genome.fa.s334.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  122  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22742927--22742972	24	1.9	24	86	8	67	45	34	6	13	1.69
22746598--22746622	13	1.9	13	100	0	50	40	0	0	60	0.97
22747269--22747306	2	19.0	2	100	0	76	50	0	0	50	1.00
22747590--22747638	15	3.0	17	79	11	66	55	0	0	44	0.99
22747712--22747771	29	2.1	29	84	6	77	45	3	0	51	1.17
22747742--22747791	20	2.4	19	81	15	55	50	0	0	50	1.00
22748009--22748064	26	2.2	26	90	6	87	62	8	7	21	1.48
22753144--22753298	66	2.4	64	77	9	161	50	5	9	34	1.58
22753148--22753328	44	4.1	43	78	8	152	50	5	8	35	1.57
22753141--22753328	22	8.6	23	70	17	114	50	5	8	35	1.57
22753510--22753572	21	3.0	21	72	4	63	47	0	9	42	1.36
22753554--22753606	22	2.4	22	83	0	70	45	5	9	39	1.60
22753636--22753698	22	2.9	22	87	0	90	39	1	11	47	1.49
22753840--22753916	22	3.5	22	81	0	91	51	6	1	40	1.36
22753848--22753916	11	6.3	11	70	6	50	53	7	1	37	1.38
22754293--22754431	22	6.3	22	78	5	118	48	6	6	38	1.55
22754295--22754381	11	7.9	11	69	0	57	50	6	4	37	1.50
22754402--22754465	32	2.0	32	84	6	85	48	7	6	37	1.57
22754471--22754519	22	2.2	22	82	7	64	48	10	8	32	1.66
22754621--22754720	22	4.5	22	76	2	92	50	6	10	34	1.60
22754619--22754707	44	2.0	44	84	4	117	51	5	8	33	1.57
22754866--22754943	22	3.5	22	84	6	86	50	6	6	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22754895--22754973	22	3.6	22	79	6	79	49	3	5	41	1.43
22755425--22755481	21	2.7	21	81	5	71	42	8	12	36	1.74
22756137--22756163	2	13.5	2	100	0	54	51	0	0	48	1.00
22764271--22764302	2	16.0	2	100	0	64	50	0	0	50	1.00
22767656--22767694	12	3.2	12	88	0	51	53	38	0	7	1.30
22767664--22767697	2	17.0	2	87	0	50	52	44	0	2	1.16
22772972--22773158	104	1.8	103	85	3	268	42	4	6	47	1.49
22773110--22773157	23	2.1	22	84	3	60	35	2	0	62	1.07
22774770--22774831	30	2.2	28	82	8	72	48	1	9	40	1.46
22778169--22778241	32	2.4	28	79	18	76	43	2	5	47	1.40
22783658--22783683	2	13.0	2	100	0	52	0	50	0	50	1.00
22785236--22785262	2	13.5	2	100	0	54	51	0	0	48	1.00
22790103--22790145	22	2.0	22	95	0	77	32	11	11	44	1.77
22790527--22790561	18	1.9	18	88	0	52	22	14	25	37	1.92
22794004--22794047	22	2.0	22	95	0	79	31	11	13	43	1.80
22807639--22807722	25	3.3	25	64	18	64	30	10	20	38	1.87
22811278--22811313	2	18.0	2	94	0	63	50	2	0	47	1.15
22820330--22820371	14	2.7	16	78	17	52	47	4	2	45	1.36
22823610--22823641	17	1.9	17	93	6	57	46	3	0	50	1.17
22824901--22824931	16	1.9	16	100	0	62	12	0	22	64	1.27
22826420--22826476	20	2.8	20	76	10	53	28	26	1	43	1.65
22831494--22831981	84	5.8	84	72	8	258	29	13	17	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22831695--22831982	87	3.4	84	75	10	203	29	13	18	37	1.90
22833298--22833332	3	11.7	3	100	0	70	31	0	0	68	0.90
22834360--22834497	17	8.4	17	78	10	101	51	28	0	19	1.52
22834361--22834488	9	15.8	8	73	17	61	50	28	0	20	1.53
22834419--22834463	24	2.0	23	91	8	74	53	17	0	28	1.44
22834378--22834555	62	2.8	64	78	10	161	50	28	0	20	1.53
22834437--22834527	15	5.9	15	67	12	51	51	24	1	23	1.55
22834607--22834655	22	2.2	23	79	17	59	53	22	0	24	1.47
22834615--22834646	7	4.4	7	96	4	55	50	25	0	25	1.50
22835278--22835425	58	2.5	58	86	3	190	41	6	14	37	1.73
22835447--22835483	19	2.0	19	89	5	58	8	8	2	81	0.97
22839083--22839136	25	2.2	24	83	6	63	35	5	18	40	1.74
22839145--22839215	31	2.3	32	87	4	101	25	22	25	26	2.00
22839275--22839313	20	2.0	20	84	0	51	33	20	17	28	1.96
22839631--22839679	19	2.5	19	86	3	62	10	2	2	85	0.76
22839759--22840218	117	3.9	117	91	4	660	43	8	15	33	1.77
