genome.fa.s334.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  154  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31006857--31006894	17	2.2	17	90	0	58	73	0	0	26	0.83
31006885--31006918	6	5.7	6	96	0	59	73	0	0	26	0.83
31006885--31006924	18	2.2	18	86	0	53	75	0	2	22	0.93
31008734--31008761	12	2.3	12	100	0	56	53	0	0	46	1.00
31013579--31013967	205	1.9	205	82	7	495	31	13	7	47	1.69
31013924--31013985	27	2.3	26	83	10	72	29	0	3	67	1.06
31014969--31015019	17	3.1	17	78	18	54	74	0	21	3	0.98
31014972--31015010	15	2.7	15	80	4	53	76	0	20	2	0.90
31014971--31015020	19	2.6	19	84	9	66	76	0	22	2	0.89
31015274--31015698	48	9.0	48	86	5	528	36	23	11	28	1.90
31015274--31015698	94	4.5	95	85	5	549	36	23	11	28	1.90
31015274--31015689	142	2.9	143	86	4	585	37	22	12	28	1.90
31025049--31025113	28	2.3	28	82	10	71	1	6	7	84	0.83
31025814--31025842	12	2.5	12	94	5	51	31	0	0	68	0.89
31026226--31026283	24	2.3	27	85	8	77	29	0	1	68	0.99
31026223--31026272	20	2.6	19	78	6	57	30	0	0	70	0.88
31027349--31027400	14	3.6	15	80	12	56	71	0	25	3	1.03
31035439--31035667	68	3.4	68	74	8	214	24	22	8	44	1.80
31035438--31036229	136	6.1	132	77	12	785	21	20	11	45	1.82
31035495--31035709	68	3.2	68	73	7	220	24	20	9	45	1.81
31035517--31036229	255	2.8	256	89	2	1067	21	20	11	45	1.83
31035913--31036146	120	2.0	120	86	3	328	21	20	12	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31036108--31036479	171	2.2	170	85	3	507	24	19	10	45	1.81
31042339--31042371	3	11.0	3	100	0	66	66	0	0	33	0.92
31042726--31042757	11	2.9	11	95	0	55	25	0	28	46	1.53
31042782--31042937	51	3.0	52	84	3	208	39	7	26	26	1.83
31043435--31043546	25	4.5	25	77	6	111	39	8	32	19	1.83
31043435--31043546	49	2.3	50	79	4	129	39	8	32	19	1.83
31043793--31043824	11	2.9	11	95	0	55	25	0	28	46	1.53
31043849--31044005	52	3.0	52	86	1	217	38	7	26	27	1.83
31049152--31049180	12	2.3	13	94	5	51	34	13	0	51	1.42
31052584--31052625	21	2.0	22	85	4	59	52	7	2	38	1.42
31053191--31053241	16	3.5	14	82	12	59	23	3	1	70	1.14
31053191--31053241	15	3.5	15	84	7	61	23	3	1	70	1.14
31066072--31066129	25	2.3	25	100	0	116	37	0	3	58	1.15
31066487--31066538	26	2.1	23	82	10	59	34	9	9	46	1.69
31066842--31066871	15	2.0	15	93	0	51	76	6	0	16	0.99
31067819--31068112	42	7.0	42	88	2	396	44	14	12	27	1.82
31089601--31089653	21	2.5	21	78	0	61	35	3	3	56	1.35
31089601--31089662	24	2.7	22	79	16	63	33	4	3	58	1.36
31090329--31090362	7	4.6	7	86	13	50	47	0	0	52	1.00
31090312--31090356	16	2.9	16	80	9	58	51	0	0	48	1.00
31097713--31097851	68	2.0	70	91	5	230	30	5	12	51	1.60
31103658--31103691	17	2.0	17	88	0	50	55	5	0	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31105591--31105633	16	2.7	17	86	10	56	55	2	0	41	1.12
31106658--31106729	22	3.2	22	86	7	92	54	0	0	45	0.99
31106699--31106731	8	4.1	8	92	0	57	60	0	0	39	0.97
31107015--31107060	15	2.9	16	75	15	51	58	0	2	39	1.10
31116543--31116575	16	1.9	18	88	11	52	84	9	3	3	0.82
31120712--31120740	2	14.5	2	100	0	58	51	0	0	48	1.00
31121005--31121131	48	2.6	49	84	3	157	22	18	18	40	1.91
31121005--31121138	51	2.7	48	84	3	160	23	17	18	41	1.90
31123856--31123923	24	2.8	26	76	10	72	45	1	0	52	1.09
31127179--31127224	3	15.3	3	100	0	92	32	0	0	67	0.91
31137527--31137563	2	18.5	2	100	0	74	48	0	0	51	1.00
31140289--31140328	2	20.5	2	89	5	64	0	52	0	47	1.00
31140651--31140682	6	5.2	6	96	3	55	46	50	3	0	1.17
31141921--31141950	3	10.0	3	100	0	60	33	0	0	66	0.92
31143293--31143494	15	13.5	15	69	5	104	26	21	21	29	1.99
