	5	54	36	11	11	41	1.76
14714168--14714207	21	2.0	21	85	14	57	5	10	7	77	1.11
14714168--14714207	20	2.0	19	85	9	53	5	10	7	77	1.11
14714754--14714797	9	4.7	9	80	8	52	20	0	6	72	1.07
14715142--14715207	6	10.8	6	90	3	105	1	1	13	83	0.79
14715141--14715253	18	6.2	17	78	16	88	2	3	11	82	0.90
14715154--14715243	8	10.6	8	71	21	60	3	2	12	82	0.89
14715143--14715253	9	11.9	9	70	16	57	2	3	11	81	0.91
14715141--14715253	12	9.0	12	81	11	93	2	3	11	82	0.90
14715511--14716032	34	15.8	32	70	14	125	31	16	17	34	1.92
14715571--14716089	67	7.8	67	71	13	170	30	16	17	35	1.93
14715577--14716033	34	13.8	33	69	11	157	30	16	18	34	1.93
14715776--14715937	67	2.4	65	86	5	209	30	16	17	35	1.92
14716264--14716385	22	5.6	22	80	5	88	27	18	17	36	1.94
14716318--14716385	21	3.2	21	89	2	100	25	20	20	33	1.97
14716365--14716483	29	3.8	31	76	7	98	32	15	18	32	1.93
14717030--14717064	8	4.2	8	89	7	52	8	14	0	77	0.99
14717391--14717474	33	2.6	32	78	14	91	3	22	2	71	1.13
14717440--14717507	28	2.4	26	81	18	75	4	19	0	76	0.95
14717464--14717510	19	2.5	19	80	13	60	4	17	0	78	0.90
14717457--14717508	22	2.5	21	77	19	56	5	15	0	78	0.92
14717436--14717503	24	2.9	22	79	20	59	4	20	0	75	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14717395--14717510	61	1.9	61	83	5	153	3	21	1	73	1.07
14717983--14718038	27	2.1	27	87	9	80	1	25	1	71	1.05
14718170--14718218	25	2.0	25	83	0	62	53	4	26	16	1.61
14718958--14719004	10	4.7	10	89	7	51	4	21	0	74	0.99
14718970--14719012	9	4.8	9	81	18	54	0	18	0	81	0.69
14718959--14719004	20	2.3	20	88	7	67	2	21	0	76	0.90
14718971--14719004	10	3.4	10	100	0	68	0	17	0	82	0.67
14718971--14719014	18	2.4	18	84	0	61	0	15	0	84	0.63
14722905--14722959	26	2.2	24	83	6	65	67	5	3	23	1.28
14724122--14724164	20	2.2	20	91	0	68	9	9	37	44	1.69
14724184--14724232	12	4.1	12	78	7	55	24	10	16	48	1.76
14724515--14724568	3	18.0	3	96	0	99	33	1	0	64	1.04
14724641--14724669	12	2.3	13	94	5	51	20	6	0	72	1.07
14726033--14726071	16	2.5	15	84	12	51	0	10	5	84	0.76
14726886--14726916	11	2.7	11	95	5	53	25	0	0	74	0.82
14726906--14726937	16	1.9	16	93	6	55	43	3	0	53	1.16
14726906--14726938	17	1.9	17	93	0	57	45	3	0	51	1.16
14726948--14727000	11	4.6	11	82	15	63	22	1	1	73	1.03
14727954--14728002	15	3.3	14	80	11	53	59	18	2	20	1.48
14730473--14730774	144	2.1	143	79	4	322	32	12	15	39	1.85
14730542--14730811	144	1.9	144	86	3	391	32	12	15	39	1.85
14730542--14730849	144	2.2	145	82	4	385	33	11	13	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14732227--14732337	7	16.7	7	72	10	81	44	34	1	19	1.62
14732228--14732304	19	3.9	19	86	5	100	44	36	1	18	1.58
14732247--14732348	26	3.8	27	75	13	88	45	32	1	20	1.63
14734417--14734449	16	2.1	16	100	0	66	51	6	18	24	1.68
14744478--14744976	145	3.5	144	82	4	519	41	11	11	35	1.77
14745768--14745813	18	2.6	17	83	12	58	6	4	2	86	0.75
14745751--14745808	24	2.5	22	81	13	62	5	10	1	82	0.89
14745791--14745838	5	9.8	5	84	2	53	4	0	12	83	0.79
14745748--14745833	25	3.5	25	82	10	88	4	6	6	81	0.98
14745771--14745855	25	3.4	25	83	4	75	4	2	10	82	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160