22839761--22840218	57	7.7	58	84	8	595	43	8	15	33	1.77
22841062--22841096	14	2.5	14	100	0	70	34	8	20	37	1.83
22841650--22841714	22	3.0	21	73	8	60	75	0	16	7	1.03
22841646--22841711	32	2.1	32	82	5	80	78	0	15	6	0.93
22841684--22841728	19	2.3	20	82	14	58	80	0	15	4	0.87
22843539--22843960	43	10.1	42	83	7	501	24	15	20	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22843545--22843997	126	3.6	126	82	7	548	24	15	20	39	1.92
22844181--22844254	19	3.9	19	79	17	66	22	1	2	72	1.04
22844188--22844254	7	9.9	7	78	12	50	23	1	2	71	1.08
22844250--22844292	7	6.0	7	81	13	52	27	4	0	67	1.10
22844250--22844292	15	3.0	15	86	6	63	27	4	0	67	1.10
22844181--22844342	4	41.2	4	67	15	63	25	2	3	68	1.18
22844228--22844332	30	3.5	30	76	15	83	28	2	2	65	1.21
22844346--22844383	18	2.1	18	95	0	67	23	5	7	63	1.42
22845271--22845321	21	2.5	20	82	14	68	11	3	1	82	0.89
22845294--22845331	12	2.9	13	88	7	51	15	2	0	81	0.80
22845368--22845463	49	2.0	49	89	2	149	42	6	8	42	1.60
22845417--22845663	114	2.1	117	87	5	360	44	6	12	36	1.68
22845417--22845665	59	4.3	57	78	11	249	43	6	12	36	1.69
22849870--22849918	2	24.5	2	100	0	98	0	0	48	51	1.00
22850020--22850050	2	15.5	2	100	0	62	48	0	0	51	1.00
22849794--22850111	160	2.0	160	84	2	415	32	11	19	36	1.88
22850355--22850407	3	17.7	3	100	0	106	32	0	0	67	0.91
22850864--22850902	19	2.1	19	90	0	60	20	10	15	53	1.70
22851590--22851622	16	2.1	16	94	0	57	75	0	0	24	0.80
22859199--22859230	11	2.8	12	90	9	57	37	0	0	62	0.95
22860007--22860047	13	3.2	13	82	0	55	65	0	0	34	0.93
22860006--22860048	16	2.8	16	78	3	52	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22860006--22860054	26	2.0	26	88	8	75	63	0	0	36	0.95
22860362--22860401	19	2.1	19	95	0	71	42	2	0	55	1.13
22860365--22860406	10	4.3	10	84	6	59	38	2	2	57	1.25
22860503--22860557	22	2.5	22	79	8	58	38	1	3	56	1.28
22861622--22861693	23	3.0	23	72	13	65	52	0	6	40	1.28
22862354--22862394	2	20.5	2	100	0	82	51	0	48	0	1.00
22869160--22869189	2	15.0	2	100	0	60	50	0	0	50	1.00
22869836--22869946	10	10.9	10	70	14	75	55	1	2	39	1.24
22869836--22869992	9	16.3	9	68	15	57	56	1	3	37	1.28
22869830--22869956	31	4.2	30	75	15	100	56	1	3	38	1.25
22869935--22869972	19	2.1	19	90	5	60	63	2	7	26	1.35
22869984--22870045	18	3.5	17	77	14	63	58	0	1	40	1.08
22870015--22870053	17	2.3	18	86	8	55	53	2	2	41	1.28
22870142--22870193	20	2.5	21	75	9	54	57	3	3	34	1.35
22870238--22870284	16	2.8	17	81	12	62	72	4	2	21	1.12
22870236--22870294	9	6.6	9	75	14	52	69	6	1	22	1.21
22870500--22870524	10	2.5	10	100	0	50	12	0	16	72	1.13
22870553--22870631	36	2.3	34	79	12	90	29	3	3	63	1.29
22870618--22870655	21	1.9	20	89	10	60	44	0	0	55	0.99
22873519--22873551	13	2.4	14	90	10	50	66	6	0	27	1.15
22873521--22873571	18	2.9	17	75	21	52	66	5	1	25	1.24
22873534--22873575	21	2.0	21	95	0	75	69	4	4	21	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22885506--22885661	52	3.0	51	83	3	168	27	20	7	44	1.77
22885921--22885982	23	2.6	24	82	5	63	22	37	4	35	1.76
22885941--22886070	25	5.2	25	76	5	113	20	35	7	36	1.81
22886602--22886758	52	3.0	51	87	3	208	27	22	8	42	1.82
22886936--22887005	30	2.3	30	95	2	122	47	7	4	41	1.50
22887282--22887306	2	12.5	2	100	0	50	48	0	0	52	1.00
22888579--22888603	1	25.0	1	100	0	50	0	0	0	100	0.00
22891151--22891217	33	2.1	32	83	13	84	58	0	0	41	0.98
22891169--22891202	18	1.9	18	88	5	52	58	0	0	41	0.98
22893564--22893635	35	2.1	35	97	0	135	37	6	8	47	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160