genome.fa.s334.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  44  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9896998--9897032	6	5.8	6	100	0	70	0	17	34	48	1.47
9899276--9899329	17	3.2	16	82	7	63	62	1	3	31	1.23
9899379--9899440	18	3.4	19	70	27	53	70	4	1	22	1.14
9899379--9899456	27	2.9	27	75	11	70	73	5	1	20	1.10
9899488--9899565	18	4.5	17	75	15	70	70	7	2	19	1.23
9899660--9899719	27	2.3	26	83	11	77	30	6	1	61	1.31
9899805--9899849	19	2.4	19	85	14	58	35	8	4	51	1.54
9899870--9899944	17	4.4	17	71	20	66	28	1	9	61	1.35
9902587--9902616	15	2.0	15	93	0	51	23	6	30	40	1.80
9902513--9902629	12	9.5	12	72	9	56	37	5	23	33	1.77
9908341--9908418	30	2.6	30	76	13	81	52	6	7	33	1.55
9911121--9911306	92	2.0	91	97	1	354	33	10	19	36	1.86
9912944--9912981	18	2.1	18	90	0	58	31	0	10	57	1.32
9913376--9913464	42	2.1	41	79	2	97	42	10	12	34	1.76
9913470--9913695	126	1.8	124	83	3	303	36	8	7	46	1.63
9913776--9913830	21	2.5	22	82	8	67	60	0	5	34	1.20
9915188--9915235	19	2.6	17	78	18	51	70	2	0	27	0.98
9916071--9916107	2	18.5	2	100	0	74	48	0	0	51	1.00
9921792--9921830	20	2.0	20	94	0	69	23	38	17	20	1.93
9923341--9923374	13	2.6	13	85	0	50	52	2	0	44	1.16
9923941--9923996	23	2.4	24	80	14	64	46	1	5	46	1.36
9933455--9933519	31	2.1	31	97	0	121	49	6	4	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9933948--9933998	14	3.8	14	77	15	54	56	17	5	19	1.61
9934081--9934125	21	2.1	22	87	4	65	60	6	6	26	1.47
9935342--9935471	59	2.2	57	84	8	179	21	3	20	54	1.58
9936916--9937015	11	8.9	11	71	19	64	22	1	28	49	1.57
9936891--9937015	34	3.7	33	72	16	94	24	1	28	46	1.62
9937171--9937272	53	1.9	53	93	0	177	32	11	11	44	1.77
9937178--9937292	53	2.2	53	87	0	158	33	12	13	40	1.81
9937314--9937364	25	2.0	25	88	3	75	45	15	11	27	1.81
9937845--9937902	22	2.8	21	82	15	75	46	13	8	31	1.74
9938017--9938136	18	6.8	18	72	13	97	44	13	15	26	1.84
9937969--9938130	36	4.5	35	72	7	119	46	12	13	26	1.79
9938066--9938170	53	2.0	54	82	1	131	49	11	12	26	1.74
9938003--9938200	89	2.2	90	78	8	217	47	13	13	26	1.79
9938193--9938249	21	2.7	21	97	0	105	40	10	15	33	1.82
9938325--9938399	37	2.0	37	84	0	96	45	16	9	29	1.78
9938460--9938501	21	2.0	21	90	0	66	42	9	7	40	1.65
9938427--9938539	24	4.8	24	75	14	92	46	9	7	37	1.64
9938414--9938539	48	2.6	48	80	8	132	45	10	7	36	1.68
9941809--9941834	8	3.2	8	100	0	52	53	11	11	23	1.69
9942981--9943085	44	2.4	44	80	12	117	53	12	13	20	1.72
9945772--9945817	11	3.9	11	78	15	56	82	2	15	0	0.76
9945831--9945885	3	18.7	3	88	3	85	63	1	1	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9945834--9945885	26	2.0	26	92	0	86	63	1	1	32	1.16
9945828--9945885	29	2.0	29	93	0	98	63	1	1	32	1.14
9950252--9950288	17	2.1	18	95	5	67	29	0	10	59	1.31
9950260--9950308	17	2.8	17	87	3	62	38	0	8	53	1.31
9952611--9952670	4	14.8	4	76	10	50	66	1	5	26	1.21
9954862--9954986	44	2.9	43	84	8	155	58	11	8	22	1.58
9964803--9964877	7	11.8	6	81	14	57	76	6	2	14	1.11
9964802--9964866	14	4.3	14	75	17	67	75	7	3	13	1.14
9964805--9964869	33	2.0	33	84	6	87	73	7	3	15	1.18
9978201--9978240	21	1.9	21	84	0	53	42	10	5	42	1.60
9979588--9979952	182	2.0	183	86	1	509	39	21	15	23	1.91
9984545--9984982	144	3.0	144	92	0	734	39	17	12	31	1.86
9987105--9987135	11	2.8	11	95	0	53	58	6	6	29	1.48
9987119--9987159	20	2.0	21	86	13	59	60	0	2	36	1.10
9987585--9987618	17	2.0	17	100	0	68	17	41	11	29	1.85
9988088--9988122	14	2.4	15	90	4	54	51	8	22	17	1.72
