genome.fa.s334.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  90  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17034533--17034614	34	2.4	34	97	2	157	50	0	0	50	1.00
17034480--17034612	11	11.6	11	71	23	82	48	0	1	50	1.10
17034533--17034614	23	3.6	23	78	21	93	50	0	0	50	1.00
17035375--17035435	19	3.0	20	75	20	63	37	4	0	57	1.20
17035364--17035435	23	3.2	24	75	20	93	37	4	0	58	1.18
17036105--17036144	6	6.8	6	82	5	55	45	2	2	50	1.28
17036104--17036144	17	2.4	17	87	4	55	43	2	2	51	1.28
17036432--17036482	17	2.9	17	79	5	57	50	0	0	49	1.00
17037305--17042606	181	29.7	181	75	8	3102	40	8	9	41	1.68
17037293--17045741	539	15.8	537	75	8	5161	40	8	9	41	1.68
17037293--17038426	182	6.3	179	77	8	833	40	7	8	43	1.63
17040921--17042534	180	9.0	179	73	9	795	40	8	9	41	1.67
17042111--17042152	20	2.2	20	82	4	50	40	2	2	54	1.26
17042647--17045127	181	13.8	181	77	5	2028	39	8	9	41	1.69
17043990--17044040	18	2.8	19	80	17	72	43	3	11	41	1.60
17045463--17045797	179	1.9	182	83	4	446	40	7	8	43	1.63
17047079--17047411	178	1.9	179	84	4	449	42	9	9	38	1.69
17046739--17048275	177	8.7	179	72	11	845	40	8	9	41	1.68
17047774--17048275	181	2.8	180	80	5	518	41	8	8	42	1.66
17048304--17050408	181	11.7	180	75	9	1557	39	8	9	42	1.68
17048304--17050408	361	5.9	359	75	9	1122	39	8	9	42	1.68
17050358--17050443	35	2.5	35	98	0	163	39	11	10	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17050393--17050987	180	3.3	178	78	6	540	39	9	10	40	1.73
17052624--17055468	181	16.0	179	74	9	1454	41	8	9	40	1.68
17053990--17055468	359	4.1	353	76	9	1159	41	7	9	41	1.67
17052624--17055468	540	5.3	535	76	9	2111	41	8	9	40	1.68
17056076--17056108	18	1.9	17	88	11	50	48	6	6	39	1.53
17055792--17056198	177	2.3	180	80	7	436	42	6	8	42	1.61
17056043--17056353	163	1.9	162	81	4	376	39	7	9	43	1.66
17056925--17057119	96	2.0	96	85	2	257	34	9	8	47	1.65
17057148--17057396	128	1.9	128	82	5	306	40	10	9	40	1.71
17057597--17057986	182	2.1	181	83	4	462	40	8	9	42	1.67
17058156--17058547	210	1.9	210	83	1	509	41	7	9	41	1.66
17058866--17059578	181	3.9	179	75	9	561	41	8	7	42	1.64
17059814--17059871	17	3.3	17	80	4	62	53	0	3	43	1.17
17059818--17059871	19	2.9	19	76	20	53	55	0	3	40	1.17
17059945--17059981	18	2.1	18	94	0	65	48	0	2	48	1.15
17060289--17060350	31	2.0	31	81	12	74	45	3	1	50	1.27
17061068--17061110	12	3.5	12	78	15	52	46	0	2	51	1.13
17063516--17063566	3	16.3	3	80	8	57	66	5	0	27	1.14
17063565--17063614	3	16.7	3	91	0	82	30	0	4	66	1.10
17063895--17063962	23	3.0	23	97	0	127	36	13	32	17	1.89
17067915--17067983	34	2.0	34	97	0	129	31	13	20	34	1.91
17068614--17068655	22	2.0	22	90	4	68	80	0	9	9	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17069284--17069344	18	3.5	16	76	22	52	73	3	21	1	1.06
17069285--17069338	9	5.8	9	81	14	56	74	1	22	1	1.02
17069597--17069749	35	4.4	35	70	9	98	19	16	10	52	1.72
17069666--17069894	70	3.3	69	75	10	200	17	19	12	50	1.77
17069666--17069890	35	6.4	35	70	8	118	17	20	12	50	1.77
17069597--17069793	106	1.9	105	84	7	265	18	17	11	52	1.74
17069597--17069834	106	2.3	105	79	5	248	17	17	12	52	1.73
17070500--17070535	3	12.0	3	93	0	63	63	0	2	33	1.08
17070561--17070603	22	2.0	22	86	9	61	65	4	0	30	1.13
17070559--17070613	27	2.0	28	82	10	69	63	7	0	29	1.21
17072455--17072495	19	2.2	19	86	8	57	56	0	4	39	1.21
17072930--17073085	13	11.6	14	75	16	111	50	17	4	26	1.65
17072926--17073053	54	2.4	54	98	0	247	47	20	4	27	1.70
17072915--17073105	27	7.1	26	78	8	161	50	18	4	26	1.65
17072926--17073105	54	3.4	54	89	3	238	50	20	3	26	1.65