31143275--31143478	60	3.4	59	82	4	212	25	21	22	29	1.99
31155105--31155129	6	4.2	6	100	0	50	16	0	52	32	1.44
31160263--31160298	13	2.8	13	91	0	54	69	0	2	27	1.02
31160559--31160584	13	2.0	13	100	0	52	84	0	0	15	0.62
31160630--31160689	29	2.1	29	87	0	84	48	0	3	48	1.18
31161328--31161689	183	2.0	183	91	1	591	35	8	10	45	1.70
31161643--31161692	27	2.0	27	84	11	70	44	2	2	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31161744--31161782	19	2.0	19	90	5	60	58	0	12	28	1.34
31163629--31163675	21	2.1	24	84	11	64	40	0	2	57	1.11
31168756--31168791	2	18.0	2	100	0	72	50	0	0	50	1.00
31181479--31181503	2	12.5	2	100	0	50	48	0	0	52	1.00
31190985--31191014	15	1.9	16	93	6	53	60	0	0	40	0.97
31205848--31205890	13	3.6	12	81	9	52	58	2	0	39	1.11
31214389--31214462	2	37.0	2	91	0	121	47	1	2	48	1.24
31215120--31215144	11	2.3	11	100	0	50	60	0	24	16	1.36
31221709--31221746	11	3.7	10	83	16	51	23	0	0	76	0.79
31229244--31229287	19	2.3	19	100	0	88	40	18	4	36	1.71
31230171--31230222	21	2.5	20	76	17	54	55	0	0	44	0.99
31231945--31232063	61	2.0	61	100	0	238	36	17	24	21	1.95
31236260--31236307	21	2.3	20	82	3	60	52	2	0	45	1.12
31236969--31237004	19	2.0	18	89	10	56	33	0	0	66	0.92
31236973--31237013	9	4.3	10	81	9	50	31	0	0	68	0.90
31236973--31237010	19	2.1	18	90	9	60	31	0	0	68	0.90
31237011--31237073	22	2.7	24	78	9	76	60	1	0	38	1.07
31237113--31237141	11	2.5	12	88	11	51	41	0	0	58	0.98
31237171--31237201	16	1.9	16	93	0	53	54	12	0	32	1.38
31237885--31237937	22	2.5	22	84	3	72	54	5	0	39	1.24
31266204--31266397	97	2.0	97	95	0	352	47	18	8	24	1.77
31268304--31268338	17	1.9	19	88	11	56	14	11	22	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31278175--31278244	34	2.1	34	81	10	81	52	0	0	47	1.00
31278171--31278250	31	2.6	32	81	13	80	50	0	0	50	1.00
31278427--31278463	17	2.2	17	90	0	56	37	0	0	62	0.96
31279390--31279439	13	3.8	13	77	15	50	64	0	0	36	0.94
31279403--31279478	24	3.1	26	80	14	81	60	0	2	36	1.11
31279390--31279478	27	3.5	24	78	17	83	60	0	2	37	1.09
31280168--31280223	23	2.4	24	82	8	71	53	3	3	39	1.36
31280302--31280339	16	2.3	17	86	4	51	55	2	7	34	1.43
31284142--31284180	2	19.5	2	94	0	69	0	53	0	46	1.00
31290517--31290574	19	3.3	18	80	17	68	55	0	0	44	0.99
31296257--31296599	59	5.9	59	81	6	403	36	10	5	47	1.61
31296259--31296606	118	3.0	118	89	1	529	36	10	5	48	1.60
31296615--31296790	17	10.4	17	73	12	107	77	2	3	15	1.04
31296612--31296790	27	6.9	25	67	14	96	77	2	3	16	1.04
31296614--31296789	11	14.9	11	68	13	66	77	2	3	15	1.04
31297684--31297811	10	12.4	10	67	19	59	66	3	1	28	1.18
31297694--31297749	19	2.8	21	81	13	64	62	3	0	33	1.12
31297691--31297833	22	6.5	22	68	19	66	66	4	1	27	1.20
31297761--31297849	6	13.8	6	73	15	54	73	4	1	21	1.08
31297772--31297837	27	2.4	28	82	9	84	71	4	0	24	1.05
31297819--31297849	13	2.4	13	100	0	62	77	6	0	16	0.97
31300423--31300449	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31301665--31301699	15	2.4	15	90	4	54	28	0	0	71	0.86
31305639--31305677	20	2.0	20	84	0	51	28	0	17	53	1.44
31306308--31306338	2	15.5	2	100	0	62	48	0	0	51	1.00
31314769--31314820	22	2.6	19	84	9	68	69	0	1	28	0.99
31315008--31315067	25	2.3	26	83	11	79	45	0	3	51	1.17
31316754--31316778	2	12.5	2	100	0	50	52	0	0	48	1.00
31333086--31333122	18	2.0	19	89	5	58	45	0	0	54	1.00
31333095--31333155	26	2.5	24	79	12	63	36	0	0	63	0.94
31333120--31333169	25	2.1	23	85	10	66	32	0	0	68	0.90
31333095--31333169	24	3.1	24	76	14	66	36	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160