9988973--9989024	17	3.1	17	77	5	52	44	3	0	51	1.19
9989088--9989148	31	1.9	33	83	6	81	54	0	6	39	1.27
9991296--9991416	62	2.0	62	84	0	161	40	20	3	35	1.69
9991866--9991950	10	8.8	9	76	17	64	65	7	0	27	1.18
9991866--9991950	19	4.3	20	82	7	77	65	7	0	27	1.18
9991895--9991951	30	1.9	30	85	7	80	64	3	0	31	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9991861--9991950	20	4.6	20	78	12	80	64	7	0	27	1.21
9991895--9992036	9	14.6	9	72	14	77	57	4	1	35	1.29
9992090--9992173	11	7.4	11	74	14	55	54	0	2	42	1.13
9992232--9992310	19	4.1	19	76	15	72	54	13	0	31	1.40
9992232--9992307	10	8.0	9	77	20	75	55	14	0	30	1.40
9992232--9992310	29	2.7	29	92	0	131	54	13	0	31	1.40
9992692--9992777	10	9.2	10	73	16	53	43	1	2	53	1.21
9992695--9992777	9	9.0	9	76	11	62	42	1	2	54	1.21
9992836--9992879	20	2.2	20	83	4	52	81	0	18	0	0.68
9993854--9994022	61	2.8	60	78	7	178	29	13	11	45	1.78
9994075--9994132	20	2.9	20	79	7	73	43	29	0	27	1.55
9999502--9999615	7	16.6	7	71	8	74	42	32	1	23	1.65
9999469--9999562	14	6.9	14	67	13	54	46	28	1	23	1.59
9999503--9999596	27	3.5	27	77	7	84	41	32	2	23	1.66
9999495--9999592	14	7.2	14	73	5	85	42	31	2	23	1.65
10001540--10001579	21	1.9	21	90	10	64	67	5	0	27	1.11
10004484--10004527	20	2.1	21	91	4	72	34	4	0	61	1.16
10005159--10005215	24	2.4	25	82	8	73	29	3	21	45	1.68
10005225--10005255	15	2.1	15	93	0	53	45	0	6	48	1.28
10008290--10008321	15	2.0	17	88	11	50	21	3	0	75	0.95
10009923--10010316	131	3.0	128	73	7	335	42	14	14	28	1.85
10009976--10010335	44	8.3	44	75	5	230	42	14	15	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10009981--10010205	87	2.6	87	81	5	233	40	13	16	28	1.87
10011720--10011777	7	8.0	7	81	11	64	17	3	0	79	0.87
10011720--10011777	13	4.0	14	82	14	64	17	3	0	79	0.87
10011735--10011778	8	5.5	8	86	0	61	13	4	0	81	0.83
10012924--10012956	17	1.9	17	93	0	57	33	12	12	42	1.79
10020792--10020992	85	2.4	85	92	1	341	43	21	9	24	1.83
10021620--10023117	356	4.2	357	88	2	2021	36	13	14	36	1.84
10024276--10024790	257	2.0	257	97	0	967	33	13	19	33	1.91
10026192--10026390	99	2.0	99	93	0	335	36	12	13	37	1.82
10033757--10033789	5	7.0	5	96	3	52	78	0	0	21	0.75
10034039--10034078	20	2.0	20	90	0	62	0	35	0	65	0.93
10034039--10034077	18	2.1	19	85	9	53	0	33	0	66	0.92
10034408--10034444	19	1.9	19	89	10	58	2	32	0	64	1.07
10035597--10035643	20	2.3	20	88	0	67	38	0	14	46	1.45
10042624--10042668	20	2.2	20	84	7	65	33	0	17	48	1.48
10042800--10042841	21	2.0	21	85	0	57	33	16	16	33	1.92
10043346--10043394	21	2.3	21	82	0	62	38	2	20	38	1.64
10043483--10043544	26	2.4	27	81	8	83	45	3	6	45	1.45
10043577--10043648	4	18.0	4	80	11	76	29	2	1	66	1.14
10046974--10047007	17	2.0	17	88	0	50	17	0	0	82	0.67
10047700--10047733	13	2.6	13	86	13	52	76	2	0	20	0.92
10047701--10047735	18	1.9	18	100	0	70	74	2	0	22	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10048157--10048190	17	2.0	17	88	0	50	20	14	0	64	1.28
10050076--10050109	18	1.9	18	88	5	52	44	11	17	26	1.83
10050700--10050745	17	2.8	16	86	6	56	28	0	2	69	1.00
10051143--10051207	20	3.3	20	68	14	64	41	6	16	35	1.74
10051163--10051223	18	3.3	18	65	17	52	49	3	14	32	1.60
10051142--10051223	38	2.2	37	95	2	146	43	4	15	35	1.69
10051882--10051964	38	2.2	39	76	6	89	36	10	8	44	1.70
10051966--10052003	18	2.1	18	85	9	51	39	5	0	55	1.23
10051990--10052223	115	2.0	114	81	7	269	33	9	9	47	1.69
10053303--10053373	19	3.7	19	71	16	56	53	11	5	29	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160