17073015--17073101	13	6.6	13	80	7	68	52	20	3	22	1.61
17073283--17073326	21	2.2	19	84	8	52	59	4	2	34	1.30
17073313--17073342	8	3.6	8	95	4	51	76	0	0	23	0.78
17074535--17074567	17	1.9	17	100	0	66	12	27	12	48	1.76
17077497--17077546	13	3.8	13	81	5	64	26	8	16	50	1.72
17077491--17077548	27	2.1	28	90	3	91	29	6	13	50	1.68
17079353--17079393	19	2.2	19	100	0	82	39	12	14	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17079831--17079856	10	2.6	10	100	0	52	38	0	0	61	0.96
17080422--17080610	32	5.8	32	79	9	161	25	14	20	39	1.91
17080440--17080611	64	2.6	65	83	11	201	26	14	19	40	1.90
17080471--17080647	97	1.8	97	80	11	211	28	14	18	37	1.91
17081057--17081107	22	2.3	22	89	0	75	25	17	21	35	1.95
17081198--17081321	32	3.8	32	73	6	124	29	13	19	37	1.90
17083509--17083550	20	2.2	20	91	4	68	4	16	2	76	1.07
17085267--17085310	4	11.0	4	80	9	54	45	2	25	27	1.65
17086701--17086736	10	3.7	10	88	7	56	0	13	0	86	0.58
17086704--17086736	9	3.6	9	95	4	57	0	12	0	87	0.53
17088990--17089087	3	32.7	3	77	8	85	27	4	2	66	1.21
17089836--17089905	6	11.5	6	78	13	56	18	1	1	78	0.90
17089829--17089907	14	5.6	14	72	11	63	17	1	2	78	0.93
17089836--17089908	21	3.6	20	74	18	62	19	1	1	78	0.91
17101944--17102149	65	3.2	64	79	4	225	20	18	12	48	1.80
17101941--17102215	130	2.1	128	79	7	277	20	18	13	47	1.82
17102348--17102686	131	2.6	130	82	4	382	18	21	15	45	1.86
17102502--17102599	35	3.1	30	67	17	81	16	17	18	47	1.82
17102348--17102708	65	5.6	65	76	5	293	18	21	15	44	1.86
17102938--17102970	16	2.0	17	94	5	59	21	0	0	78	0.75
17103673--17103766	4	22.8	4	71	26	56	20	7	1	71	1.16
17103712--17103763	18	2.9	17	78	18	61	19	7	0	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17104695--17104719	10	2.5	10	100	0	50	28	0	0	72	0.86
17104738--17104790	3	17.0	3	79	11	54	26	3	0	69	1.05
17105003--17105044	17	2.4	18	76	4	50	73	2	0	23	0.94
17105857--17105890	15	2.3	15	89	0	50	11	0	0	88	0.52
17105854--17105888	18	1.9	18	94	0	61	11	0	0	88	0.51
17106822--17106885	14	4.5	14	75	14	51	29	0	0	70	0.88
17117180--17117222	10	4.1	10	80	11	50	60	0	34	4	1.17
17126429--17127402	491	2.0	492	92	1	1632	30	14	19	35	1.91
17131414--17131758	59	5.7	57	75	14	184	47	7	11	32	1.68
17132604--17132649	22	2.1	22	95	0	83	26	30	4	39	1.75
17135250--17135311	9	7.0	8	79	18	61	77	4	16	1	1.02
17135257--17135302	19	2.5	18	83	13	58	78	4	17	0	0.91
17135698--17135796	10	10.2	10	80	9	116	83	0	14	2	0.73
17135698--17135796	19	5.1	19	84	13	107	83	0	14	2	0.73
17135700--17135786	19	4.7	19	85	4	115	86	0	12	1	0.64
17135699--17135783	1	85.0	1	77	0	71	87	0	11	1	0.61
17136931--17137006	25	3.2	25	69	17	72	40	11	14	32	1.82
17136949--17137120	21	7.9	21	78	7	182	37	8	16	36	1.80
17136931--17137113	46	4.1	43	80	6	179	38	9	15	35	1.81
17136949--17137120	86	2.0	87	88	4	258	37	8	16	36	1.80
17137558--17137736	85	2.1	85	82	6	211	21	15	19	43	1.87
17137558--17137736	41	4.2	43	79	8	170	21	15	19	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17139836--17140095	62	4.4	57	78	11	190	47	7	12	32	1.68
17139891--17140096	62	3.4	61	82	10	237	48	7	11	32	1.67
17139815--17140124	59	5.3	58	77	13	242	48	7	11	32	1.67
17143250--17143275	6	4.3	6	100	0	52	34	0	15	50	1.45
17148399--17149580	236	5.0	235	83	3	1269	33	10	12	44	1.75
17150949--17151030	39	2.1	39	93	0	137	26	8	17	47	1.76
17156886--17156914	13	2.2	13	100	0	58	51	6	13	27	1.66
17164398--17164451	26	2.1	26	100	0	108	24	11	29	35	1.90
17166774--17166834	27	2.2	28	85	5	88	36	14	4	44	1.67
17166783--17166834	27	1.9	27	96	0	95	38	13	3	44	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160