genome.fa.s334.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  158  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32563941--32563975	6	5.7	6	86	6	52	82	0	17	0	0.66
32563942--32563980	14	2.7	14	81	18	53	84	0	15	0	0.62
32568462--32568609	45	3.3	45	93	0	242	33	9	26	30	1.88
32568462--32568627	45	3.7	45	86	1	183	34	10	25	29	1.90
32572119--32572145	12	2.2	12	100	0	54	25	0	0	74	0.83
32572139--32572190	12	4.2	12	80	9	68	30	0	0	69	0.89
32572132--32572208	26	2.8	26	82	9	84	33	0	0	66	0.92
32572158--32572198	17	2.6	17	85	14	61	34	0	0	65	0.93
32573249--32573292	24	1.9	24	86	9	65	75	9	2	13	1.14
32573811--32573841	4	7.5	4	92	7	53	74	0	0	25	0.82
32574092--32574122	15	2.1	15	93	0	53	41	3	41	12	1.59
32581437--32581496	26	2.4	25	81	8	70	48	13	10	28	1.74
32581454--32581507	26	2.0	26	82	3	63	44	16	12	25	1.84
32581571--32581595	12	2.1	12	100	0	50	68	24	0	8	1.16
32581573--32581601	15	1.9	15	100	0	58	68	24	0	6	1.13
32585252--32585305	25	2.2	25	93	0	90	35	9	16	38	1.81
32585537--32586077	19	30.0	19	68	14	252	26	19	25	28	1.99
32585505--32585681	51	3.4	51	79	5	194	27	19	24	28	1.98
32585588--32585700	37	3.0	37	88	1	163	30	19	21	28	1.97
32585693--32585788	31	3.3	31	66	19	96	27	18	25	29	1.98
32585625--32586211	196	3.1	194	88	7	928	26	19	26	28	1.99
32585889--32585984	31	3.3	31	68	19	87	27	20	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32585967--32586077	37	3.0	37	94	1	186	28	19	23	27	1.98
32585832--32586187	182	1.9	184	94	1	635	26	20	25	27	1.99
32586149--32586187	19	2.1	19	100	0	78	25	23	25	25	2.00
32586040--32586204	51	3.1	51	79	14	215	23	18	28	29	1.98
32587956--32587986	10	3.1	10	90	0	53	58	0	41	0	0.98
32596669--32596694	3	8.7	3	100	0	52	0	30	69	0	0.89
32597840--32597894	20	2.8	19	86	8	74	65	1	1	30	1.13
32600064--32600132	33	2.1	33	97	0	129	30	23	23	23	1.99
32600114--32600149	17	2.1	17	89	0	54	38	19	22	19	1.93
32602276--32602319	22	2.0	22	95	0	79	43	13	11	31	1.80
32605761--32605795	18	1.9	18	88	0	52	37	25	14	22	1.92
32605970--32606028	25	2.4	25	86	5	77	40	18	27	13	1.88
32606177--32606220	22	2.0	22	95	0	79	43	13	11	31	1.80
32610302--32610566	136	1.9	138	93	1	453	27	14	12	45	1.81
32611675--32611707	2	16.5	2	100	0	66	48	0	0	51	1.00
32612437--32612552	6	19.2	6	76	15	89	49	0	0	49	1.13
32612439--32612488	7	7.7	7	88	6	63	52	0	2	46	1.12
32620421--32620495	37	2.0	37	97	0	141	40	13	12	34	1.81
32625672--32625729	27	2.1	27	80	0	62	17	5	60	17	1.54
32626738--32626776	19	2.1	19	100	0	78	25	25	23	25	2.00
32626721--32626884	51	3.1	51	80	13	222	29	28	18	23	1.98
32626740--32626884	50	2.6	58	83	9	189	28	27	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32626847--32627368	19	29.0	19	66	15	214	28	25	19	27	1.99
32626940--32627035	31	3.3	31	68	19	87	28	23	20	27	1.99
32626738--32627400	182	3.7	182	89	3	1017	28	25	19	26	1.99
32626997--32627117	32	3.6	32	75	13	118	27	26	21	24	1.99
32626980--32627124	70	2.1	69	94	1	254	26	26	21	25	1.99
32627117--32627212	31	3.3	31	66	19	96	29	25	18	27	1.98
32627224--32627400	51	3.4	51	79	5	194	28	24	19	27	1.98
32627600--32627653	25	2.2	25	93	0	90	38	16	9	35	1.81
32631303--32631331	15	1.9	15	100	0	58	6	0	24	68	1.13
32631309--32631333	12	2.1	12	100	0	50	8	0	24	68	1.16
32631409--32631467	26	2.4	25	83	8	68	28	10	13	47	1.75
32633182--32633225	13	3.5	13	81	3	54	31	4	0	63	1.14
32634462--32634490	3	9.7	3	100	0	58	34	0	31	34	1.58
32641322--32641356	12	2.9	12	100	0	70	31	8	0	60	1.27
32646401--32646435	2	17.5	2	100	0	70	51	0	48	0	1.00
32650193--32650235	14	3.1	14	77	9	52	39	0	0	60	0.97
32650193--32650250	28	2.1	28	84	12	75	41	0	1	56	1.09
32655879--32655918	20	2.1	19	90	4	62	30	7	5	57	1.48
32659139--32659169	15	2.1	15	93	0	53	51	0	6	41	1.27
32659273--32659357	22	3.9	22	76	0	80	55	5	4	34	1.45
32659498--32659561	22	2.9	21	75	9	56	50	1	9	39	1.44
32659542--32659694	65	2.4	64	73	10	141	48	3	6	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32659726--32659789	22	2.9	22	70	19	53	64	1	4	29	1.23
32659791--32659881	22	4.3	22	75	8	64	43	5	12	38	1.65
32659994--32660064	22	3.2	22	82	4	72	49	7	4	39	1.49
32660339--32660492	11	13.9	11	64	11	55	53	4	5	35	1.45
32660349--32660529	22	8.1	22	68	15	52	54	4	5	34	1.45
32660442--32660518	22	3.4	23	73	16	72	53	3	5	37	1.42
32660623--32660672	22	2.3	22	89	6	75	36	4	14	46	1.63
32660766--32660824	22	2.7	22	86	0	82	47	5	10	37	1.59
32660847--32661042	22	9.0	22	70	14	59	45	5	9	39	1.59
32660953--32661016	32	2.0	32	87	6	94	42	1	12	43	1.52
32660971--32661018	11	4.5	11	77	15	55	43	2	14	39	1.57
32661061--32661137	22	3.5	22	75	7	75	50	7	6	35	1.57
32661414--32661476	11	5.8	11	71	17	51	57	1	3	38	1.24
32661414--32661560	21	7.0	21	81	3	136	51	4	3	40	1.40
32661447--32661541	31	3.1	30	71	15	77	48	5	3	43	1.41
32661447--32661560	10	11.0	10	70	13	70	50	6	2	41	1.41
32674611--32674635	2	12.5	2	100	0	50	52	0	0	48	1.00
32677661--32677839	61	3.0	59	77	13	195	32	11	7	48	1.67
32677842--32678103	60	4.3	61	78	9	268	36	10	5	47	1.61
32677826--32678101	61	4.5	60	77	11	258	36	9	5	48	1.59
32677826--32678101	121	2.3	120	79	10	312	36	9	5	48	1.59
32678467--32678521	23	2.4	23	96	0	101	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32680213--32680479	114	2.3	114	87	1	347	37	14	13	34	1.87
32680256--32680481	114	2.0	114	92	0	380	36	15	14	33	1.89
32680508--32680696	58	3.2	59	81	3	211	35	17	8	37	1.81
32680661--32680759	21	4.8	20	85	9	128	36	15	8	40	1.76
32680660--32680761	41	2.5	42	83	6	145	37	15	7	39	1.77
32681887--32681933	25	1.9	25	82	4	60	6	12	2	78	1.02
32685782--32685943	59	2.7	62	81	7	199	33	11	6	48	1.65
32685940--32685972	14	2.3	15	89	5	50	27	0	9	63	1.24
32685946--32686278	60	5.5	60	77	10	306	35	9	6	48	1.61
32685964--32686278	121	2.6	119	82	10	358	34	9	6	48	1.63
32688186--32688219	12	2.8	12	90	0	50	58	0	0	41	0.98
32689667--32689694	2	14.0	2	100	0	56	50	0	0	50	1.00
32690402--32690426	4	6.2	4	100	0	50	48	0	0	52	1.00
32692012--32692046	17	2.0	18	88	5	54	62	0	11	25	1.28
32694051--32694350	60	4.9	58	81	13	370	33	12	7	47	1.70
32694051--32694350	123	2.4	123	96	0	548	33	12	7	47	1.70
32694398--32694507	46	2.4	46	80	7	116	73	3	4	18	1.15
32694592--32694617	10	2.6	10	100	0	52	7	30	34	26	1.85
32695577--32695610	16	2.1	16	89	10	52	70	2	0	26	1.01
32695574--32695645	9	7.8	9	80	11	58	73	2	2	20	1.08
32695810--32695885	1	76.0	1	73	0	62	0	1	11	86	0.62
32695810--32695885	14	5.8	13	80	17	79	0	1	11	86	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32695810--32695885	21	3.8	20	83	13	95	0	1	11	86	0.62
32695811--32695885	28	2.7	27	84	14	98	0	1	12	86	0.63
32695892--32696222	41	8.0	41	91	3	513	35	22	17	23	1.95
32697415--32697479	33	1.9	34	90	9	107	6	20	0	73	1.03
32701338--32701699	60	5.9	60	82	9	446	33	12	8	46	1.70
32701338--32701699	182	2.0	182	93	1	627	33	12	8	46	1.70
32701366--32701737	182	2.0	180	85	6	491	37	10	7	44	1.67
32701714--32701781	18	3.7	19	74	21	65	79	1	4	14	0.96
32701709--32701784	36	2.2	33	88	6	107	78	1	3	15	0.96
32701709--32701797	22	3.9	23	71	27	55	78	1	5	14	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160